BAC Information

Click to search

BAC

Clone NameB6Ng01-182P08
Chromosome17 (Build37)
Map Location 94,892,089 - 94,953,827
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneLOC668885, LOC668886, Mettl4, 2700099C18Rik, LOC100043754, LOC668888, LOC100038868
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-182P08.bB6Ng01-182P08.g
ACCGA008710GA008711
length9841,089
definitionB6Ng01-182P08.b B6Ng01-182P08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,892,089 - 94,892,641)(94,952,750 - 94,953,827)
sequence
gaattcttttgagactacccaaatataagtacaatatttcttctatcaaa
aatcttgctgggcagtgatggcgcactcctttgatcccagcacttgggag
gcagaggcaggcagatttctgagttcatggccagcctggtcttcagagtg
aattccaggacaaccagggctacacagagaaaccctgtctcgggaaacat
aaataaataaataaataaataaataaataaataaataaataaataaatct
ttttttttaattaggtattttcctcgtttacattttcaatgctatcccaa
aggtcccccaatcccctacccacccactccccctttttggccctggcgtt
cccctgtactggggcatctaaagttggcaagtccaatgggcctctctttg
cagtgatggccgactaggccatcttttgatgcatatgcagctagaaacaa
gagttccggggtactggttatttcatattgttgttccacctatagggttg
cagttccctttagctccttgggtaatatctctagctcctgcattgggggc
cgtgtgacccatccaatagctgactgtgatcatccacttctgtatttgct
aggccccggcatagtctcacaagagagagctatatctgggtcctttcagc
aaaattttgctagtgtgtgcaatggtgtcactgtttggaagctgattatg
gaatggatccctgcatatgacaatcactagatggtccatctttttgtcac
agctccaaattttgtctctgtaactccttccatgggtgttttgttcccgt
ttctaggaaggggtaaagtgtccacactttggtcttccttcttcttgaat
ttcatgtgtttaggcaagttgtatcttatatcttgggtaatcctaagttt
ctgggctaaatatccacttatcactgagtacatattggtgcaagtttcct
ttgtgattgggttacctcactcaggatgatgccc

gaattcaagggctttttttttagagtgaggaaaggtaatagaagaaaata
aaaaattataattttccttgtgcatagcccattaggtttcttctataatt
ggaataatgtagcatgagttccttgagtttctgtgaatggatgacaacca
tgatccacggtccataatcacagcatctttaaaattatacacatgggatt
gatgtgagcagaagaaggcactttatattttgagccattttatgaacagt
gaaggcaaagctggctcactaaaacaggaatcttagaaaccccaaccttc
agcagcatttcctgtaatttccctctggaatgcttgtccccaaagaggcc
ctgagtcccacactttcttcacatctttgggtccttaaatttcatttctt
agaagacagattgtaattgaccacttgcagggcatgtctattatctctgg
gcctgtgtctacagctctggaaacagaagcagcagagactgtttgctccc
tgatgacctgcttttggatcaggctttcctctggagtggaactcacagtg
agcccactcttgaccatagcaactcctccaggtcacattccttctgtccc
agacatgcaaggttgtccaaagaaggcacagacttctttagggttattag
ctccctggaaatggctagaacagtctgcttgtagttctcagagtgtacca
gccgatgaagtttaactattcaatcctcataaaaatgtactgtttgtata
gttttctcaacagcttattattttttatgaaaaataaatttatttttatt
ttatatgtatgggtgttttgtctgtataccagatgcatgcagtgcccatg
aagtccagaagagggcatgtggtcccctggaaactggagttggagatatt
tttagttgacattataagtacaaaagaatcttctgctgttctattcttct
cctcagaaagctgctggagatgttgcagatttattggctttaccttgccc
tgttcttttcctcccactctactaaaactatccctggagtttagtctcta
acaagtaagacttaggaccggcaaaggggcattcctcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_94892089_94892641
seq2: B6Ng01-182P08.b_47_599

seq1  GAATTCTTTTGAGACTACCCAAATATAAGTACAATATTTCTTCTATCAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTGAGACTACCCAAATATAAGTACAATATTTCTTCTATCAAA  50

seq1  AATCTTGCTGGGCAGTGATGGCGCACTCCTTTGATCCCAGCACTTGGGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTGCTGGGCAGTGATGGCGCACTCCTTTGATCCCAGCACTTGGGAG  100

seq1  GCAGAGGCAGGCAGATTTCTGAGTTCATGGCCAGCCTGGTCTTCAGAGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGGCAGGCAGATTTCTGAGTTCATGGCCAGCCTGGTCTTCAGAGTG  150

seq1  AATTCCAGGACAACCAGGGCTACACAGAGAAACCCTGTCTCGGGAAACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCAGGACAACCAGGGCTACACAGAGAAACCCTGTCTCGGGAAACAT  200

seq1  AAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATCT  250

seq1  TTTTTTTTAATTAGGTATTTTCCTCGTTTACATTTTCAATGCTATCCCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTAATTAGGTATTTTCCTCGTTTACATTTTCAATGCTATCCCAA  300

seq1  AGGTCCCCCAATCCCCTACCCACCCACTCCCCCTTTTTGGCCCTGGCGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCCCCCAATCCCCTACCCACCCACTCCCCCTTTTTGGCCCTGGCGTT  350

seq1  CCCCTGTACTGGGGCATCTAAAGTTGGCAAGTCCAATGGGCCTCTCTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGTACTGGGGCATCTAAAGTTGGCAAGTCCAATGGGCCTCTCTTTG  400

seq1  CAGTGATGGCCGACTAGGCCATCTTTTGATGCATATGCAGCTAGAAACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGATGGCCGACTAGGCCATCTTTTGATGCATATGCAGCTAGAAACAA  450

seq1  GAGTTCCGGGGTACTGGTTATTTCATATTGTTGTTCCACCTATAGGGTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCCGGGGTACTGGTTATTTCATATTGTTGTTCCACCTATAGGGTTG  500

seq1  CAGTTCCCTTTAGCTCCTTGGGTAATATCTCTAGCTCCTGCATTGGGGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCCCTTTAGCTCCTTGGGTAATATCTCTAGCTCCTGCATTGGGGGC  550

seq1  CGT  553
      |||
seq2  CGT  553


seq1: chr17_94952750_94953827
seq2: B6Ng01-182P08.g_67_1155 (reverse)

seq1  TTGA-GAATCCCCCTTTGC--GTTCTTAGTCTTACTTGTTAGAGAACTTA  47
      |||| |||| |||||||||  || || ||||||||||||||||||   ||
seq2  TTGAGGAATGCCCCTTTGCCGGTCCTAAGTCTTACTTGTTAGAGA--CTA  48

seq1  AACT-CAAGGATAGTTTTAGTAGAGTGGGA-GAAAAGAACAGGGC-AGGT  94
      |||| || |||||||||||||||||||||| |||||||||||||| ||||
seq2  AACTCCAGGGATAGTTTTAGTAGAGTGGGAGGAAAAGAACAGGGCAAGGT  98

seq1  -AAGCC-ATAAATCTGC-ACATCT-CAGCAGCTTCTGGAGGAGAAGAATA  140
       ||||| |||||||||| |||||| |||||||||   |||||||||||||
seq2  AAAGCCAATAAATCTGCAACATCTCCAGCAGCTTTCTGAGGAGAAGAATA  148

seq1  GAACAGCAGAAGATTC-TATGTACTTAT-ATGTCAACTAAAAATATCTCC  188
      |||||||||||||||| | ||||||||| |||||||||||||||||||||
seq2  GAACAGCAGAAGATTCTTTTGTACTTATAATGTCAACTAAAAATATCTCC  198

seq1  AACTCCAG-TTCCAGGGGACCACATGCCCTCTTCTGGACTTCATGGGCAC  237
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCAGTTTCCAGGGGACCACATGCCCTCTTCTGGACTTCATGGGCAC  248

seq1  TGCATGCATCTGGTATACAGACAAAACACCCATACATATAAAATAAAAAT  287
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGCATCTGGTATACAGACAAAACACCCATACATATAAAATAAAAAT  298

seq1  AAATTTATTTTTCATAAAAAATAATAAGCTGTTGAGAAAACTATACAAAC  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTATTTTTCATAAAAAATAATAAGCTGTTGAGAAAACTATACAAAC  348

seq1  AGTACATTTTTATGAGGATTGAATAGTTAAACTTCATCGGCTGGTACACT  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACATTTTTATGAGGATTGAATAGTTAAACTTCATCGGCTGGTACACT  398

seq1  CTGAGAACTACAAGCAGACTGTTCTAGCCATTTCCAGGGAGCTAATAACC  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAACTACAAGCAGACTGTTCTAGCCATTTCCAGGGAGCTAATAACC  448

seq1  CTAAAGAAGTCTGTGCCTTCTTTGGACAACCTTGCATGTCTGGGACAGAA  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGAAGTCTGTGCCTTCTTTGGACAACCTTGCATGTCTGGGACAGAA  498

seq1  GGAATGTGACCTGGAGGAGTTGCTATGGTCAAGAGTGGGCTCACTGTGAG  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGTGACCTGGAGGAGTTGCTATGGTCAAGAGTGGGCTCACTGTGAG  548

seq1  TTCCACTCCAGAGGAAAGCCTGATCCAAAAGCAGGTCATCAGGGAGCAAA  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACTCCAGAGGAAAGCCTGATCCAAAAGCAGGTCATCAGGGAGCAAA  598

seq1  CAGTCTCTGCTGCTTCTGTTTCCAGAGCTGTAGACACAGGCCCAGAGATA  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTCTGCTGCTTCTGTTTCCAGAGCTGTAGACACAGGCCCAGAGATA  648

seq1  ATAGACATGCCCTGCAAGTGGTCAATTACAATCTGTCTTCTAAGAAATGA  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACATGCCCTGCAAGTGGTCAATTACAATCTGTCTTCTAAGAAATGA  698

seq1  AATTTAAGGACCCAAAGATGTGAAGAAAGTGTGGGACTCAGGGCCTCTTT  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAAGGACCCAAAGATGTGAAGAAAGTGTGGGACTCAGGGCCTCTTT  748

seq1  GGGGACAAGCATTCCAGAGGGAAATTACAGGAAATGCTGCTGAAGGTTGG  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGACAAGCATTCCAGAGGGAAATTACAGGAAATGCTGCTGAAGGTTGG  798

seq1  GGTTTCTAAGATTCCTGTTTTAGTGAGCCAGCTTTGCCTTCACTGTTCAT  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCTAAGATTCCTGTTTTAGTGAGCCAGCTTTGCCTTCACTGTTCAT  848

seq1  AAAATGGCTCAAAATATAAAGTGCCTTCTTCTGCTCACATCAATCCCATG  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGGCTCAAAATATAAAGTGCCTTCTTCTGCTCACATCAATCCCATG  898

seq1  TGTATAATTTTAAAGATGCTGTGATTATGGACCGTGGATCATGGTTGTCA  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATAATTTTAAAGATGCTGTGATTATGGACCGTGGATCATGGTTGTCA  948

seq1  TCCATTCACAGAAACTCAAGGAACTCATGCTACATTATTCCAATTATAGA  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTCACAGAAACTCAAGGAACTCATGCTACATTATTCCAATTATAGA  998

seq1  AGAAACCTAATGGGCTATGCACAAGGAAAATTATAATTTTTTATTTTCTT  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACCTAATGGGCTATGCACAAGGAAAATTATAATTTTTTATTTTCTT  1048

seq1  CTATTACCTTTCCTCACTCTAAAAAAAAAGCCCTTGAATTC  1078
      |||||||||||||||||||||||||||||||||||||||||
seq2  CTATTACCTTTCCTCACTCTAAAAAAAAAGCCCTTGAATTC  1089


| Home | SequenceCutter | Blast | Download |