BAC Information

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BAC

Clone NameB6Ng01-190A21
Chromosome17 (Build37)
Map Location 58,401,877 - 58,523,928
singlet/doubletdoublet
Overlap geneCntnap5c
Upstream geneTrip10, LOC668635, Vav1, Emr1, EG224916, LOC674419
Downstream geneLOC620408, EG545216, LOC668648, 2610034M16Rik, Nudt12, 4930505H01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-190A21.bB6Ng01-190A21.g
ACCGA013907GA013908
length1,155569
definitionB6Ng01-190A21.b B6Ng01-190A21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,401,877 - 58,403,039)(58,523,358 - 58,523,928)
sequence
gaattcatcccataaacagccaacaaacccagacactattgcatatgcca
gcaagatcttgctgacaggaccctgatatagttgtctcttgtgaggctat
gccagtgcctggcaattatagaagtggatgctcatagacatctattgaat
ggaacacagggcccttaatggaggagctagagaaagtactgaaggagctg
atggggtctgcaaccctataggaggaacaacaatatgaactaaccagtac
cccccagagcttgtgtctctagctgcatatgtagctgaggataacctagt
cagtcatcattgggaggagaggcccttggtcttgtaaagatcatatgccc
cagtaaaggggaatgccaaggccaggaagcaagagtgggtaggttgggga
gcagggctgggggaggttataggggactttcaggatagcatttgaaatgt
aaatgaagaaaatatctaataaaaaataaaataaaacaaacaacaaaacc
ctggaggggtttgctctgtgctccactcacttttttggaggggtttactc
tgtattttgtcgcatccgctctcaaccagcaagaacgacacgaccaccag
tccttctaacagcagtttattcagtcttcatctttcttctttctcttcat
ctatatccccctttaacccggggatcaatttgggagacttaccagtaccg
ttccccagctgaagagttctgaatccacgctggatccttctcaacagtct
gttttacgggaacctttattaaccactccttccccgtgatgcagttctga
atcctccctgtagcaggggttttcgctcgtgcctgaagatgtttcttgtc
cgggttttggcaccacttcttgcacacgtttattgggagagcattgattg
cataggcgaaagaagaaccccgaacaaggaaaatgatgctgcttatatac
ccctccatgtgacgtgtcagctcctgattagctgctcactcatcacccca
ctactacacccgggatggccagtgactttgcacaaatttactctgcactg
cgcacaatacttgtttacagtaggtcagcgagggctcgtgatggcattgc
tcaccgggttccacagagttagctcactcgaatcttgagtaacattttcc
ttggg

tgggacttgcttgacaactgtttgctacaggttctacacgagaccgcatt
tcaaggaaatttgtcaaaaatagtagaaaagaaggtgcagacaagtttaa
gtctctacatgtgtttctcatctaacgagtaatggtttcagatgttagac
ttcacaggggagagagaaataactgggtgtgagtggactgaaagaaatat
tggtacatctaaggcaggggtggtaaacaatatgaaagctcccccagaat
aatgaataaaatgtatgtcagattctttgtgcaagcaatagggtgatgtg
aagagtgttggatacttaggccatccactggagcaaacctaccatcctca
aaagaggatgtttctttgtctcccacatgaagatgggagggaatgtgttg
tagggtatgaggtgaatttagaaatttaagtgtggagacatgattatatt
cactataaacaaatataaaattgtataggataaagtgtgataatacaaaa
actaaaattttccccttggttttaataaaaatacctgaatagtaaaggtt
atgcttgtattaaactaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_58401877_58403039
seq2: B6Ng01-190A21.b_43_1197

seq1  GAATTCATCCCATAAACAGCCAACAAACCCAGACACTATTGCATATGCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCCCATAAACAGCCAACAAACCCAGACACTATTGCATATGCCA  50

seq1  GCAAGATCTTGCTGACAGGACCCTGATATAGTTGTCTCTTGTGAGGCTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGATCTTGCTGACAGGACCCTGATATAGTTGTCTCTTGTGAGGCTAT  100

seq1  GCCAGTGCCTGGCAATTATAGAAGTGGATGCTCATAGACATCTATTGAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTGCCTGGCAATTATAGAAGTGGATGCTCATAGACATCTATTGAAT  150

seq1  GGAACACAGGGCCCTTAATGGAGGAGCTAGAGAAAGTACTGAAGGAGCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACACAGGGCCCTTAATGGAGGAGCTAGAGAAAGTACTGAAGGAGCTG  200

seq1  ATGGGGTCTGCAACCCTATAGGAGGAACAACAATATGAACTAACCAGTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGTCTGCAACCCTATAGGAGGAACAACAATATGAACTAACCAGTAC  250

seq1  CCCCCAGAGCTTGTGTCTCTAGCTGCATATGTAGCTGAGGATAACCTAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCAGAGCTTGTGTCTCTAGCTGCATATGTAGCTGAGGATAACCTAGT  300

seq1  CAGTCATCATTGGGAGGAGAGGCCCTTGGTCTTGTAAAGATCATATGCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCATCATTGGGAGGAGAGGCCCTTGGTCTTGTAAAGATCATATGCCC  350

seq1  CAGTAAAGGGGAATGCCAAGGCCAGGAAGCAAGAGTGGGTAGGTTGGGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAAAGGGGAATGCCAAGGCCAGGAAGCAAGAGTGGGTAGGTTGGGGA  400

seq1  GCAGGGCTGGGGGAGGTTATAGGGGACTTTCAGGATAGCATTTGAAATGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGCTGGGGGAGGTTATAGGGGACTTTCAGGATAGCATTTGAAATGT  450

seq1  AAATGAAGAAAATATCTAATAAAAAATAAAATAAAACAAACAACAAAACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAAGAAAATATCTAATAAAAAATAAAATAAAACAAACAACAAAACC  500

seq1  CTGGAGGGGTTTGCTCTGTGCTCCACTCACTTTTTTGGAGGGGTTTACTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGGGGTTTGCTCTGTGCTCCACTCACTTTTTTGGAGGGGTTTACTC  550

seq1  TGTATTTTGTCGCATCCGCTCTCAACCAGCAAGAACGACACGACCACCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTTTGTCGCATCCGCTCTCAACCAGCAAGAACGACACGACCACCAG  600

seq1  TCCTTCTAACAGCAGTTTATTCAGTCTTCATCTTTCTTCTTTCTCTTCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTAACAGCAGTTTATTCAGTCTTCATCTTTCTTCTTTCTCTTCAT  650

seq1  CTATATCCCCCTTTAACCCGGGGATCAATTTGGGAGACTTACCAGTACCG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATCCCCCTTTAACCCGGGGATCAATTTGGGAGACTTACCAGTACCG  700

seq1  TTCCCCAGCTGAAGAGTTCTGAATCCACGCTGGATCCTTCTCAACAGTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCAGCTGAAGAGTTCTGAATCCACGCTGGATCCTTCTCAACAGTCT  750

seq1  GTTTTACGGGAACCTTTATTAACCACTCCTTCCCCGTGATGCAGTTCTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTACGGGAACCTTTATTAACCACTCCTTCCCCGTGATGCAGTTCTGA  800

seq1  ATCCTCCCTGTAGCAGGGGGTTTTCGCTCGTGCCTGAAGATGTTTCTTGT  850
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ATCCTCCCTGTAGCA-GGGGTTTTCGCTCGTGCCTGAAGATGTTTCTTGT  849

seq1  CCCGGGTTTTGGCACCACTTCTTGCACACGTTTATTGGGAGAGCATTGAT  900
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -CCGGGTTTTGGCACCACTTCTTGCACACGTTTATTGGGAGAGCATTGAT  898

seq1  TGCATAGGCGAAAGAAGAACCCCGAACAAGGAAAATGATGCTGCTTATAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATAGGCGAAAGAAGAACCCCGAACAAGGAAAATGATGCTGCTTATAT  948

seq1  ACCCCTCCATGTGACGTGTCAGCTCCTGATTAGCTGCTCACTCATCACCC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCTCCATGTGACGTGTCAGCTCCTGATTAGCTGCTCACTCATCACCC  998

seq1  CACTACTACACCCCGGGATGGGCAGTGACTTGGCACAAATTTACTCTTGC  1050
      |||||||||| |||||||||| ||||||||| |||||||||||||| |||
seq2  CACTACTACA-CCCGGGATGGCCAGTGACTTTGCACAAATTTACTC-TGC  1046

seq1  ACCTGCGCACATTACTTGTTTACCAGTTAGGCACAGCAGAGGCTCGTGAT  1100
      | ||||||||| |||||||||| ||| ||||  ||||   ||||||||||
seq2  A-CTGCGCACAATACTTGTTTA-CAG-TAGG-TCAGCGAGGGCTCGTGAT  1092

seq1  GGCAATTGCTCACGGCTCCCCACAGTATTTAGCTCACTCCAAATCTAGA-  1149
      ||| ||||||||| |    |||||| | |||||||||| | ||||| || 
seq2  GGC-ATTGCTCACCGGGTTCCACAG-AGTTAGCTCACT-CGAATCTTGAG  1139

seq1  TA--CTTTTCCTTGGG  1163
      ||   |||||||||||
seq2  TAACATTTTCCTTGGG  1155


seq1: chr17_58523358_58523928
seq2: B6Ng01-190A21.g_61_635 (reverse)

seq1  TTTAGTTTTATAC-AGCATAACCTTTACTATTCAGGTA-TTTTATTATAA  48
      |||||||| |||| |||||||||||||||||||||||| |||||||| ||
seq2  TTTAGTTTAATACAAGCATAACCTTTACTATTCAGGTATTTTTATTAAAA  50

seq1  CCAAGGG--AAAATTTAGTTTTTGTATTATCACACTTTATCCTATACAAT  96
      |||||||  ||| |||||||||||||||||||||||||||||||||||||
seq2  CCAAGGGGAAAATTTTAGTTTTTGTATTATCACACTTTATCCTATACAAT  100

seq1  TTTATATTTGTTTATAGTGAATATAATCATGTCTCCACACTTAAATTTCT  146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATTTGTTTATAGTGAATATAATCATGTCTCCACACTTAAATTTCT  150

seq1  AAATTCACCTCATACCCTACAACACATTCCCTCCCATCTTCATGTGGGAG  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCACCTCATACCCTACAACACATTCCCTCCCATCTTCATGTGGGAG  200

seq1  ACAAAGAAACATCCTCTTTTGAGGATGGTAGGTTTGCTCCAGTGGATGGC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGAAACATCCTCTTTTGAGGATGGTAGGTTTGCTCCAGTGGATGGC  250

seq1  CTAAGTATCCAACACTCTTCACATCACCCTATTGCTTGCACAAAGAATCT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGTATCCAACACTCTTCACATCACCCTATTGCTTGCACAAAGAATCT  300

seq1  GACATACATTTTATTCATTATTCTGGGGGAGCTTTCATATTGTTTACCAC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATACATTTTATTCATTATTCTGGGGGAGCTTTCATATTGTTTACCAC  350

seq1  CCCTGCCTTAGATGTACCAATATTTCTTTCAGTCCACTCACACCCAGTTA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCCTTAGATGTACCAATATTTCTTTCAGTCCACTCACACCCAGTTA  400

seq1  TTTCTCTCTCCCCTGTGAAGTCTAACATCTGAAACCATTACTCGTTAGAT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTCTCCCCTGTGAAGTCTAACATCTGAAACCATTACTCGTTAGAT  450

seq1  GAGAAACACATGTAGAGACTTAAACTTGTCTGCACCTTCTTTTCTACTAT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAACACATGTAGAGACTTAAACTTGTCTGCACCTTCTTTTCTACTAT  500

seq1  TTTTGACAAATTTCCTTGAAATGCGGTCTCGTGTAGAACCTGTAGCAAAC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGACAAATTTCCTTGAAATGCGGTCTCGTGTAGAACCTGTAGCAAAC  550

seq1  AGTTGTCAAGCAAGTCCCAGAATTC  571
      |||||||||||||||||||||||||
seq2  AGTTGTCAAGCAAGTCCCAGAATTC  575


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