BAC Information

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BAC

Clone NameB6Ng01-189O22
Chromosome17 (Build37)
Map Location 84,063,593 - 84,226,220
singlet/doubletdoublet
Overlap geneMta3
Upstream geneLOC100043711, LOC100043900, AW548124, EG545226, Eml4, Cox7a2l, Kcng3
Downstream geneHaao, Zfp36l2, Thada, Plekhh2, Dync2li1, Abcg5, Abcg8, Lrpprc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-189O22.bB6Ng01-189O22.g
ACCGA013823GA013824
length6991,081
definitionB6Ng01-189O22.b B6Ng01-189O22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,225,521 - 84,226,220)(84,063,593 - 84,064,679)
sequence
gaattcatagccctttgcctgagatctccacaccaagatccaggtcagaa
acttctctctcccagcctccagattaggatcatgggtatgcctaccaatt
ctggattgtagttcattccagatacagtcaagttgacaaccaggaatagc
cactacaatccaccccttgtcaacttgacacaaataatatctcatgtcca
ctcaagcaacatccctccatggcctctgcatcagctcctgcttgagttcc
agtcctgacttcctttgatgatgaacagcaatatggaagtgtaagctgaa
taaaccctttcctccacaacttacttcttggtcatgatgtttgtgcagga
attcaaaccctgagtaagacagaagaagaatgagctagctgtaataaaca
ctgtatgccaggctctggtctaagcaccagacatgtgctaatttctttag
ccccaagatagatactgctatcccattttacagatgagaattctgaggta
cacagaggttgggtgacttcccaaggattgtaaatgatatgctggcttga
gtctggatactcaactgtgaactaaagggagtgggtgggtgtgtgaatcc
tgcctgtctactgaacgaatgcgtgcgctctatatagatcgctctctctc
tctctctctcactctggtcagaagctgtgtctgggccagggtgtcacaa
gaattccttccccctacccccatcccttctccctcttggtttgggccaga
gcttctcattacagatggttgtgagccaccatgtgtttgctgggatttga
actcatgacctccggaagggcagtccgtgctcttaaccgctgagccatct
cactagccccctaggatttctttttaagaccagtatttgaatttgtcctt
gcagaaagatgcaaagaaactaatgggctcagagtcacactaaccacagt
gagatgaaaagaagggtcccgccgggcagtggtggcgcacacctttaatc
ccagcacttgggaggcagaggcaggcggatttctgagttcgaggccagcc
tggtctacagagagagttccaggacagccagggctacagagaaactctgt
ctcaaaaaacaaaccaaaaaaaaaagaaaccgaaccaagaaaagaaaaga
aaagaagaagctactctttattttcttttaagggaaagaaaaagagcttg
gtttttggaacacaaaaccattaactgcagcgaacagctagaattaaggc
accccacaacgcacgctcttaaattgtaagaggggataggagtcaccttg
gatttcttccttgtcacatgctaatgaggtcgctgtgctcacactaacgt
cactggggcaaattagctccgggatgtgcagggccctcactgggcaggcg
gtttggggactaaaattgaggactccaccctcatgtcctacgtgctttga
agaccctgttctccttggatctgctcgaagcatcccctgacatgcaactt
gaaaccagatagtcgttgtctaggacatgagccattgctgtgcagagaca
ccatgaacgagcgcaactcttataaaagactgtatttaactggcggtctg
cttaccgtttgcagaaggctagttacactatcatgacaggtatcaggcat
ggtgtctgaaagtattaagagctacctcctggtctgtaaacgaaaaaagg
aaaaagaaatctctagcctgactagaatttgaaacataagagactggcaa
tacgacatctagatgctgcctatcagcacaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_84225521_84226220
seq2: B6Ng01-189O22.b_40_738 (reverse)

seq1  TTGTGACACCCTGGCCCAGACACAGCTTCTGACCAGGTTTATAGCAAGCA  50
      ||||||||||||||||||||||||||||||||||||  | | ||  ||  
seq2  TTGTGACACCCTGGCCCAGACACAGCTTCTGACCAGAGTGAGAGAGAGAG  50

seq1  TGA-ATCCCCATCTCTCTAAAACACACCCCTTCCTGCTGTAGACAGGCTG  99
       || |   | |||| | || | | ||| | ||| | | |||||||||| |
seq2  AGAGAGAGCGATCTATATAGAGCGCACGCATTCGTTCAGTAGACAGGCAG  100

seq1  GATTCACACACCCACCCACTCCCTTTAGTTTACAGTTGAGTATCCAGACT  149
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GATTCACACACCCACCCACTCCCTTTAGTTCACAGTTGAGTATCCAGACT  150

seq1  CAAGCCAGACTATCATTTACAAACCTTGGGAAGTCACCCAACCTCTCTGT  199
      ||||||||  |||||||||||| ||||||||||||||||||||||| |||
seq2  CAAGCCAGCATATCATTTACAATCCTTGGGAAGTCACCCAACCTCTGTGT  200

seq1  ACCTCAGAATTCTCATCTGTAAAATGGGATAGCAGTATCTATCTTGGGGC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCAGAATTCTCATCTGTAAAATGGGATAGCAGTATCTATCTTGGGGC  250

seq1  TAAAGAAATTAGCACATGTCTGGTGCTTAGACCAGAGCCTGGCATACAGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAAATTAGCACATGTCTGGTGCTTAGACCAGAGCCTGGCATACAGT  300

seq1  GTTTATTACAGCTAGCTCATTCTTCTTCTGTCTTACTCAGGGTTTGAATT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATTACAGCTAGCTCATTCTTCTTCTGTCTTACTCAGGGTTTGAATT  350

seq1  CCTGCACAAACATCATGACCAAGAAGTAAGTTGTGGAGGAAAGGGTTTAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCACAAACATCATGACCAAGAAGTAAGTTGTGGAGGAAAGGGTTTAT  400

seq1  TCAGCTTACACTTCCATACTGCTGTTCATCATCAAAGGAAGTCAGGACTG  449
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TCAGCTTACACTTCCATATTGCTGTTCATCATCAAAGGAAGTCAGGACTG  450

seq1  GAACTCAAGCAGGAGCTGATGCAGAGGCCATGGAGGGATGTTGCTTGAGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCAAGCAGGAGCTGATGCAGAGGCCATGGAGGGATGTTGCTTGAGT  500

seq1  GGACATGAGATATTATTTGTGTCAAGTTGACAAGGGGTGGATTGTAGTGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATGAGATATTATTTGTGTCAAGTTGACAAGGGGTGGATTGTAGTGG  550

seq1  CTATTCCTGGTTGTCAACTTGACTGTATCTGGAATGAACTACAATCCAGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCCTGGTTGTCAACTTGACTGTATCTGGAATGAACTACAATCCAGA  600

seq1  ATTGGTAGGCATACCCATGATCCTAATCTGGAGGCTGGGAGAGAGAAGTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTAGGCATACCCATGATCCTAATCTGGAGGCTGGGAGAGAGAAGTT  650

seq1  TCTGACCTGGATCTTGGTGTGGAGATCTTGAGGCAAAGTGGCTATGAATT  699
      ||||||||||||||||||||||||||| | |||||||| |||||||||||
seq2  TCTGACCTGGATCTTGGTGTGGAGATC-TCAGGCAAAG-GGCTATGAATT  698

seq1  C  700
      |
seq2  C  699

seq1: chr17_84063593_84064679
seq2: B6Ng01-189O22.g_63_1143

seq1  GAATTCCTTCCCCCTACCCCCATCCCTTCTCCCTCTTGGTTTGGGCCAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTCCCCCTACCCCCATCCCTTCTCCCTCTTGGTTTGGGCCAGA  50

seq1  GCTTCTCATTACAGATGGTTGTGAGCCACCATGTGTTTGCTGGGATTTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTCATTACAGATGGTTGTGAGCCACCATGTGTTTGCTGGGATTTGA  100

seq1  ACTCAGGACCTCCGGAAGGGCAGTCCGTGCTCTTAACCGCTGAGCCATCT  150
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATGACCTCCGGAAGGGCAGTCCGTGCTCTTAACCGCTGAGCCATCT  150

seq1  CACTAGCCCCCTAGGATTTCTTTTTAAGACCAGTATTTGAATTTGTCCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAGCCCCCTAGGATTTCTTTTTAAGACCAGTATTTGAATTTGTCCTT  200

seq1  GCAGAAAGATGCAAAGAAACTAATGGGCTCAGAGTCACACTAACCACAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAAGATGCAAAGAAACTAATGGGCTCAGAGTCACACTAACCACAGT  250

seq1  GAGATGAAAAGAAGGGTCCCGCCGGGCAGTGGTGGCGCACACCTTTAATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGAAAAGAAGGGTCCCGCCGGGCAGTGGTGGCGCACACCTTTAATC  300

seq1  CCAGCACTTGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCACTTGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCC  350

seq1  TGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACAGAGAAACTCTGT  400
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TGGTCTACAGAGAGAGTTCCAGGACAGCCAGGGCTACAGAGAAACTCTGT  400

seq1  CTCAAAAAACAAACCAAAAAAAAAAAAAAAAAAAAAAAGAAAAGAAAAGA  450
      ||||||||||||||||||||||||| |||   ||  ||||||||||||||
seq2  CTCAAAAAACAAACCAAAAAAAAAAGAAACCGAACCAAGAAAAGAAAAGA  450

seq1  AAAGAAGAAGCTACTCTTTATTTTCTTTTAAGGGAAAAAAAAAGAGCTTG  500
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AAAGAAGAAGCTACTCTTTATTTTCTTTTAAGGGAAAGAAAAAGAGCTTG  500

seq1  GTTTTTGGAACAGAAAACCATTAACTGCAGCGAACAGCAAGAATTAAGGC  550
      |||||||||||| ||||||||||||||||||||||||| |||||||||||
seq2  GTTTTTGGAACACAAAACCATTAACTGCAGCGAACAGCTAGAATTAAGGC  550

seq1  ACCCCACAACGCAGGCTCTTAAATTGTAAGAGGGGATAGGAGTCACCTTG  600
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ACCCCACAACGCACGCTCTTAAATTGTAAGAGGGGATAGGAGTCACCTTG  600

seq1  GATTTCTTCCTTGTCACATGCTAATGAGGTCGCTGTGCTCAGAGTAAGGT  650
      ||||||||||||||||||||||||||||||||||||||||| | ||| ||
seq2  GATTTCTTCCTTGTCACATGCTAATGAGGTCGCTGTGCTCACACTAACGT  650

seq1  CACTGGGG-AAATTAGCTCAGGGGATGTGCAGGGCCCTCACT-GGCAGGC  698
      |||||||| ||||||||||  ||||||||||||||||||||| |||||||
seq2  CACTGGGGCAAATTAGCTC-CGGGATGTGCAGGGCCCTCACTGGGCAGGC  699

seq1  GGTTTGGGGACTAAAATT-AGGACTCCACCCTC-TGGCCTACGTGCTTTG  746
      |||||||||||||||||| |||||||||||||| || |||||||||||||
seq2  GGTTTGGGGACTAAAATTGAGGACTCCACCCTCATGTCCTACGTGCTTTG  749

seq1  AAGACCCTGTTCTTCCTTGGATCTGCTCGTAAGCATCCCCTGACATGCAA  796
      |||||||||||| |||||||||||||||| ||||||||||||||||||||
seq2  AAGACCCTGTTC-TCCTTGGATCTGCTCG-AAGCATCCCCTGACATGCAA  797

seq1  CTTGAAACCAGATAGTCGGTTGTCTTGGACACTGAGCCATTGCTGTGCAG  846
      ||||||||||||||||| ||||||| ||||| ||||||||||||||||||
seq2  CTTGAAACCAGATAGTC-GTTGTCTAGGACA-TGAGCCATTGCTGTGCAG  845

seq1  AGACACCATG-ACCAGGGCAACTCTTATAAAAAGAACGTATTTAACTGGG  895
      |||||||||| || || ||||||||||| ||||||  |||||||||||| 
seq2  AGACACCATGAACGAGCGCAACTCTTAT-AAAAGACTGTATTTAACTGGC  894

seq1  GGCTGGCTTACAGTTT-CAG-AGGCTAGTT-CACTATCATGACAAGGTAT  942
      ||   |||||| |||| ||| ||||||||| |||||||||||| ||||||
seq2  GGTCTGCTTACCGTTTGCAGAAGGCTAGTTACACTATCATGAC-AGGTAT  943

seq1  CAGGCATGGTG-CTGGAAAAGTAGTAGAGAGCTACCTCCT-GTCTGTAGA  990
      ||||||||||| |||  |||||| || ||||||||||||| ||||||| |
seq2  CAGGCATGGTGTCTG--AAAGTATTA-AGAGCTACCTCCTGGTCTGTAAA  990

seq1  CAGAGAGAGGAAAAAGAAACTCCGGGCCTGACATAGGATTTTGAAACATA  1040
      |  | | ||||||||||||   |  ||||||| || || |||||||||| 
seq2  CGAAAAAAGGAAAAAGAAATCTCTAGCCTGAC-TA-GAATTTGAAACAT-  1037

seq1  AAGAG-CTGGCAATACAGCATCATAGAATGCTTGCCTATCACGCACAA  1087
      ||||| ||||||||||  |||| ||| |||| ||||||||| ||||||
seq2  AAGAGACTGGCAATACGACATC-TAG-ATGC-TGCCTATCA-GCACAA  1081