BAC Information

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BAC

Clone NameB6Ng01-183E19
Chromosome17 (Build37)
Map Location 56,616,690 - 56,784,675
singlet/doubletdoublet
Overlap geneZnrf4, Safb2, Safb, 2410015M20Rik, Rpl36, Lonp1, LOC619718
Upstream geneSt6gal2, LOC383258, Pot1b, Emr4, Zfp119, BC011426, EG433125, BC031441, Ebi3, Ccdc94, Shd, Fsd1, AW049765, Mpnd, Sh3gl1, Chaf1a, Ubxd1, Hdgfrp2, S3-12, 2310076L09Rik, Lrg1, Sema6b, Tnfaip8l1, D17Wsu104e, Dpp9, LOC668573, A230051N06Rik, Fem1a, Ticam1, M6prbp1, Arrdc5, Uhrf1, Jmjd2b, Ptprs, EG668592
Downstream geneTmem146, Ranbp3, Ccpn-ps, AI662250, Ndufa11, Fut4-ps1, Nrtn, Dus3l, Gm546, Rfx2, Acsbg2, 1700061G19Rik, Mllt1, Asah3, Clpp, Alkbh7, Pspn, Gtf2f1, Khsrp, Slc25a41, Slc25a23, Crb3, Dennd1c, Tubb4, Tnfsf9, Cd70, Tnfsf14, C3, Gpr108, Trip10, LOC668635, Vav1, Emr1, EG224916
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-183E19.bB6Ng01-183E19.g
ACCGA008962GA008963
length1,170739
definitionB6Ng01-183E19.b B6Ng01-183E19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,616,690 - 56,617,847)(56,783,937 - 56,784,675)
sequence
gaattcattcattccggcccagagctggagacatgagcaagagcctggag
ccgaagagtccgggcggaaggactgggtcataaacggggaagagtgccat
gaataattgacaaggagcctaaattaagaacagggcttcccagagcctgc
accgcggccagtttagcagagacggctttgtcctcttgcctgactggggt
gaccctgattgacgtacgtggtgctagtcgagattggagcacgtagaagg
tgccggaggtttgcatagtgttcaggggcccttagtgtagtttctctcat
gcacagcaggtacttgaagtttgggtactctgtggagatgtccacatcct
tgcatagtccctgcaggtgtatggcactgttggctgcacacagtgtgtac
tcatatattatggagctgggtgctggcaggactggccatgccagagcaga
ctggccatccatcagggagggaaccaggccttgccttgtttgtccgaact
gagtaaccgcttctgccccctgggtcctcgtgagcagcgaaggggaacat
gtaaaccgcgggtctgagagtctggaagcttccagtggccattcatcccc
tctcagatccccgctgtgttaaatgccatttacacagaagtaacaaaaca
gaacaatcggcctgcagctgacagagcatagacaggcaacaatatatcaa
cccaaagccggttatgtgttcagccacttagggcggccatcgctacctct
gcttcagtcacagcagactcctgctcctcctttgcccctactcctcccac
acaggttccggcctgccccagggccctggtacatgctggtcctcagccta
gtgagatgttcctttcgctgctcagagacgaccattcccagaaccacttc
ctggcagactgttcccatattgtgctgaagaggtattctcacagtcagaa
atgctatgaccctccgtttgcttctcatgacgcaggctccttgctcgggt
tgtgcctcgatgtcctgtctctggggtggcaacagctgatgacttagggc
tgttaggaagaagtgaaggtgagtccatcttaccaatcaccgccaattgg
tgggagcctagaaatttccccaagaaaagccttggggcgtgtgctctaag
gccgcaagggtcagggtcac
gaattccaggacagccagggctatacagagaaagcctgtttcgaaaaaac
aaaacaaaacaaagaaaaaagaaaaagaaagaaaacaaaacaaacaaaat
ttaaggatgcttgatgggtgtggggcacatacatttaatcccagcactct
taaggcagatgcaggtgaatctctgagttcaaggttagcctaggctacat
aggtagtttcaggacagccaggctatgtagagagagcctatctcaataca
tctagaacaacaaaaagacttaacactgctatcctgtgtggtcagtctgt
ctgttcagcctaccttttagagaacaatgatataacagccaatattgctg
tcctagatttcccatgttaccattttgtacaacctaaggtaatacatagc
tgtatttttttcttgacggggtgcctgcattaaagtgtgcaccaccacat
ccagccatagaatcaatctttatttcttttttaagatttatttacttatt
atatgtaagtacactgtagctgtcttcagacacaccacaagagagcatca
gatctcattatggatggttgtgagccaccatgtggttgctgggatttgaa
ctcatgaccttcagaagagcaatcggagctcttaaccactgagccatctc
tccagccccatagaatcttaagtgatgtactcttccatgccctggatgca
gagtagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_56616690_56617847
seq2: B6Ng01-183E19.b_44_1213

seq1  GAATTCATTCATTCCGGCCCAGAGCTGGAGACATGAGCAAGAGCCTGGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCATTCCGGCCCAGAGCTGGAGACATGAGCAAGAGCCTGGAG  50

seq1  CCGAAGAGTCCGGGCGGAAGGACTGGGTCATAAACGGGGAAGAGTGCCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAAGAGTCCGGGCGGAAGGACTGGGTCATAAACGGGGAAGAGTGCCAT  100

seq1  GAATAATTGACAAGGAGCCTAAATTAAGAACAGGGCTTCCCAGAGCCTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAATTGACAAGGAGCCTAAATTAAGAACAGGGCTTCCCAGAGCCTGC  150

seq1  ACCGCGGCCAGTTTAGCAGAGACGGCTTTGTCCTCTTGCCTGACTGGGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGCGGCCAGTTTAGCAGAGACGGCTTTGTCCTCTTGCCTGACTGGGGT  200

seq1  GACCCTGATTGACGTACGTGGTGCTAGTCGAGATTGGAGCACGTAGAAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCTGATTGACGTACGTGGTGCTAGTCGAGATTGGAGCACGTAGAAGG  250

seq1  TGCCGGAGGTTTGCATAGTGTTCAGGGGCCCTTAGTGTAGTTTCTCTCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCGGAGGTTTGCATAGTGTTCAGGGGCCCTTAGTGTAGTTTCTCTCAT  300

seq1  GCACAGCAGGTACTTGAAGTTTGGGTACTCTGTGGAGATGTCCACATCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGCAGGTACTTGAAGTTTGGGTACTCTGTGGAGATGTCCACATCCT  350

seq1  TGCATAGTCCCTGCAGGTGTATGGCACTGTTGGCTGCACACAGTGTGTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATAGTCCCTGCAGGTGTATGGCACTGTTGGCTGCACACAGTGTGTAC  400

seq1  TCATATATTATGGAGCTGGGTGCTGGCAGGACTGGCCATGCCAGAGCAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATATTATGGAGCTGGGTGCTGGCAGGACTGGCCATGCCAGAGCAGA  450

seq1  CTGGCCATCCATCAGGGAGGGAACCAGGCCTTGCCTTGTTTGTCCGAACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCATCCATCAGGGAGGGAACCAGGCCTTGCCTTGTTTGTCCGAACT  500

seq1  GAGTAACCGCTTCTGCCCCCTGGGTCCTCGTGAGCAGCGAAGGGGAACAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAACCGCTTCTGCCCCCTGGGTCCTCGTGAGCAGCGAAGGGGAACAT  550

seq1  GTAAACCGCGGGTCTGAGAGTCTGGAAGCTTCCAGTGGCCATTCATCCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACCGCGGGTCTGAGAGTCTGGAAGCTTCCAGTGGCCATTCATCCCC  600

seq1  TCTCAGATCCCCGCTGTGTTAAATGCCATTTACACAGAAGTAACAAAACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGATCCCCGCTGTGTTAAATGCCATTTACACAGAAGTAACAAAACA  650

seq1  GAACAATCGGCCTGCAGCTGACAGAGCATAGACAGGCAACAATATATCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAATCGGCCTGCAGCTGACAGAGCATAGACAGGCAACAATATATCAA  700

seq1  CCCAAAGCCGGTTATGTGTTCAGCCACTTAGGGCGGCCATCGCTACCTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAAGCCGGTTATGTGTTCAGCCACTTAGGGCGGCCATCGCTACCTCT  750

seq1  GCTTCAGTCACAGCAGACTCCTGCTCCTCCTTTGCCCCTACTCCTCCCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCAGTCACAGCAGACTCCTGCTCCTCCTTTGCCCCTACTCCTCCCAC  800

seq1  ACAGGTTCCGGCCTGCCCCAGGGCCCTGGTACATGCTGGTCCTCAGCCTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTTCCGGCCTGCCCCAGGGCCCTGGTACATGCTGGTCCTCAGCCTA  850

seq1  GTGAGATGTTCCTTTCGCTGCTCAGAGACGACCATTCCCAGAACCACTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGATGTTCCTTTCGCTGCTCAGAGACGACCATTCCCAGAACCACTTC  900

seq1  CTGGCAGACTGTTCCCAATATTGTGCTGAAGAGGTATTCTCACAGTCAGA  950
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CTGGCAGACTGTTCCC-ATATTGTGCTGAAGAGGTATTCTCACAGTCAGA  949

seq1  AATGCTATGACCCTCCGTTTGCTTCTCATGACGCAGGCTCCTTGCTCGGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTATGACCCTCCGTTTGCTTCTCATGACGCAGGCTCCTTGCTCGGG  999

seq1  TTGTGCCTCGATGTCCTGTCTCT-GTGTGGCAACAGCTGATGACTTAGGG  1049
      ||||||||||||||||||||||| | ||||||||||||||||||||||||
seq2  TTGTGCCTCGATGTCCTGTCTCTGGGGTGGCAACAGCTGATGACTTAGGG  1049

seq1  CTG-TAGGAAG-AGTG-AGGTGAGT-CATCCTACCAATCACCG-CAATTG  1094
      ||| ||||||| |||| |||||||| |||| |||||||||||| ||||||
seq2  CTGTTAGGAAGAAGTGAAGGTGAGTCCATCTTACCAATCACCGCCAATTG  1099

seq1  GT-GGAGCCTAGAA--TTCCCCAAGAGAGGCTTGGGGGCGTG-GCTC--A  1138
      || |||||||||||  |||||||||| | || | |||||||| ||||  |
seq2  GTGGGAGCCTAGAAATTTCCCCAAGAAAAGCCTTGGGGCGTGTGCTCTAA  1149

seq1  GGCCGCAA-GGTCGGGGTCAC  1158
      |||||||| |||| |||||||
seq2  GGCCGCAAGGGTCAGGGTCAC  1170

seq1: chr17_56783937_56784675
seq2: B6Ng01-183E19.g_66_804 (reverse)

seq1  ACACACACACACACACACACACACACACACACACTACTCTGCATCCAGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACACACTACTCTGCATCCAGGG  50

seq1  CATGGAAGAGTACATCACTTAAGATTCTATGGGGCTGGAGAGATGGCTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGAAGAGTACATCACTTAAGATTCTATGGGGCTGGAGAGATGGCTCA  100

seq1  GTGGTTAAGAGCTCCGATTGCTCTTCTGAAGGTCATGAGTTCAAATCCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTAAGAGCTCCGATTGCTCTTCTGAAGGTCATGAGTTCAAATCCCA  150

seq1  GCAACCACATGGTGGCTCACAACCATCCATAATGAGATCTGATGCTCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACCACATGGTGGCTCACAACCATCCATAATGAGATCTGATGCTCTCT  200

seq1  TGTGGTGTGTCTGAAGACAGCTACAGTGTACTTACATATAATAAGTAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTGTGTCTGAAGACAGCTACAGTGTACTTACATATAATAAGTAAAT  250

seq1  AAATCTTAAAAAAGAAATAAAGATTGATTCTATGGCTGGATGTGGTGGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTTAAAAAAGAAATAAAGATTGATTCTATGGCTGGATGTGGTGGTG  300

seq1  CACACTTTAATGCAGGCACCCCGTCAAGAAAAAAATACAGCTATGTATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTTTAATGCAGGCACCCCGTCAAGAAAAAAATACAGCTATGTATTA  350

seq1  CCTTAGGTTGTACAAAATGGTAACATGGGAAATCTAGGACAGCAATATTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGGTTGTACAAAATGGTAACATGGGAAATCTAGGACAGCAATATTG  400

seq1  GCTGTTATATCATTGTTCTCTAAAAGGTAGGCTGAACAGACAGACTGACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTATATCATTGTTCTCTAAAAGGTAGGCTGAACAGACAGACTGACC  450

seq1  ACACAGGATAGCAGTGTTAAGTCTTTTTGTTGTTCTAGATGTATTGAGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGGATAGCAGTGTTAAGTCTTTTTGTTGTTCTAGATGTATTGAGAT  500

seq1  AGGCTCTCTCTACATAGCCTGGCTGTCCTGAAACTACCTATGTAGCCTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCTCTCTACATAGCCTGGCTGTCCTGAAACTACCTATGTAGCCTAG  550

seq1  GCTAACCTTGAACTCAGAGATTCACCTGCATCTGCCTTAAGAGTGCTGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAACCTTGAACTCAGAGATTCACCTGCATCTGCCTTAAGAGTGCTGGG  600

seq1  ATTAAATGTATGTGCCCCACACCCATCAAGCATCCTTAAATTTTGTTTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATGTATGTGCCCCACACCCATCAAGCATCCTTAAATTTTGTTTGT  650

seq1  TTTGTTTTCTTTCTTTTTCTTTTTTCTTTGTTTTGTTTTGTTTTTTCGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTCTTTCTTTTTCTTTTTTCTTTGTTTTGTTTTGTTTTTTCGAA  700

seq1  ACAGGCTTTCTCTGTATAGCCCTGGCTGTCCTGGAATTC  739
      |||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCTTTCTCTGTATAGCCCTGGCTGTCCTGGAATTC  739