BAC Information

Click to search

BAC

Clone NameB6Ng01-188B05
Chromosome17 (Build37)
Map Location 83,291,032 - 83,433,879
singlet/doubletdoublet
Overlap geneLOC100043711
Upstream geneLOC100043707, LOC625467, LOC668836, EG433141, EG625514
Downstream geneLOC100043900, AW548124, EG545226, Eml4, Cox7a2l, Kcng3, Mta3, Haao
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-188B05.bB6Ng01-188B05.g
ACCGA012479GA012480
length1,1131,119
definitionB6Ng01-188B05.b B6Ng01-188B05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,432,761 - 83,433,879)(83,291,032 - 83,292,170)
sequence
gaattcttttgtatgtttgttgcaagtgacaccagaccaggtgggaacct
gcgcgtatcttggggctaggtacaaggtaagtctggtgtagttaaaaata
aggattctgactgcattgagtggcttgtagccttccttgggtagccactg
ggtagtttcacaccatcgacagtgagtttcttgactggatgggtgtagag
aaaagctgaaactgacttctttctctctttccaggtcaaaaagtcctaga
aagtacagagctcctgtcctgatgagaaccattgcccgtgaccagaaggg
tctgggacagtagaggcaatcacgtgcacaatgtagaattacagaaagga
taacactcagaataacataaaggtagctaacctgagtggtaggcatcagt
gactgccagcattgtgatatctgaggcaggaggataataaattcagactg
cccaggctacattatgatttgaacagaagcctgtgaagaatccacgagac
cccatctcaaaataaactctgaaaccgtaagaaggctggatacataacat
agcactcaagtgcctctctatgagttcaaggccagcctggtctacatagt
tggcacagtatgcttgaggtcccaggtccaatctcaacattgtgaaaaaa
agacaaaagggttcagtattgttccctggagacaaaacccacacacaggg
agtattttatgagagtgctctattaaattttgaagttttttttcccactg
tagaagaaataacatatattttgacctgggaattggaaaatatgttctat
tgtgacaggtgtgtgttaaggcaactgaagctttcagaatatgtaagtgt
tcatttttcctcagttctatgatggttaaaaaaaatcatgcaacattggt
gttatgtaggaataacttcagaaaccactttaataattatcatattaaac
aatcatactattctgggtgtatggtcagaaaaaaaaaaaaacttgagctt
tagaagttctcagaggctctgagaaatgggttaagcttgctgaaatacgg
ttgatctaacatgaaaacaaatcaacatctacttttgccatgcaattaaa
agccatgcctatc
gaattctttgtcaaatatgtaggatgatgggtgatataaatatcaacctg
agttgattattacacaatgtataaatgcacagaaaaaaatcatattttac
cttataaagttatactactatatagtttaaaaaatggatttctgtacatc
tgaaagaactcacatcaaagctcttttatcttaaattctataattctttt
taattttttctggctgaactagttatgcaaattgagtcaggaacaggaag
tcctacctagattattccaacttcactgaacaactaaataaagagccttt
cttggccaagatttggtagaagactcaaggaatatatgaagttaagactg
agttttatgcagaactctgtatctgtggtccttatttctccaaattgata
caagtttttggttttgtgctgttttggtatcttggctcttctggacacaa
ttattaaagctttaattcaattcaatttctgattacaaataaacattaat
gagtgatgatcaaatgcatgcaagagaatgggttttgctcacacacaaaa
agagctctaattcttcctagtccattccaaatacaattcatactttgatg
caattaaaacaagaaatggtgggcaactatggatggctgggagtaggaga
aatggtcttcttccaggcagaaccccctgactggttacacaataccaaca
gctggtcctgagtcacacacttaagtttatacacctgaacagattgaggg
tttacaccttcaattttaaggatttaaggattgggtaggcccttccggtc
agcaccagcactgggtcaccttggtcgcagagtcggtggacatccccaag
gtcccaagtggactctccacgcaatcttaggaccaactgtgagtggaaca
caactttctgttccattccaatctcgtgggacctgagacagcattaggga
agcagtaagcccagcctgaccaggtcacagtccctctggtcagtgccagc
acaggtcactgggcagatgagacacccccaaatccctaaagacagctctg
agcagacccatttcggctcagaacttccagcacctccctgcagagaacgg
tatcatccccacccactag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_83432761_83433879
seq2: B6Ng01-188B05.b_44_1156 (reverse)

seq1  GATAGGCTTGCCTTTTAATTGCCTGTGAAAAGTGGGTTTTGGTTTTTTTT  50
      ||||||| || ||||||||||| ||  |||||| | | || | ||| |||
seq2  GATAGGCATGGCTTTTAATTGCATGGCAAAAGTAGATGTT-GATTTGTTT  49

seq1  TCATTTTTAGTTCAA-CGTATTTAA--CAGCCTTACCCATTTCTTCAGAG  97
      ||| | |||| |||| ||||||| |   ||| | ||||||||| ||||||
seq2  TCA-TGTTAGATCAACCGTATTTCAGCAAGCTTAACCCATTTC-TCAGAG  97

seq1  CCTTCTGAGAACTTCTAAAGCTCAATGTTTTTTTTTTTTTTTCTGGACAA  147
      || ||||||||||||||||||||||    ||||||||||||||| ||| |
seq2  CC-TCTGAGAACTTCTAAAGCTCAA---GTTTTTTTTTTTTTCT-GACCA  142

seq1  TACAACCAGAATAGTATGATTTGTTTAATATTGATAATTTATTAAGTGGT  197
      |||| |||||||||||||| |||||||||| ||||||||  | |||||||
seq2  TACACCCAGAATAGTATGA-TTGTTTAATA-TGATAATTATTAAAGTGGT  190

seq1  TTCTGAAGTTTATTCCTA-ATAACACCAATGTTGCATGATTTTTTTTAAC  246
      |||||||| ||||||||| |||||||||||||||||||||||||||||||
seq2  TTCTGAAG-TTATTCCTACATAACACCAATGTTGCATGATTTTTTTTAAC  239

seq1  CATCATAGAACTGAGG-AAAATGAACACTTACATATTCTGAAAGCTTCAG  295
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CATCATAGAACTGAGGAAAAATGAACACTTACATATTCTGAAAGCTTCAG  289

seq1  TTGCCTTAACACACACCTGTCACAATAGAACATATTTTCCAATTCCCAGG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTTAACACACACCTGTCACAATAGAACATATTTTCCAATTCCCAGG  339

seq1  TCAAAATATATGTTATTTCTTCTACAGTGGGAAAAAAAACTTCAAAATTT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAATATATGTTATTTCTTCTACAGTGGGAAAAAAAACTTCAAAATTT  389

seq1  AATAGAGCACTCTCATAAAATACTCCCTGTGTGTGGGTTTTGTCTCCAGG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAGCACTCTCATAAAATACTCCCTGTGTGTGGGTTTTGTCTCCAGG  439

seq1  GAACAATACTGAACCCTTTTGTCTTTTTTTCACAATGTTGAGATTGGACC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAATACTGAACCCTTTTGTCTTTTTTTCACAATGTTGAGATTGGACC  489

seq1  TGGGACCTCAAGCATACTGTGCCAACTATGTAGACCAGGCTGGCCTTGAA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGACCTCAAGCATACTGTGCCAACTATGTAGACCAGGCTGGCCTTGAA  539

seq1  CTCATAGAGAGGCACTTGAGTGCTATGTTATGTATCCAGCCTTCTTACGG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATAGAGAGGCACTTGAGTGCTATGTTATGTATCCAGCCTTCTTACGG  589

seq1  TTTCAGAGTTTATTTTGAGATGGGGTCTCGTGGATTCTTCACAGGCTTCT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGAGTTTATTTTGAGATGGGGTCTCGTGGATTCTTCACAGGCTTCT  639

seq1  GTTCAAATCATAATGTAGCCTGGGCAGTCTGAATTTATTATCCTCCTGCC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAAATCATAATGTAGCCTGGGCAGTCTGAATTTATTATCCTCCTGCC  689

seq1  TCAGATATCACAATGCTGGCAGTCACTGATGCCTACCACTCAGGTTAGCT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATATCACAATGCTGGCAGTCACTGATGCCTACCACTCAGGTTAGCT  739

seq1  ACCTTTATGTTATTCTGAGTGTTATCCTTTCTGTAATTCTACATTGTGCA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTATGTTATTCTGAGTGTTATCCTTTCTGTAATTCTACATTGTGCA  789

seq1  CGTGATTGCCTCTACTGTCCCAGACCCTTCTGGTCACGGGCAATGGTTCT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGATTGCCTCTACTGTCCCAGACCCTTCTGGTCACGGGCAATGGTTCT  839

seq1  CATCAGGACAGGAGCTCTGTACTTTCTAGGACTTTTTGACCTGGAAAGAG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGGACAGGAGCTCTGTACTTTCTAGGACTTTTTGACCTGGAAAGAG  889

seq1  AGAAAGAAGTCAGTTTCAGCTTTTCTCTACACCCATCCAGTCAAGAAACT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAAGTCAGTTTCAGCTTTTCTCTACACCCATCCAGTCAAGAAACT  939

seq1  CACTGTCGATGGTGTGAAACTACCCAGTGGCTACCCAAGGAAGGCTACAA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTCGATGGTGTGAAACTACCCAGTGGCTACCCAAGGAAGGCTACAA  989

seq1  GCCACTCAATGCAGTCAGAATCCTTATTTTTAACTACACCAGACTTACCT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTCAATGCAGTCAGAATCCTTATTTTTAACTACACCAGACTTACCT  1039

seq1  TGTACCTAGCCCCAAGATACGCGCAGGTTCCCACCTGGTCTGGTGTCACT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACCTAGCCCCAAGATACGCGCAGGTTCCCACCTGGTCTGGTGTCACT  1089

seq1  TGCAACAAACATACAAAAGAATTC  1119
      ||||||||||||||||||||||||
seq2  TGCAACAAACATACAAAAGAATTC  1113

seq1: chr17_83291032_83292170
seq2: B6Ng01-188B05.g_63_1181

seq1  GAATTCTTTGTCAAATATGTAGGATGATGGGTGATATAAATATCAACCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTCAAATATGTAGGATGATGGGTGATATAAATATCAACCTG  50

seq1  AGTTGATTATTACACAATGTATAAATGCACAGAAAAAAATCATATTTTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGATTATTACACAATGTATAAATGCACAGAAAAAAATCATATTTTAC  100

seq1  CTTATAAAGTTATACTACTATATAGTTTAAAAAATGGATTTCTGTACATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATAAAGTTATACTACTATATAGTTTAAAAAATGGATTTCTGTACATC  150

seq1  TGAAAGAACTCACATCAAAGCTCTTTTATCTTAAATTCTATAATTCTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGAACTCACATCAAAGCTCTTTTATCTTAAATTCTATAATTCTTTT  200

seq1  TAATTTTTTCTGGCTGAACTAGTTATGCAAATTGAGTCAGGAACAGGAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTTTCTGGCTGAACTAGTTATGCAAATTGAGTCAGGAACAGGAAG  250

seq1  TCCTACCTAGATTATTCCAACTTCACTGAACAACTAAATAAAGAGCCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTACCTAGATTATTCCAACTTCACTGAACAACTAAATAAAGAGCCTTT  300

seq1  CTTGGCCAAGATTTGGTAGAAGACTCAAGGAATATATGAAGTTAAGACTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCCAAGATTTGGTAGAAGACTCAAGGAATATATGAAGTTAAGACTG  350

seq1  AGTTTTATGCAGAACTCTGTATCTGTGGTCCTTATTTCTCCAAATTGATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTATGCAGAACTCTGTATCTGTGGTCCTTATTTCTCCAAATTGATA  400

seq1  CAAGTTTTTGGTTTTGTGCTGTTTTGGTATCTTGGCTCTTCTGGACACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTTTTGGTTTTGTGCTGTTTTGGTATCTTGGCTCTTCTGGACACAA  450

seq1  TTATTAAAGCTTTAATTCAATTCAATTTCTGATTACAAATAAACATTAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAAAGCTTTAATTCAATTCAATTTCTGATTACAAATAAACATTAAT  500

seq1  GAGTGATGATCAAATGCATGCAAGAGAATGGGTTTTGCTCACACACAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGATGATCAAATGCATGCAAGAGAATGGGTTTTGCTCACACACAAAA  550

seq1  AGAGCTCTAATTCTTCCTAGTCCATTCCAAATACAATTCATACTTTGATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTCTAATTCTTCCTAGTCCATTCCAAATACAATTCATACTTTGATG  600

seq1  CAATTAAAACAAGAAATGGTGGGCAACTATGGATGGCTGGGAGTAGGAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTAAAACAAGAAATGGTGGGCAACTATGGATGGCTGGGAGTAGGAGA  650

seq1  AATGGTCTTCTTCCAGGCAGAACCCCCTGACTGGTTACACAATACCAACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTCTTCTTCCAGGCAGAACCCCCTGACTGGTTACACAATACCAACA  700

seq1  GCTGGTCCTGAGTCACACACTTAAGTTTATACACCTGAACAGATTGAGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGTCCTGAGTCACACACTTAAGTTTATACACCTGAACAGATTGAGGG  750

seq1  TTTACACCTTCAATTTTAAGGATTTAAGGATTGGGTAGGCCCTTCCGGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACACCTTCAATTTTAAGGATTTAAGGATTGGGTAGGCCCTTCCGGTC  800

seq1  AGCACCAGCACTGGGTCACCTTGGTCGCAGAGTCGGTGGACATCCCCAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCAGCACTGGGTCACCTTGGTCGCAGAGTCGGTGGACATCCCCAAG  850

seq1  GTCCCAAGTGGACTCTCCACGCAATCTTAGGACCAACTGTGAGTGGAACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCAAGTGGACTCTCCACGCAATCTTAGGACCAACTGTGAGTGGAACA  900

seq1  CAAC-TTCTGTTCCATTCCAATCTCGTGGGACCTGAGACAGCATTAGGGA  949
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTTCTGTTCCATTCCAATCTCGTGGGACCTGAGACAGCATTAGGGA  950

seq1  AGCAGTAAGCCCAGCCTGACCAGGGTCACAAGTCCCTTCTGGTCAGTGCC  999
      |||||||||||||||||||||| |||||| |||||| |||||||||||||
seq2  AGCAGTAAGCCCAGCCTGACCA-GGTCAC-AGTCCC-TCTGGTCAGTGCC  997

seq1  AGCACCAGGTCACCTGGGCA-AGGAATTGGAGGACACCCCCAAAATCCCT  1048
      |||| ||||||| ||||||| | ||       ||||||||| ||||||||
seq2  AGCA-CAGGTCA-CTGGGCAGATGA-------GACACCCCC-AAATCCCT  1037

seq1  AAAGGACAGCTTCTGAGGCAGACCCCATTTCGGGCTCCAGACATCCAGGC  1098
      ||| |||||| ||||| ||||| |||||||| |||||   || |||| ||
seq2  AAA-GACAGC-TCTGA-GCAGA-CCCATTTC-GGCTCAGAACTTCCA-GC  1081

seq1  ACCTTCCCTGCCAGAGGACAGGTATCATCCCCACCCACTAG  1139
      ||| |||||| ||||| || |||||||||||||||||||||
seq2  ACC-TCCCTG-CAGAGAAC-GGTATCATCCCCACCCACTAG  1119