BAC Information

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BAC

Clone NameB6Ng01-185F05
Chromosome17 (Build37)
Map Location 24,969,904 - 25,147,329
singlet/doubletdoublet
Overlap gene4930528F23Rik, Fahd1, Hagh, Igfals, Nubp2, Spsb3, Mrps34, Nme3, Mapk8ip3, Hn1l, Cramp1l
Upstream genePrss33, 4931440B09Rik, Prss32, Prss21, Dcpp1, LOC666157, Dcpp2, LOC620233, Dcpp3, Sbp, Sbpl, Tmprss8, Prss22, LOC100042414, LOC383225, Prss27, Kctd5, Pdpk1, Amdhd2, Atp6v0c, Tbc1d24, Ntn2l, 1600002H07Rik, Ccnf, Abca17, Abca3, Rnps1, Dci, Dnase1l2, E4f1, 1700012G19Rik, Gbl, 9930021D14Rik, LOC666299, Caskin1, Traf7, Rab26, Pkd1, Tsc2, Nthl1, Slc9a3r2, Npw, Zfp598, Syngr3, Gfer, Noxo1, Tbl3, Rnf151, Rps2, Snora64, Ndufb10, Rpl3l, Sepx1, Hs3st6
Downstream geneIft140, BC054438, Telo2, 1110018H23Rik, Clcn7, Gm317, BC003965, Unkl, Gnptg, 0610007P22Rik, Ube2i, Prss34, Prss28, Prss29, LOC432543, LOC666472, Tpsab1, Mcpt6, Tpsg1, Cacna1h, Tekt4, Sstr5, LOC100042580, Sox8, Tmem112, LOC545396, Gng13, Chtf18, Rpusd1, BC052484, Msln, Narfl, Haghl, Ccdc78, BC008155, Metrn, Fbxl16, Wdr24, 2610003J06Rik, Stub1, Rhbdl1, Rhot2, Wdr90, 9530058B02Rik, 0610011F06Rik, Wfikkn1, Rab40c, LOC100043160, Pigq, F430201B04Rik, D630044L22Rik, Solh, 1700022N22Rik, Rab11fip3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-185F05.bB6Ng01-185F05.g
ACCGA010471GA010472
length1,156523
definitionB6Ng01-185F05.b B6Ng01-185F05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,969,904 - 24,971,075)(25,146,802 - 25,147,329)
sequence
gaattccctagaactggacttgcagatagttgtaagccaccatgtgggaa
ctgagaactgagaactgaacctatgtctcttaaccactgagccatctctc
cagcccctatttttttaatgggggaagctcatattaataatgatcaatct
gagagaagtaacaactctttcctcaggcaagtacaatgttcacagaattt
gacagaagtatgatatacacgaggccctgagtttagtccatatgcatatt
tcagatgttctagatgagtcattgcacaccctagtcttcctacctttaat
tattttaaaattctttttatttattcttctctcatacaatacatcctgac
cacaccctccctccatcctctcctctcagcatcccccaaacctcccctct
ctctcagatccacttctcatccatttcccttcagaaaagggcagggctcc
caatgatattaaccaaacccatagctagatgcaataagactaggcacaac
ccctcatagcaaggctgagtgaggcaacccattaggaagaaagagatgcc
aagaccaggcaaagagtcagacactcctactcctcctgttaggaatccca
caaaaaccccatgctaagtcatcacagcacatgtgcagaggctccagcgt
agacccatgcaggcaggcaatcaggctctgtgactgacacctccgtctct
atgagctccctgcttagttgatactgtgggccgtgttctcctgtgttcta
aacctctctggcttctatagtccttcctcccctcttctgaagggttccct
gagccctgcttagtgtgtgggtgtggctctctgcatctgctcccatcacc
tgcttgtctattgggatgtaagcctttcttctaccttagaacatatatga
aattataatacttgtttttattatttttatttttagtaaacacaatagtt
gatgtctatacagtggaacagctaaaagtaaagctttgaaaagtgaaaga
aaagctgatcctttctatggcatcctttatgcttacatttctacatgaca
ttgatgacgaactaactagttagtagaatagatggttagttactttattt
ttcacactcatgaaattatagtataaggtcaaactctatagtagtacgct
gttctt
agctccagcctctgccttctgagtactgggattaaaagcatgcacctcta
cacctagttcagttcctcttaaagttacagtgaatagtttctatggtgtc
taccttgataggtaagactgactgccttttgctagtaaagaatgttttaa
catcttgctatttgaaacctaattttagattggtcagaaattatttcaga
tagcaaagtcataaattgaaaattgtcatatatagtatggaagtctttgg
ttaggttgaataactatggtcttatcactatagaacaatgttaaaaacta
cctagaacagaagatatttccaatagtttatagttctatggaggtaaaat
gtattggctatagaagacaataagggaggtcctatgtttttatagagacg
gggattgtagttgtgatttctttatttgtgggaggggtgggagaaccttt
gaggtatgacgctgagccttgcaggtgtgaggactggagactctaatgga
aggaagggaatctgtgtcaaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_24969904_24971075
seq2: B6Ng01-185F05.b_43_1198

seq1  GAATTCCCTAGAACTGGACTTGCAGATAGTTGTAAGCCACCATGTGGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTAGAACTGGACTTGCAGATAGTTGTAAGCCACCATGTGGGAA  50

seq1  CTGAGAACTGAGAACTGAACCTATGTCTCTTAACCACTGAGCCATCTCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAACTGAGAACTGAACCTATGTCTCTTAACCACTGAGCCATCTCTC  100

seq1  CAGCCCCTATTTTTTTAATGGGGGAAGCTCATATTAATAATGATCAATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCCTATTTTTTTAATGGGGGAAGCTCATATTAATAATGATCAATCT  150

seq1  GAGAGAAGTAACAACTCTTTCCTCAGGCAAGTACAATGTTCACAGAATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAAGTAACAACTCTTTCCTCAGGCAAGTACAATGTTCACAGAATTT  200

seq1  GACAGAAGTATGATATACACGAGGCCCTGAGTTTAGTCCATATGCATATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAAGTATGATATACACGAGGCCCTGAGTTTAGTCCATATGCATATT  250

seq1  TCAGATGTTCTAGATGAGTCATTGCACACCCTAGTCTTCCTACCTTTAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATGTTCTAGATGAGTCATTGCACACCCTAGTCTTCCTACCTTTAAT  300

seq1  TATTTTAAAATTCTTTTTATTTATTCTTCTCTCATACAATACATCCTGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTAAAATTCTTTTTATTTATTCTTCTCTCATACAATACATCCTGAC  350

seq1  CACACCCTCCCTCCATCCTCTCCTCTCAGCATCCCCCAAACCTCCCCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCCTCCCTCCATCCTCTCCTCTCAGCATCCCCCAAACCTCCCCTCT  400

seq1  CTCTCAGATCCACTTCTCATCCATTTCCCTTCAGAAAAGGGCAGGGCTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCAGATCCACTTCTCATCCATTTCCCTTCAGAAAAGGGCAGGGCTCC  450

seq1  CAATGATATTAACCAAACCCATAGCTAGATGCAATAAGACTAGGCACAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGATATTAACCAAACCCATAGCTAGATGCAATAAGACTAGGCACAAC  500

seq1  CCCTCATAGCAAGGCTGAGTGAGGCAACCCATTAGGAAGAAAGAGATGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCATAGCAAGGCTGAGTGAGGCAACCCATTAGGAAGAAAGAGATGCC  550

seq1  AAGACCAGGCAAAGAGTCAGACACTCCTACTCCTCCTGTTAGGAATCCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCAGGCAAAGAGTCAGACACTCCTACTCCTCCTGTTAGGAATCCCA  600

seq1  CAAAAACCCCATGCTAAGTCATCACAGCACATGTGCAGAGGCTCCAGCGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAACCCCATGCTAAGTCATCACAGCACATGTGCAGAGGCTCCAGCGT  650

seq1  AGACCCATGCAGGCAGGCAATCAGGCTCTGTGACTGACACCTCCGTCTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCATGCAGGCAGGCAATCAGGCTCTGTGACTGACACCTCCGTCTCT  700

seq1  ATGAGCTCCCTGCTTAGTTGATACTGTGGGCCGTGTTCTCCTGTGTTCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGCTCCCTGCTTAGTTGATACTGTGGGCCGTGTTCTCCTGTGTTCTA  750

seq1  AACCTCTCTGGCTTCTATAGTCCTTCCTCCCCTCTTCTGAAGGGTTCCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTCTCTGGCTTCTATAGTCCTTCCTCCCCTCTTCTGAAGGGTTCCCT  800

seq1  GAGCCCTGCTTAGTGTGTGGGTGTGGCTCTCTGCATCTGCTCCCATCACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCCTGCTTAGTGTGTGGGTGTGGCTCTCTGCATCTGCTCCCATCACC  850

seq1  TGCTTGTCTATTGGGATGTAAGCCTTTCTTCTACCTTAGAACATATATGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGTCTATTGGGATGTAAGCCTTTCTTCTACCTTAGAACATATATGA  900

seq1  AATTATAATACTTGTTTTTATTATTTTTATTTTTAGTAAACACAATAGTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATAATACTTGTTTTTATTATTTTTATTTTTAGTAAACACAATAGTT  950

seq1  GATGTCTATACAGTGGAACAGCTAAAAGTAAAAGCTTTGAAAAGTGAAGG  1000
      ||||||||||||||||||||||||||||| |||||||||||||||||| |
seq2  GATGTCTATACAGTGGAACAGCTAAAAGT-AAAGCTTTGAAAAGTGAAAG  999

seq1  AAAAGCTGATCCTTTCTATGGCATCCTTTATGCTTACATTTCTACATTGA  1050
      |||||||||||||||||||||||||||||||||||||||||||||||   
seq2  AAAAGCTGATCCTTTCTATGGCATCCTTTATGCTTACATTTCTACAT--G  1047

seq1  ACATTGATGACGAAACTACCAAAGTAGTTAG--AAATAGATGGTAAGTAA  1098
      ||||||||||||||     | || |||||||   |||||||||| |||  
seq2  ACATTGATGACGAA-----CTAACTAGTTAGTAGAATAGATGGTTAGT-T  1091

seq1  ACATTATTTTCAACAAATTCATGAAAAATAATTAGTTAATAAAGTCAAAC  1148
      || |||||||   || | |||||  |||| | ||||  |||| |||||||
seq2  ACTTTATTTT--TCACACTCATG--AAATTA-TAGT--ATAAGGTCAAAC  1134

seq1  TCTATAGTAGTTACAGCTGTTCTT  1172
      |||||||||| ||| |||||||||
seq2  TCTATAGTAG-TAC-GCTGTTCTT  1156

seq1: chr17_25146802_25147329
seq2: B6Ng01-185F05.g_67_595 (reverse)

seq1  CCCTTGACACAGATTCCCTTCCTTCCATT-GAGTCTCCTGTCCTCACACC  49
      ||||||||||||||||||||||||||||| |||||||| |||||||||||
seq2  CCCTTGACACAGATTCCCTTCCTTCCATTAGAGTCTCCAGTCCTCACACC  50

seq1  TGCAAGGCTCAGCGTCATACCTCAAAGGTTCTCCCACCCCTCCCACAAAT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGGCTCAGCGTCATACCTCAAAGGTTCTCCCACCCCTCCCACAAAT  100

seq1  AAAGAAATCACAACTACAATCCCCGTCTCTATAAAAACATAGGACCTCCC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAATCACAACTACAATCCCCGTCTCTATAAAAACATAGGACCTCCC  150

seq1  TTATTGTCTTCTATAGCCAATACATTTTACCTCCATAGAACTATAAACTA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGTCTTCTATAGCCAATACATTTTACCTCCATAGAACTATAAACTA  200

seq1  TTGGAAATATCTTCTGTTCTAGGTAGTTTTTAACATTGTTCTATAGTGAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAATATCTTCTGTTCTAGGTAGTTTTTAACATTGTTCTATAGTGAT  250

seq1  AAGACCATAGTTATTCAACCTAACCAAAGACTTCCATACTATATATGACA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCATAGTTATTCAACCTAACCAAAGACTTCCATACTATATATGACA  300

seq1  ATTTTCAATTTATGACTTTGCTATCTGAAATAATTTCTGACCAATCTAAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCAATTTATGACTTTGCTATCTGAAATAATTTCTGACCAATCTAAA  350

seq1  ATTAGGTTTCAAATAGCAAGATGTTAAAACATTCTTTACTAGCAAAAGGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGGTTTCAAATAGCAAGATGTTAAAACATTCTTTACTAGCAAAAGGC  400

seq1  AGTCAGTCTTACCTATCAAGGTAGACACCATAGAAACTATTCACTGTAAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGTCTTACCTATCAAGGTAGACACCATAGAAACTATTCACTGTAAC  450

seq1  TTTAAGAGGAACTGAACTAGGTGTAGAGGTGCATGCTTTTAATCCCAGTA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGAGGAACTGAACTAGGTGTAGAGGTGCATGCTTTTAATCCCAGTA  500

seq1  CTCAGAAGGCAGAGGCTGGAGCTGAATTC  528
      |||||||||||||||||||||||||||||
seq2  CTCAGAAGGCAGAGGCTGGAGCTGAATTC  529