BAC Information

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BAC

Clone NameB6Ng01-189M17
Chromosome17 (Build37)
Map Location 50,023,570 - 50,158,973
singlet/doubletdoublet
Overlap geneKif6, EG668470, Rftn1
Upstream geneLrfn2, 1700008K24Rik, LOC672972, Mocs1, Daam2
Downstream geneEG668475, EG628747, LOC100043818, Dazl, Plcl2, EG654432, Tbc1d5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-189M17.bB6Ng01-189M17.g
ACCGA013720GA013721
length8721,060
definitionB6Ng01-189M17.b B6Ng01-189M17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,158,111 - 50,158,973)(50,023,570 - 50,024,985)
sequence
gaattcaccaaccctggctaccaaggagtcttggaactgtgagaaaatgg
aattttctacgcattacatatattttcatctgttccccctttcctacata
aaaataacaaaaacagagacaaaaacaaaaaacaaaaacccttattccct
ttgaaggttttgagagccaaagttgtctaaaacgagatgactagtctctg
aggctctattatgttagcctaattacacatcagcaaaatgtttttctggg
gcattgtgcaaaaaacaaagagcaaaacaacatctccagccggccagccc
gtctgtccctccctctggttggcaggctctctgtcctgtgtgatgggatg
cctgggggagcgtagatagcagggcagctctgtgtgggcctcagagaggt
ttactctctcctcagagagcatgggggaggccagctgttttctgctcctt
cctgcttcccccatggttcatgggcttccaacccatgtgcctgttcacca
tggtctgggatccacagctttggccagtgtgagccagtttgaactgtggt
actgccgtagcctaccctcagagatactaaggggcaaactggggttttct
gacagacccactactttccattggatagtagaggtgaaatgtctcttttc
accttggcatttctcctcctgccttagattttgggcacccttatctaaga
atatgatctccatttgtcccgtgtcgtcctctgtttccctaccttcacca
gggagcccggttcctagctttcattccttccctgcaattttcccccccac
ccccctcccacccctcccttggccatcctttccatatctctctgaatgag
accgaattaagcatttatattc
gaattcactggttagctaaggaaatgcctgactgctctgataccctgtct
ggtatgggagaacaactgagcctactgcttcctgccatgctgggcccagg
ccaagtgacggctatgttaggccccacagtctatactctacagaagccca
gagacccctctcagtttcacagtgttgttggaattgttgtcgttgcttgc
ctgcatacctctagtgtggtcaagatggtgggacagattgctcccgggag
tcccatgagatgacctggatttcggtagactcctgctcatagccagtggt
taagttgcgcgtggccagcgggagctcggcacaggttgttgcgcttgggt
tagtgaatggcagtccttacaagccagcgcctgggtgctgaggctttgtt
ttggccctgctgcagatctgaaagtcatttcagggaaacagcatctcctt
gcctcacttagggtaagttaatacggacttcagtgagcagcctgtgtatc
ctttagtcacggaatcacctgcagagggagagaccccggctttgataagg
ccaagtcccctgtgtgtgtgaacaggaggtgtgaatatttcgtgagatga
cacctgggaggtctggtgacagtcacgtggtgtattattatttacataca
tttgggccaagcacctaaagagggccaactgcaggcagctccggcttcac
agagcgtggtcctttctgcaaacccctgagctccttcttcatcacagtgg
ccctcaaacatctgcagggcaagccggagctgtgaggacacacttctgtc
ccacaatccatctcctgtgcaggtccctgtcctcttccggaactctcttg
cacagacatttacagcgaaagggttccagagcctttagcttggtttcctt
aataatggggtggcatcgggatctccagaaggacattgctaaacaaaatc
tttaatctcagcaagtctgggaaccgggccccagctgccgcctgtgcctt
tgaacaaagcttcataaatggatttcgaaaaatcttcctcagttcaagaa
tcctcttgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_50158111_50158973
seq2: B6Ng01-189M17.b_50_921 (reverse)

seq1  GAATAT-AATGCTTAATTCTGTCTTCTTCTGAGAG-TTTGGAATGGATGG  48
      |||||| |||||||||||| ||||  ||| ||||| | ||||| ||||||
seq2  GAATATAAATGCTTAATTCGGTCTCATTCAGAGAGATATGGAAAGGATGG  50

seq1  CCAAGGGA-GGGTGGGAGGGGGGTGGGGGGGCAAA-TGCA-GGAAGGAAT  95
      |||||||| |||||||||||||||||||||| ||| |||| |||||||||
seq2  CCAAGGGAGGGGTGGGAGGGGGGTGGGGGGGAAAATTGCAGGGAAGGAAT  100

seq1  G-AAGCTAGGAACCGGGCTCCCTGGTG-AGGTAGGGAAACAGAGGACGAC  143
      | ||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GAAAGCTAGGAACCGGGCTCCCTGGTGAAGGTAGGGAAACAGAGGACGAC  150

seq1  ACGGGACAAATGGAGATCATATTCTTAGATAAGGGTGCCCAAAATCTAAG  193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGGACAAATGGAGATCATATTCTTAGATAAGGGTGCCCAAAATCTAAG  200

seq1  GCAGGAGGAG-AATGCCAAGGTGAAAAGAGACATTTCACCTCTACTATCC  242
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAGGAGAAATGCCAAGGTGAAAAGAGACATTTCACCTCTACTATCC  250

seq1  AATGGAAAGTAGTGGGTCTGTCAGAAAACCCCAGTTTGCCCCTTAGTATC  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAAAGTAGTGGGTCTGTCAGAAAACCCCAGTTTGCCCCTTAGTATC  300

seq1  TCTGAGGGTAGGCTACGGCAGTACCACAGTTCAAACTGGCTCACACTGGC  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGGGTAGGCTACGGCAGTACCACAGTTCAAACTGGCTCACACTGGC  350

seq1  CAAAGCTGTGGATCCCAGACCATGGTGAACAGGCACATGGGTTGGAAGCC  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCTGTGGATCCCAGACCATGGTGAACAGGCACATGGGTTGGAAGCC  400

seq1  CATGAACCATGGGGGAAGCAGGAAGGAGCAGAAAACAGCTGGCCTCCCCC  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAACCATGGGGGAAGCAGGAAGGAGCAGAAAACAGCTGGCCTCCCCC  450

seq1  ATGCTCTCTGAGGAGAGAGTAAACCTCTCTGAGGCCCACACAGAGCTGCC  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCTCTGAGGAGAGAGTAAACCTCTCTGAGGCCCACACAGAGCTGCC  500

seq1  CTGCTATCTACGCTCCCCCAGGCATCCCATCACACAGGACAGAGAGCCTG  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTATCTACGCTCCCCCAGGCATCCCATCACACAGGACAGAGAGCCTG  550

seq1  CCAACCAGAGGGAGGGACAGACGGGCTGGCCGGCTGGAGATGTTGTTTTG  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACCAGAGGGAGGGACAGACGGGCTGGCCGGCTGGAGATGTTGTTTTG  600

seq1  CTCTTTGTTTTTTGCACAATGCCCCAGAAAAACATTTTGCTGATGTGTAA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTGTTTTTTGCACAATGCCCCAGAAAAACATTTTGCTGATGTGTAA  650

seq1  TTAGGCTAACATAATAGAGCCTCAGAGACTAGTCATCTCGTTTTAGACAA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGCTAACATAATAGAGCCTCAGAGACTAGTCATCTCGTTTTAGACAA  700

seq1  CTTTGGCTCTCAAAACCTTCAAAGGGAATAAGGGTTTTTGTTTTTTGTTT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGCTCTCAAAACCTTCAAAGGGAATAAGGGTTTTTGTTTTTTGTTT  750

seq1  TTGTCTCTGTTTTTGTTATTTTTATGTAGGAAAGGGGGAACAGATGAAAA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTCTGTTTTTGTTATTTTTATGTAGGAAAGGGGGAACAGATGAAAA  800

seq1  TATATGTAATGCGTAGAAAATTCCATTTTCTC-CAGTTCCAAGACTCCTT  841
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TATATGTAATGCGTAGAAAATTCCATTTTCTCACAGTTCCAAGACTCCTT  850

seq1  GGTAGCCAGGGTTGGTGAATTC  863
      ||||||||||||||||||||||
seq2  GGTAGCCAGGGTTGGTGAATTC  872

seq1: chr17_50023570_50024985
seq2: B6Ng01-189M17.g_70_1129

seq1  GAATTCACTGGTTAGCTAAGGAAATGCCTGACTGCTCTGATACCCTGTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGGTTAGCTAAGGAAATGCCTGACTGCTCTGATACCCTGTCT  50

seq1  GGTATGGGAGAACAACTGAGCCTACTGCTTCCTGCCATGCTGGGCCCAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATGGGAGAACAACTGAGCCTACTGCTTCCTGCCATGCTGGGCCCAGG  100

seq1  CCAAGTGACGGCTATGTTAGGCCCCACAGTCTATACTCTACAGAAGCCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTGACGGCTATGTTAGGCCCCACAGTCTATACTCTACAGAAGCCCA  150

seq1  GAGACCCCTCTCAGTTTCACAGTGTTGTTGGAATTGTTGTCGTTGCTTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACCCCTCTCAGTTTCACAGTGTTGTTGGAATTGTTGTCGTTGCTTGC  200

seq1  CTGCATACCTCTAGTGTGGTCAAGATGGTGGGACAGATTGCTCCCGGGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATACCTCTAGTGTGGTCAAGATGGTGGGACAGATTGCTCCCGGGAG  250

seq1  TCCCATGAGATGACCTGGATTTCGGTAGACTCCTGCTCATAGCCAGTGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATGAGATGACCTGGATTTCGGTAGACTCCTGCTCATAGCCAGTGGT  300

seq1  TAAGTTGCGCGTGGCCAGCGGGAGCTCGGCACAGGTTGTTGCGCTTGGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTGCGCGTGGCCAGCGGGAGCTCGGCACAGGTTGTTGCGCTTGGGT  350

seq1  TAGTGAATGGCAGTCCTTACAAGCCAGCGCCTGGGTGCTGAGGCTTTGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGAATGGCAGTCCTTACAAGCCAGCGCCTGGGTGCTGAGGCTTTGTT  400

seq1  TTGGCCCTGCTGCAGATCTGAAAGTCATTTCAGGGAAACAGCATCTCCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCCCTGCTGCAGATCTGAAAGTCATTTCAGGGAAACAGCATCTCCTT  450

seq1  GCCTCACTTAGGGTAAGTTAATACGGACTTCAGTGAGCAGCCTGTGTATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCACTTAGGGTAAGTTAATACGGACTTCAGTGAGCAGCCTGTGTATC  500

seq1  CTTTAGTCACGGAATCACCTGCAGAGGGAGAGACCCCGGCTTTGATAAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGTCACGGAATCACCTGCAGAGGGAGAGACCCCGGCTTTGATAAGG  550

seq1  CCAAGTCCCCTGTGTGTGTGAACAGGAGGTGTGAATATTTCGTGAGATGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTCCCCTGTGTGTGTGAACAGGAGGTGTGAATATTTCGTGAGATGA  600

seq1  CACCTGGGAGGTCTGGTGACAGTCACGTGGTGTA-TATTA-TTACATACA  648
      |||||||||||||||||||||||||||||||||| ||||| |||||||||
seq2  CACCTGGGAGGTCTGGTGACAGTCACGTGGTGTATTATTATTTACATACA  650

seq1  -TTGGGCCAAGCACCTAAAGAGGGCCAACTGCAGGCAGCTCCGGCTTCAC  697
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGCCAAGCACCTAAAGAGGGCCAACTGCAGGCAGCTCCGGCTTCAC  700

seq1  AGAGCGTGGTCCTTTCTGCAAACCCCTGAGCTCCTTCTTCATCACAGTGG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCGTGGTCCTTTCTGCAAACCCCTGAGCTCCTTCTTCATCACAGTGG  750

seq1  CCCTCAAACATCTGCAGGGCAAGCCGGAGCTGTGAGGACACAC-TCTGTC  796
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CCCTCAAACATCTGCAGGGCAAGCCGGAGCTGTGAGGACACACTTCTGTC  800

seq1  CCACAAGCCATCTCCTGTGCAGGT-CCTGTCGTC-TCCGGAACTCTCTTG  844
      |||||| ||||||||||||||||| |||||| || |||||||||||||||
seq2  CCACAATCCATCTCCTGTGCAGGTCCCTGTCCTCTTCCGGAACTCTCTTG  850

seq1  CACAGACATTTACAGCGAA--GGGTCCAGAGCC-TTAGCT--GGTTCCTT  889
      |||||||||||||||||||  || ||||||||| ||||||  | ||||||
seq2  CACAGACATTTACAGCGAAAGGGTTCCAGAGCCTTTAGCTTGGTTTCCTT  900

seq1  AACAA-GGGGTGGCATCGGGATCTCCAG-AGGACA-TGCT-AACAAA---  932
      || || |||||||||||||||||||||| |||||| |||| ||||||   
seq2  AATAATGGGGTGGCATCGGGATCTCCAGAAGGACATTGCTAAACAAAATC  950

seq1  TCTGAACTCAGCAGGTCTGG--ACCGGGGCCCAGCTGCCG-CTGTG-CTT  978
      | | | ||||||| ||||||  |||||| ||||||||||| ||||| |||
seq2  TTTAATCTCAGCAAGTCTGGGAACCGGGCCCCAGCTGCCGCCTGTGCCTT  1000

seq1  TGA--CAAGCTCCATAAGT-GATTTCGAAGA--GCTCCTCAG-TCAAG-A  1021
      |||   ||||| ||||| | ||||||||| |    ||||||| ||||| |
seq2  TGAACAAAGCTTCATAAATGGATTTCGAAAAATCTTCCTCAGTTCAAGAA  1050

seq1  GCCAC-TGAAGCAGAGAAATGAGATTTCGTACAGTTCAGGCACCAGATAA  1070
       || | ||||                                        
seq2  TCCTCTTGAA----------------------------------------  1060

seq1  CTGTGTAGAGCGCGGAGTGGAGGATCTCGGAAGAGGAGAAGCAGGGGCTA  1120
                                                        
seq2  --------------------------------------------------  1060

seq1  GAGACCTCCCCAGTAGAACAAACTCAGGCAGAAGGGCCCCCTGGCTGGCC  1170
                                                        
seq2  --------------------------------------------------  1060

seq1  TTGGCAGCAATGAGGGGACTGAGTGCCCTACCCTCTGGCTTCCTGATTTG  1220
                                                        
seq2  --------------------------------------------------  1060

seq1  AAGTATGCTATCCAGCTGCTTGAGGCGTCCTCCTGGTGTGACATCCAGAT  1270
                                                        
seq2  --------------------------------------------------  1060

seq1  AGACATCCGCCAGGGTAAAACTAAACCCTTTCTACTTGCTTTTCTGTGTT  1320
                                                        
seq2  --------------------------------------------------  1060

seq1  GCTTTGAAGCTGACTGTTCATCATAGTGACCTCCAAAAGGTCACTCAGGG  1370
                                                        
seq2  --------------------------------------------------  1060

seq1  ATATCCTCTCCTGTACTATCCTTTGAGAAAGAATCCTCCCATTGAA  1416
                                                    
seq2  ----------------------------------------------  1060