BAC Information

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BAC

Clone NameB6Ng01-188C24
Chromosome17 (Build37)
Map Location 46,767,487 - 46,903,193
singlet/doubletdoublet
Overlap geneKlc4, Mrpl2, Cul7, BC011248, Klhdc3, Mea1, Ppp2r5d, Pex6, Gnmt, Tnrc5, Ptcra
Upstream geneCapn11, Tmem63b, Mrpl14, LOC100043363, Vegfa, Mrps18a, 1700027N10Rik, Mad2l1bp, Gtpbp2, Polh, Xpo5, Rpo1-1, Yipf3, Gm88, Tjap1, Egfl9, Abcc10, BC040756, Zfp318, LOC677168, Crip3, Slc22a7, EG328825, Ttbk1, BC048355, Parc, Srf, Ptk7
Downstream gene2310039H08Rik, Rpl7l1, BC032203, A330017A19Rik, Tbcc, Prph2, Ubr2, LOC100043385, EG240110, Trerf1, Mrps10, Guca1b, Guca1a, EG545208, 1700001C19Rik, AI661453, Tbn, Ccnd3, Bysl, Trfp, LOC668463, Usp49, 1110002E23Rik, Frs3, Pgc, LOC100043405
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-188C24.bB6Ng01-188C24.g
ACCGA012558GA012559
length1,117295
definitionB6Ng01-188C24.b B6Ng01-188C24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,767,487 - 46,768,604)(46,902,899 - 46,903,193)
sequence
gaattcaacagtcctgcacactaccactgccctcatccttctaggaaggg
tcctgaacaacgtcttcaatgaagactccgaacacaaaatgttacctggt
tcatttattaaagaaacagtgaaatatgtggacctgtagtgaggcagcag
agggtaaaagagaccagggcaaggcagcccagttggccagccccaaactg
acagaagagccagcatcaggcgcatccctgaggtgcagacccactttctc
ccaccttgggagcctcagtcagctactctagaggactccaaagtagagat
catgttatcctgagggcccttccgaaggggggttcccagggaaggagcct
agaccctagaagcagcaatctaccacatacaccgctccctcttcaccatc
ctattgagttggggaagagacaggagccatggggaatgctgtaagggctg
tggggacccagcagactaaaagagggagttgaatgtcagctacttgaaga
aaggtccacagtgctggcgctgaggccccgggagacctgaaagagaccag
caaccacacatcactgcaaactcctggagtctgcctgctctgcagagact
aaagatggaatttctaacctcaacctaagctctaggactttgcttaggca
cggtctactggaggagctacgggacgaaacctgggcaagaatgctggctt
gcacagtgaatgagctgacccaagagctcactgtgttgaactggctggca
gtgttgcctgctttctctaagggagacttcatgctgctggtgttcctact
tcctcactgagacctcaagggaaggagtaagacacggccagcagctctaa
gtcactctgaattattaccagcttagagagcaccagtggctggtactctc
ctgaataattctgactgaatccctttagccagaaactctctctctctctg
tctctgtctgtctatctgtctgtctgtcttctctctcttcaaaccagggt
ttctgtgtcaccctgtccgtgctggaactctgtagaccaggctggcttta
atgcagagtcccacttgcctctgccttcccagctctgagaatagaacatg
tgtccccacttgcccct
aaggctggcctagcctacatgagagcctttggaagaaagtaaataaataa
acaaagccttattctctgtgttagcagccactagggaaacgcagcaaact
atacttggatatccctcgcatccacccacttggagtagttatctagaccc
taggaaccagctggtgttggtggcaagggcctgtaaccgcggcacttggg
agatttagagcaagaagatgaagagttgggtctatcctgggcaatgtcat
gagactgtgtctgagagaaagagagagaggggggagggagggagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_46767487_46768604
seq2: B6Ng01-188C24.b_48_1164

seq1  GAATTCAACAGTCCTGCACACTACCACTGCCCTCATCCTTCTAGGAAGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACAGTCCTGCACACTACCACTGCCCTCATCCTTCTAGGAAGGG  50

seq1  TCCTGAACAACGTCTTCAATGAAGACTCCGAACACAAAATGTTACCTGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAACAACGTCTTCAATGAAGACTCCGAACACAAAATGTTACCTGGT  100

seq1  TCATTTATTAAAGAAACAGTGAAATATGTGGACCTGTAGTGAGGCAGCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTATTAAAGAAACAGTGAAATATGTGGACCTGTAGTGAGGCAGCAG  150

seq1  AGGGTAAAAGAGACCAGGGCAAGGCAGCCCAGTTGGCCAGCCCCAAACTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTAAAAGAGACCAGGGCAAGGCAGCCCAGTTGGCCAGCCCCAAACTG  200

seq1  ACAGAAGAGCCAGCATCAGGCGCATCCCTGAGGTGCAGACCCACTTTCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAGAGCCAGCATCAGGCGCATCCCTGAGGTGCAGACCCACTTTCTC  250

seq1  CCACCTTGGGAGCCTCAGTCAGCTACTCTAGAGGACTCCAAAGTAGAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTTGGGAGCCTCAGTCAGCTACTCTAGAGGACTCCAAAGTAGAGAT  300

seq1  CATGTTATCCTGAGGGCCCTTCCGAAGGGGGGTTCCCAGGGAAGGAGCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTATCCTGAGGGCCCTTCCGAAGGGGGGTTCCCAGGGAAGGAGCCT  350

seq1  AGACCCTAGAAGCAGCAATCTACCACATACACCGCTCCCTCTTCACCATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCTAGAAGCAGCAATCTACCACATACACCGCTCCCTCTTCACCATC  400

seq1  CTATTGAGTTGGGGAAGAGACAGGAGCCATGGGGAATGCTGTAAGGGCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGAGTTGGGGAAGAGACAGGAGCCATGGGGAATGCTGTAAGGGCTG  450

seq1  TGGGGACCCAGCAGACTAAAAGAGGGAGTTGAATGTCAGCTACTTGAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGACCCAGCAGACTAAAAGAGGGAGTTGAATGTCAGCTACTTGAAGA  500

seq1  AAGGTCCACAGTGCTGGCGCTGAGGCCCCGGGAGACCTGAAAGAGACCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCCACAGTGCTGGCGCTGAGGCCCCGGGAGACCTGAAAGAGACCAG  550

seq1  CAACCACACATCACTGCAAACTCCTGGAGTCTGCCTGCTCTGCAGAGACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCACACATCACTGCAAACTCCTGGAGTCTGCCTGCTCTGCAGAGACT  600

seq1  AAAGATGGAATTTCTAACCTCAACCTAAGCTCTAGGACTTTGCTTAGGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATGGAATTTCTAACCTCAACCTAAGCTCTAGGACTTTGCTTAGGCA  650

seq1  CGGTCTACTGGAGGAGCTACGGGACGAAACCTGGGCAAGAATGCTGGCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTCTACTGGAGGAGCTACGGGACGAAACCTGGGCAAGAATGCTGGCTT  700

seq1  GCACAGTGAATGAGCTGACCCAAGAGCTCACTGTGTTGAACTGGCTGGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGTGAATGAGCTGACCCAAGAGCTCACTGTGTTGAACTGGCTGGCA  750

seq1  GTGTTGCCTGCTTTCTCTAAGGGAGACTTCATGCTGCTGGTGTTCCTACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGCCTGCTTTCTCTAAGGGAGACTTCATGCTGCTGGTGTTCCTACT  800

seq1  TCCTCACTGAGACCTCAAGGGAAGGAGTAAGACACGGCCAGCAGCTCTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCACTGAGACCTCAAGGGAAGGAGTAAGACACGGCCAGCAGCTCTAA  850

seq1  GTCACTCTGAATTATTACCAGCTTAGAGAGCACCAGTGGCTGGTACTCTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTCTGAATTATTACCAGCTTAGAGAGCACCAGTGGCTGGTACTCTC  900

seq1  CTGAATAATTCTGACTGAAT-CCTTTAGCCAGAAACTCTCTCTCTCTCTG  949
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CTGAATAATTCTGACTGAATCCCTTTAGCCAGAAACTCTCTCTCTCTCTG  950

seq1  TCTCTGTCTGTCTATCTGTCTGTCTGTCTTTCTCTTCTCTTTCAAACCA-  998
      |||||||||||||||||||||||||||| ||||| |||| ||||||||| 
seq2  TCTCTGTCTGTCTATCTGTCTGTCTGTC-TTCTC-TCTC-TTCAAACCAG  997

seq1  GGTTTCTGTGTCACCCTGTCCGTGCTGGAACTCTGTAGACCAGGCTGGCT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCTGTGTCACCCTGTCCGTGCTGGAACTCTGTAGACCAGGCTGGCT  1047

seq1  TTAAATGCAGAGTCCCACTTGCCTCTGCTTCCCCAGCTCTGAGATTAG-A  1097
      || ||||||||||||||||||||||||| | ||||||||||||| ||| |
seq2  TT-AATGCAGAGTCCCACTTGCCTCTGCCTTCCCAGCTCTGAGAATAGAA  1096

seq1  CATGTGTCCCCCACTGCCCCT  1118
      |||||||||||   |||||||
seq2  CATGTGTCCCCACTTGCCCCT  1117

seq1: chr17_46902899_46903193
seq2: B6Ng01-188C24.g_72_366 (reverse)

seq1  CCTCCCTCCCTCCCCCCTCTCTCTCTTTCTCTCAGACACAGTCTCATGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCTCCCTCCCCCCTCTCTCTCTTTCTCTCAGACACAGTCTCATGAC  50

seq1  ATTGCCCAGGATAGACCCAACTCTTCATCTTCTTGCTCTAAATCTCCCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCCCAGGATAGACCCAACTCTTCATCTTCTTGCTCTAAATCTCCCAA  100

seq1  GTGCCGCGGTTACAGGCCCTTGCCACCAACACCAGCTGGTTCCTAGGGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCGCGGTTACAGGCCCTTGCCACCAACACCAGCTGGTTCCTAGGGTC  150

seq1  TAGATAACTACTCCAAGTGGGTGGATGCGAGGGATATCCAAGTATAGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATAACTACTCCAAGTGGGTGGATGCGAGGGATATCCAAGTATAGTTT  200

seq1  GCTGCGTTTCCCTAGTGGCTGCTAACACAGAGAATAAGGCTTTGTTTATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCGTTTCCCTAGTGGCTGCTAACACAGAGAATAAGGCTTTGTTTATT  250

seq1  TATTTACTTTCTTCCAAAGGCTCTCATGTAGGCTAGGCCAGCCTT  295
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTACTTTCTTCCAAAGGCTCTCATGTAGGCTAGGCCAGCCTT  295