BAC Information

Click to search

BAC

Clone NameB6Ng01-190D11
Chromosome17 (Build37)
Map Location 35,885,887 - 36,052,311
singlet/doubletdoublet
Overlap geneIer3, Flot1, Tubb5, Mdc1, Nrm, 2310014H01Rik, Dhx16, 2310061I04Rik, 2610110G12Rik, Mrps18b
Upstream geneSkiv2l-ps1, LOC100043024, Cyp21a2-ps, Cyp21a1, C4a, Stk19, Dom3z, Skiv2l, Rdbp, Cfb, C2, Zbtb12, Ehmt2, Slc44a4, Neu1, 1110038B12Rik, LOC667548, Hspa1b, Hspa1a, Hspa1l, Lsm2, Vars, D17H6S56E-3, Ng23, Msh5, Clic1, Ddah2, AU023871, G6b, Ly6g6c, Ly6g6d, Ly6g6e, Bat5, Ly6g5c, Ly6g5b, Csnk2b, Bat4, D17H6S53E, Apom, LOC100043621, Bat3, Bat2, Aif1, EG667612, Lst1, Ltb, Tnf, Lta, Nfkbil1, Atp6v1g2, Bat1a, H2-D1, H2-Q1, EG667636, LOC100043066, H2-Q2, EG625285, LOC436493, H2-Q8, EG667662, H2-Q6, H2-Q7, EG667669, H2-Q10, Pou5f1, Tcf19, Cchcr1, Psors1c2, Cdsn, LOC674169, 2300002M23Rik, LOC672682, Dpcr1, EG433102, Vars2, Gtf2h4, Ddr1, LOC100043663
Downstream geneLOC100043673, Ppp1r10, LOC100043674, LOC667766, Abcf1, Prr3, Gna-rs1, H2-T24, H2-T23, H2-T22, EG547347, LOC667782, H2-Bl, EG667792, C920025E04Rik, H2-T10, LOC630294, LOC672718, ENSMUSG00000073403, LOC675325, LOC626268, EG667977, LOC625785, H2-T3, LOC100043127, EG667827, LOC435525, LOC677333, LOC100043134, LOC625881, Rpp21, Trim39, H2-M10.2, H2-M10.1, H2-M10.3, Gm318, LOC100043140, LOC674152, LOC383240, LOC224752, H2-M10.4, H2-M11, LOC667896, H2-M9, LOC620340, H2-M1, LOC667912, LOC100043158, LOC667915, H2-M10.5, H2-M10.6, Trim26, Trim15, Trim10, LOC100043164, Trim40, Trim31
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-190D11.bB6Ng01-190D11.g
ACCGA014027GA014028
length1,1091,128
definitionB6Ng01-190D11.b B6Ng01-190D11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,051,197 - 36,052,311)(35,885,887 - 35,887,027)
sequence
gaattcagaaatcctcctgcctctgcctctctgcggagtgctgggactaa
aggtgtgcgccaccacgcccagctttcttttctttttttttttttttatt
aagagatttatttattattatacataagtacaccgtagttgtcttcagac
acaccagaaggggttgtcagagctcatgggtggttgtgagccaccttgtg
gttgctgggattgctcttacccgctgagccatcttgacagccattatcaa
tcttatttccaaaagtttggcatttttttcacaccataaccaaccagtgc
tcatcaaacgcagatatttgtatgccaaggtttttaaattgtcacatccc
actaacatcttttaccttgttggcttatcctgcagggtcagcttggggcc
ctaggtagagtggttgtcagtttagcatcaacagaaatgctactttcata
gcagaaatgctattttcttgatgagttatactgacattttgtgcacacgt
tccaaactctgtccccagtgtatgataaaccaaatagttgcagcctctta
ctccctttttaggttcccctccagactctttgcaccagaggccctcctga
agaagatgctccatcctcgcttcccgtttccccatatgagagcgagcctt
ggaagtacctggattcagaaggtgcctgaggctaggggaaaggaggggaa
gatgcagcccgaagtgtctagagaagaccccttccactctcgcatgcata
agtaaactcatctggtcttgatttcagaataccacaaccgctatggctct
cgccctgtttgggctgactaccgccgcaaccacaaaggtggtgtgccacc
acagcggacccgaaagacatgtattgtgagtttctaaaggttctcatctt
aatagagtgggaagaggcctcctagaaggtatcataaattctttcctttt
ttccctccctacagcgtacataaagttgctgggaatccttgcccatctgc
cgggatcacagttgcatgtgactttaggtaggagagtcttttattccaga
taggagttgttagcctctcgccggcgcctcgagatgtcagaggtgtctca
caggtcttc
gaattcttaacacataatgctatgaaggaattaaatcctccaatttacaa
agagaaaacaagaataccaaaatgctgtgtaatcttctgtgagaaggtac
agggcttgagagagagaaggaagcaatgtaggggtttcatgtgtgtgcat
tttggatctgggaagaaatttgggggagcagcctgagagtcaaggacaga
ttaaactctgtgtacatccaccctcttctgcaccaagcaaacttacacag
agaaaggttgggctagttaaccctgtacttgatatattttttaaaaggtt
tatacacacacacacacttgtacaccatttgcaaaccacaccttctaagg
ctagaggccggtatcagatctagttatagacagattcagagctacaatat
gggtgttgggaactgagcccggtcctcttcaagagcagcaagtgttctta
actgctatactgtctctccagctcctaatacctgacttctttttataaca
aaatctcaatgcaaaaccagaagtgaaagcgtacttgtaatcccagcctt
cggagggggaagtaggaggatcaggagttcaaggtcaacttcgggtacat
agtgagttcaagaaccctttgggtcatgaaaggcaaatgaaaataggctg
ataaagctccttaaagagtcactaagggtccaaccctctgcttgacatct
tcacactgctttgtgtgccatgggtacaaggtgtaacctccacttctgga
ccacctcaggtacaagaggcccgaggaagtagcatttccggggagagagg
gtgacgacatgtcgtgagaggcagaatcgaccactctgccagagtgcatc
aagatgagctgccaagagagatggaggaggttgctgagaaatacctcttc
gagctgaggaggcagcaaactgcaaacctcgcctggaagagcagccacag
gcagcgacttgttctgttgttccccgtggtgtcagctgatgactgatagg
gaaagagtgggtgtttcatcactcaggtcatgagacacactgcaggactc
accattccttccattatgcaactgagtgcctttacggtccacacatggcc
aacacattcatatgagtgacctctccct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_36051197_36052311
seq2: B6Ng01-190D11.b_47_1155 (reverse)

seq1  GAAGA-CTGTGAGACACCTCTGACAATCTCGA-GCGCC-GCGAGGAGGCT  47
      ||||| |||||||||||||||||| ||||||| ||||| |||| ||||||
seq2  GAAGACCTGTGAGACACCTCTGAC-ATCTCGAGGCGCCGGCGA-GAGGCT  48

seq1  -ACAAATTCTAATTCTGG-ATAAAAGACTCTCCTTACCCTAAAGTCAACA  95
       |||| | |||  ||||| |||||||||||||||   ||||||||| |||
seq2  AACAACTCCTA--TCTGGAATAAAAGACTCTCCT--ACCTAAAGTC-ACA  93

seq1  TGCAACTTGTGATCCCGGCAGATTGGGCAAGGATTCCCAGCAACTTTATT  145
      |||||| ||||||||||||||| |||||||||||||||||||||||||| 
seq2  TGCAAC-TGTGATCCCGGCAGA-TGGGCAAGGATTCCCAGCAACTTTAT-  140

seq1  GTTACGCTGTAGGGGAGGGAAAAAAGGAAAGAATTTATGATACCTTCTAG  195
        ||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  -GTACGCTGTA-GGGAGGGAAAAAAGGAAAGAATTTATGATACCTTCTAG  188

seq1  GAGGCCTCTTCCCACTCTATTAAGATGAGAACC-TTAGAAACTCACAATA  244
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GAGGCCTCTTCCCACTCTATTAAGATGAGAACCTTTAGAAACTCACAATA  238

seq1  CATGTCTTTCGGGTCCGCTGTGGTGGCACACCACCTTTGTGGTTGCGGCG  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCTTTCGGGTCCGCTGTGGTGGCACACCACCTTTGTGGTTGCGGCG  288

seq1  GTAGTCAGCCCAAACAGGGCGAGAGCCATAGCGGTTGTGGTATTCTGAAA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTCAGCCCAAACAGGGCGAGAGCCATAGCGGTTGTGGTATTCTGAAA  338

seq1  TCAAGACCAGATGAGTTTACTTATGCATGCGAGAGTGGAAGGGGTCTTCT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGACCAGATGAGTTTACTTATGCATGCGAGAGTGGAAGGGGTCTTCT  388

seq1  CTAGACACTTCGGGCTGCATCTTCCCCTCCTTTCCCCTAGCCTCAGGCAC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGACACTTCGGGCTGCATCTTCCCCTCCTTTCCCCTAGCCTCAGGCAC  438

seq1  CTTCTGAATCCAGGTACTTCCAAGGCTCGCTCTCATATGGGGAAACGGGA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGAATCCAGGTACTTCCAAGGCTCGCTCTCATATGGGGAAACGGGA  488

seq1  AGCGAGGATGGAGCATCTTCTTCAGGAGGGCCTCTGGTGCAAAGAGTCTG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGAGGATGGAGCATCTTCTTCAGGAGGGCCTCTGGTGCAAAGAGTCTG  538

seq1  GAGGGGAACCTAAAAAGGGAGTAAGAGGCTGCAACTATTTGGTTTATCAT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGAACCTAAAAAGGGAGTAAGAGGCTGCAACTATTTGGTTTATCAT  588

seq1  ACACTGGGGACAGAGTTTGGAACGTGTGCACAAAATGTCAGTATAACTCA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGGGGACAGAGTTTGGAACGTGTGCACAAAATGTCAGTATAACTCA  638

seq1  TCAAGAAAATAGCATTTCTGCTATGAAAGTAGCATTTCTGTTGATGCTAA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGAAAATAGCATTTCTGCTATGAAAGTAGCATTTCTGTTGATGCTAA  688

seq1  ACTGACAACCACTCTACCTAGGGCCCCAAGCTGACCCTGCAGGATAAGCC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACAACCACTCTACCTAGGGCCCCAAGCTGACCCTGCAGGATAAGCC  738

seq1  AACAAGGTAAAAGATGTTAGTGGGATGTGACAATTTAAAAACCTTGGCAT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGGTAAAAGATGTTAGTGGGATGTGACAATTTAAAAACCTTGGCAT  788

seq1  ACAAATATCTGCGTTTGATGAGCACTGGTTGGTTATGGTGTGAAAAAAAT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATATCTGCGTTTGATGAGCACTGGTTGGTTATGGTGTGAAAAAAAT  838

seq1  GCCAAACTTTTGGAAATAAGATTGATAATGGCTGTCAAGATGGCTCAGCG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAACTTTTGGAAATAAGATTGATAATGGCTGTCAAGATGGCTCAGCG  888

seq1  GGTAAGAGCAATCCCAGCAACCACAAGGTGGCTCACAACCACCCATGAGC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAGAGCAATCCCAGCAACCACAAGGTGGCTCACAACCACCCATGAGC  938

seq1  TCTGACAACCCCTTCTGGTGTGTCTGAAGACAACTACGGTGTACTTATGT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACAACCCCTTCTGGTGTGTCTGAAGACAACTACGGTGTACTTATGT  988

seq1  ATAATAATAAATAAATCTCTTAATAAAAAAAAAAAAAAAGAAAAGAAAGC  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAATAAATAAATCTCTTAATAAAAAAAAAAAAAAAGAAAAGAAAGC  1038

seq1  TGGGCGTGGTGGCGCACACCTTTAGTCCCAGCACTCCGCAGAGAGGCAGA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCGTGGTGGCGCACACCTTTAGTCCCAGCACTCCGCAGAGAGGCAGA  1088

seq1  GGCAGGAGGATTTCTGAATTC  1115
      |||||||||||||||||||||
seq2  GGCAGGAGGATTTCTGAATTC  1109

seq1: chr17_35885887_35887027
seq2: B6Ng01-190D11.g_65_1192

seq1  GAATTCTTAACACATAATGCTATGAAGGAATTAAATCCTCCAATTTACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAACACATAATGCTATGAAGGAATTAAATCCTCCAATTTACAA  50

seq1  AGAGAAAACAAGAATACCAAAATGCTGTGTAATCTTCTGTGAGAAGGTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAACAAGAATACCAAAATGCTGTGTAATCTTCTGTGAGAAGGTAC  100

seq1  AGGGCTTGAGAGAGAGAAGGAAGCAATGTAGGGGTTTCATGTGTGTGCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTTGAGAGAGAGAAGGAAGCAATGTAGGGGTTTCATGTGTGTGCAT  150

seq1  TTTGGATCTGGGAAGAAATTTGGGGGAGCAGCCTGAGAGTCAAGGACAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGATCTGGGAAGAAATTTGGGGGAGCAGCCTGAGAGTCAAGGACAGA  200

seq1  TTAAACTCTGTGTACATCCACCCTCTTCTGCACCAAGCAAACTTACACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACTCTGTGTACATCCACCCTCTTCTGCACCAAGCAAACTTACACAG  250

seq1  AGAAAGGTTGGGCTAGTTAACCCTGTACTTGATATATTTTTTAAAAGGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGGTTGGGCTAGTTAACCCTGTACTTGATATATTTTTTAAAAGGTT  300

seq1  TATACACACACACACACTTGTACACCATTTGCAAACCACACCTTCTAAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACACACACACACACTTGTACACCATTTGCAAACCACACCTTCTAAGG  350

seq1  CTAGAGGCCGGTATCAGATCTAGTTATAGACAGATTCAGAGCTACAATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGGCCGGTATCAGATCTAGTTATAGACAGATTCAGAGCTACAATAT  400

seq1  GGGTGTTGGGAACTGAGCCCGGTCCTCTTCAAGAGCAGCAAGTGTTCTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTTGGGAACTGAGCCCGGTCCTCTTCAAGAGCAGCAAGTGTTCTTA  450

seq1  ACTGCTATACTGTCTCTCCAGCTCCTAATACCTGACTTCTTTTTATAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTATACTGTCTCTCCAGCTCCTAATACCTGACTTCTTTTTATAACA  500

seq1  AAATCTCAATGCAAAACCAGAAGTGAAAGCGTACTTGTAATCCCAGCCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTCAATGCAAAACCAGAAGTGAAAGCGTACTTGTAATCCCAGCCTT  550

seq1  CGGAGGGGGAAGTAGGAGGATCAGGAGTTCAAGGTCAACTTCGGGTACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAGGGGGAAGTAGGAGGATCAGGAGTTCAAGGTCAACTTCGGGTACAT  600

seq1  AGTGAGTTCAAGAACCCTTTGGGTCATGAAAGGCAAATGAAAATAGGCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGTTCAAGAACCCTTTGGGTCATGAAAGGCAAATGAAAATAGGCTG  650

seq1  ATAAAGCTCCTTAAAGAGTCACTAAGGGTCCAACCCTCTGCTTGACATCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGCTCCTTAAAGAGTCACTAAGGGTCCAACCCTCTGCTTGACATCT  700

seq1  TCACACTGCTTTGTGTGCCATGGGTACAAGGTGTAACCTCCACTTCTGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACTGCTTTGTGTGCCATGGGTACAAGGTGTAACCTCCACTTCTGGA  750

seq1  CCACCTCAGGTACAAGAGGCCCGAGGAAGTAGCATTTCCGGGGAGAGAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTCAGGTACAAGAGGCCCGAGGAAGTAGCATTTCCGGGGAGAGAGG  800

seq1  GTGACGACATGTCGTGAGAGGCAGAATCGACCACTCTGCCAGAGTGCATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACGACATGTCGTGAGAGGCAGAATCGACCACTCTGCCAGAGTGCATC  850

seq1  AAGATGAGCTGCCAAGAGAGATGGAGGAGGTTGCTGAGAAATACCTCTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGAGCTGCCAAGAGAGATGGAGGAGGTTGCTGAGAAATACCTCTTC  900

seq1  GAGCTGAGGAGGCAGCAAAACTGCAAACCTCGCCTGGAAGAGCAGCCACA  950
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GAGCTGAGGAGGCAGC-AAACTGCAAACCTCGCCTGGAAGAGCAGCCACA  949

seq1  GGCAGCGACTTGTTCTGTTGTTCCCCGTGGGTGTCAGCTGATGACTGATA  1000
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GGCAGCGACTTGTTCTGTTGTTCCCCGT-GGTGTCAGCTGATGACTGATA  998

seq1  GGGAAAAGAGTGGGTTGTTTCATCACCTCAGGTCATGAGACAACACTGCA  1050
      ||| |||||||||| |||||||||| ||||||||||||||| ||||||||
seq2  GGG-AAAGAGTGGG-TGTTTCATCA-CTCAGGTCATGAGAC-ACACTGCA  1044

seq1  GGGACTCAACCCATTCCTTCCATAATGCCAACCTGAGTGCTTTTTACGGT  1100
       |||||||  ||||||||||||| ||||  | ||||||||  ||||||||
seq2  -GGACTCA--CCATTCCTTCCATTATGC--AACTGAGTGC-CTTTACGGT  1088

seq1  CCACACATTGGCAAACCACATTCAATATGA-TGA-CTCTCCCT  1141
      |||||||| | |||  ||||||| |||||| ||| ||||||||
seq2  CCACACATGGCCAA--CACATTC-ATATGAGTGACCTCTCCCT  1128