BAC Information

Click to search

BAC

Clone NameB6Ng01-191J15
Chromosome17 (Build37)
Map Location 12,334,214 - 12,466,202
singlet/doubletdoublet
Overlap geneAgpat4, Tdgf1-ps2, Map3k4
Upstream genePark2
Downstream gene4732491K20Rik, LOC625753, Plg, Slc22a3, LOC100041192, Slc22a2, Slc22a1, Igf2r, Air, EG635617, Mas1, Mrgprh, Pnldc1, Mrpl18, Tcp1, Acat3, Acat2, Wtap, Sod2, Gpr31c, Tcp10c, Ttll2, Unc93a, Smok2a, Smok2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-191J15.bB6Ng01-191J15.g
ACCGA015051GA015052
length1,1561,049
definitionB6Ng01-191J15.b B6Ng01-191J15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,465,048 - 12,466,202)(12,334,214 - 12,335,257)
sequence
gaattcttggaaatacctgtcctttctgtcctacctgtcctttagcctag
ctggctagtgctgttaaaatgtaaacagaaaggcagaggtgtgacatcgg
atcagtggagcctttccgctggcatgaaggaagtgtgcgaggcttcctgt
ctgcattgacttttaatgactcctgagctgatatggcagactagtgaatc
ataatgaattggtctgtctgtcttcagtcctgttcccattcagtttcaaa
tgttaatgctcatttgtctgtgacagaagagagcaagagatgaaatctgc
acttttgctcatcactgtcttctgctttgtatgaaataatcttgccgggg
ccttaagcattcctgaagttttgcatgtgtgcagtgtgcatgggtgtttg
catgtgtgtgggcacatttgtgtgtttagatgtgtgttcatgtgtgtgtc
agtgcatgtggagggcagaggtccaccttgatttcttccttcatcgttct
gcagttcctttgttgcagcagggtctcttgctaaacctgtagctcgtgaa
ttcagtggtactccctggccactggtctcagagaccaccctgctgccacc
accaggcagcactggcttataggcagccatcatgccttcgtgacttagac
ctgggtgttagggatccagtctgcttgaatggcatttggatgtcacgcca
tctcatcccatcaggaagaatagagaccagggagatttaaacaacctgct
tctaattgaatgtattttgttaagacagaggcagggattggctgttctct
agaactcagtcgctgtcacacgtctcatgccatttcccattcttcaagtt
gaaggtggttacatcagataaggggctcaggacagacagtttgtagtatc
aatttgacagtccgttcagcgtctgtaagtataaaagaacacaagggtta
ctatagcaagaacaatgaaaatagtcatttaaaacctttacaagttccat
gttacgaaatggtcctctttttcatggtggtagcctggagtgtaaatgta
attccgagttaccaacagtgactagcttcaagtttcagagtttatactgt
tctgatgttttctttatagaaagttgaacaaccgagtctagtctccaatt
aagatt
gaattctttggctagctgtggcgtggtggcacacgcctttaatcccagca
ctcgggaggcagaggcaggtggatttctgagtttgaggccagcctggtct
acaaagtgagctccaggacagccagggctatacagagaaaccctgtctca
ggaaaaaaaaaaaaaaaaaaaatcctttggctgaaatagttgagacggca
aaagttttggacttatattttggttttggttttggagacatttgcatata
catgatgggatgtttcagatattggacccaagtctaaacttgaaattctt
gtgtgtctcgtgttcttcgcacacagtcgggaggtaatcttatacaatac
ttttaatgatgctgtgcgtgaaacaatttcctggagagatgctgggactt
tgatgcattttgtatttagattttcataggttgcttatcctatagttaaa
ccatttgggaagttgtagggaggcagatgtgaaggaaaagaggaaggctg
tctatagcaggggtgaggctagggtgtgtcttgtctgattgtactgagcc
ctgtctgtcactgatgctaaggatcataactccattagcagtggggcact
ccaggaatgtgtatggaggaccatgtgggaaggacagcagtgacccccag
caaggctgctggtctgggccatggcatctcagagatagcagaggtagaca
tgaaggtcgttggtgaggtgaatcaagtgctttgttttcagtaccaaacg
gcaatgccatcttcatgcctacttctctagcccccaagatgggatggtca
gtccacttcctcactttgatggcccccagtgggggatgtggcttactttt
gatgttcctcagccctccttcgtgttcccaccatcgcaggctttatggca
taccaacttaacggcactactacatgggtggtttgtcacgatgaagagca
cacccatggttcagttcaagttccaatacttgtgctgtcgcttcagtatt
tgaaatgtttcgttttatagctgaaatcatctctgccaggcagaatgag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_12465048_12466202
seq2: B6Ng01-191J15.b_47_1202 (reverse)

seq1  AATCTTTATGTGGAGACT-GACTCGGTGTGTTCATTTTTTCTATTAAAAA  49
      |||||| || |||||||| |||||||| ||||||   |||||||   |||
seq2  AATCTTAAT-TGGAGACTAGACTCGGT-TGTTCA-ACTTTCTAT---AAA  44

seq1  GAAAACAACAGAACAGTATAAAACTCTGAAACATGAAGCTAGTCACTGTT  99
      ||||||| ||||||||||| |||||||||||| |||||||||||||||||
seq2  GAAAACATCAGAACAGTAT-AAACTCTGAAACTTGAAGCTAGTCACTGTT  93

seq1  GTAAACTCG--AATACATTTACACT-CAGGCTACCACCATGAAAAAGAG-  145
      |  ||||||  | |||||||||||| ||||||||||||||||||||||| 
seq2  GGTAACTCGGAATTACATTTACACTCCAGGCTACCACCATGAAAAAGAGG  143

seq1  -ACATTTCGTAACATGGAACTTGT-AAGGTTTT-AATGACTATTTTCATT  192
        |||||||||||||||||||||| |||||||| ||||||||||||||||
seq2  ACCATTTCGTAACATGGAACTTGTAAAGGTTTTAAATGACTATTTTCATT  193

seq1  GTTCTTGCTATAGT-ACCCTTGTGTTCTTTTATACTTACAGACGCTGAAC  241
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GTTCTTGCTATAGTAACCCTTGTGTTCTTTTATACTTACAGACGCTGAAC  243

seq1  GGACTGTCAAATTTGATACTACAAACTGTCTGTCCTGAGCCCCTTATCTG  291
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GGACTGTCAAA-TTGATACTACAAACTGTCTGTCCTGAGCCCCTTATCTG  292

seq1  ATGTAACCACCTTCAACTTGAAGAATGGGAAATGGCATGAGACGTGTGAC  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAACCACCTTCAACTTGAAGAATGGGAAATGGCATGAGACGTGTGAC  342

seq1  AGCGACTGAGTTCTAGAGAACAGCCAATCCCTGCCTCTGTCTTAACAAAA  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGACTGAGTTCTAGAGAACAGCCAATCCCTGCCTCTGTCTTAACAAAA  392

seq1  TACATTCAATTAGAAGCAGGTTGTTTAAATCTCCCTGGTCTCTATTCTTC  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTCAATTAGAAGCAGGTTGTTTAAATCTCCCTGGTCTCTATTCTTC  442

seq1  CTGATGGGATGAGATGGCGTGACATCCAAATGCCATTCAAGCAGACTGGA  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGGGATGAGATGGCGTGACATCCAAATGCCATTCAAGCAGACTGGA  492

seq1  TCCCTAACACCCAGGTCTAAGTCACGAAGGCATGATGGCTGCCTATAAGC  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTAACACCCAGGTCTAAGTCACGAAGGCATGATGGCTGCCTATAAGC  542

seq1  CAGTGCTGCCTGGTGGTGGCAGCAGGGTGGTCTCTGAGACCAGTGGCCAG  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCTGCCTGGTGGTGGCAGCAGGGTGGTCTCTGAGACCAGTGGCCAG  592

seq1  GGAGTACCACTGAATTCACGAGCTACAGGTTTAGCAAGAGACCCTGCTGC  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTACCACTGAATTCACGAGCTACAGGTTTAGCAAGAGACCCTGCTGC  642

seq1  AACAAAGGAACTGCAGAACGATGAAGGAAGAAATCAAGGTGGACCTCTGC  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAGGAACTGCAGAACGATGAAGGAAGAAATCAAGGTGGACCTCTGC  692

seq1  CCTCCACATGCACTGACACACACATGAACACACATCTAAACACACAAATG  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCACATGCACTGACACACACATGAACACACATCTAAACACACAAATG  742

seq1  TGCCCACACACATGCAAACACCCATGCACACTGCACACATGCAAAACTTC  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCACACACATGCAAACACCCATGCACACTGCACACATGCAAAACTTC  792

seq1  AGGAATGCTTAAGGCCCCGGCAAGATTATTTCATACAAAGCAGAAGACAG  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATGCTTAAGGCCCCGGCAAGATTATTTCATACAAAGCAGAAGACAG  842

seq1  TGATGAGCAAAAGTGCAGATTTCATCTCTTGCTCTCTTCTGTCACAGACA  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGAGCAAAAGTGCAGATTTCATCTCTTGCTCTCTTCTGTCACAGACA  892

seq1  AATGAGCATTAACATTTGAAACTGAATGGGAACAGGACTGAAGACAGACA  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGCATTAACATTTGAAACTGAATGGGAACAGGACTGAAGACAGACA  942

seq1  GACCAATTCATTATGATTCACTAGTCTGCCATATCAGCTCAGGAGTCATT  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAATTCATTATGATTCACTAGTCTGCCATATCAGCTCAGGAGTCATT  992

seq1  AAAAGTCAATGCAGACAGGAAGCCTCGCACACTTCCTTCATGCCAGCGGA  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTCAATGCAGACAGGAAGCCTCGCACACTTCCTTCATGCCAGCGGA  1042

seq1  AAGGCTCCACTGATCCGATGTCACACCTCTGCCTTTCTGTTTACATTTTA  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTCCACTGATCCGATGTCACACCTCTGCCTTTCTGTTTACATTTTA  1092

seq1  ACAGCACTAGCCAGCTAGGCTAAAGGACAGGTAGGACAGAAAGGACAGGT  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCACTAGCCAGCTAGGCTAAAGGACAGGTAGGACAGAAAGGACAGGT  1142

seq1  ATTTCCAAGAATTC  1155
      ||||||||||||||
seq2  ATTTCCAAGAATTC  1156

seq1: chr17_12334214_12335257
seq2: B6Ng01-191J15.g_66_1114

seq1  GAATTCTTTGGCTAGCTG-GGCGTGGTGGCACACGCCTTTAATCCCAGCA  49
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GAATTCTTTGGCTAGCTGTGGCGTGGTGGCACACGCCTTTAATCCCAGCA  50

seq1  CTCGGGAGGCAGAGGCAGGTGGATTTCTGAGTTTGAGGCCAGCCTGGTCT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGGGAGGCAGAGGCAGGTGGATTTCTGAGTTTGAGGCCAGCCTGGTCT  100

seq1  ACAAAGTGAGCTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGTGAGCTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCA  150

seq1  GGAAAAAAAAAAAAAAAAAAAATCCTTTGGCTGAAATAGTTGAGACGGCA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAAAAAAAAAAAAAAAAATCCTTTGGCTGAAATAGTTGAGACGGCA  200

seq1  AAAGTTTTGGACTTATATTTTGGTTTTGGTTTTGGAGACATTTGCATATA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTTTGGACTTATATTTTGGTTTTGGTTTTGGAGACATTTGCATATA  250

seq1  CATGATGGGATGTTTCAGATATTGGACCCAAGTCTAAACTTGAAATTCTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATGGGATGTTTCAGATATTGGACCCAAGTCTAAACTTGAAATTCTT  300

seq1  GTGTGTCTCGTGTTCTTCGCACACAGTCGGGAGGTAATCTTATACAATAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTCTCGTGTTCTTCGCACACAGTCGGGAGGTAATCTTATACAATAC  350

seq1  TTTTAATGATGCTGTGCGTGAAACAATTTCCTGGAGAGATGCTGGGACTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATGATGCTGTGCGTGAAACAATTTCCTGGAGAGATGCTGGGACTT  400

seq1  TGATGCATTTTGTATTTAGATTTTCATAGGTTGCTTATCCTATAGTTAAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCATTTTGTATTTAGATTTTCATAGGTTGCTTATCCTATAGTTAAA  450

seq1  CCATTTGGGAAGTTGTAGGGAGGCAGATGTGAAGGAAAAGAGGAAGGCTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTGGGAAGTTGTAGGGAGGCAGATGTGAAGGAAAAGAGGAAGGCTG  500

seq1  TCTATAGCAGGGGTGAGGCTAGGGTGTGTCTTGTCTGATTGTACTGAGCC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATAGCAGGGGTGAGGCTAGGGTGTGTCTTGTCTGATTGTACTGAGCC  550

seq1  CTGTCTGTCACTGATGCTAAGGATCATAACTCCATTAGCAGTGGGGCACT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTGTCACTGATGCTAAGGATCATAACTCCATTAGCAGTGGGGCACT  600

seq1  CCAGGAATGTGTATGGAGGACCATGTGGGAAGGACAGCAGTGACCCCCAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAATGTGTATGGAGGACCATGTGGGAAGGACAGCAGTGACCCCCAG  650

seq1  CAAGGCTGCTGGTCTGGGCCATGGCATCTCAGAGATAGCAGAGGTAGACA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCTGCTGGTCTGGGCCATGGCATCTCAGAGATAGCAGAGGTAGACA  700

seq1  TGAAGGTCGTTGGTGAGGTGAATCAAGTGCTTTGTTTTCAGTACCAAACG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGTCGTTGGTGAGGTGAATCAAGTGCTTTGTTTTCAGTACCAAACG  750

seq1  GCAATGCCATCTTCATGCCTACTTCTCTAGCCCCCAAGATGGGATGGTCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGCCATCTTCATGCCTACTTCTCTAGCCCCCAAGATGGGATGGTCA  800

seq1  GTCCACTTCCTCACTTTGATGGCCCCCAGTGGGGGATGTGGC-TACTTTT  848
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GTCCACTTCCTCACTTTGATGGCCCCCAGTGGGGGATGTGGCTTACTTTT  850

seq1  GATGTTCCTCAG-CCTCCTTCGTGTTCCCACCATCGCAGGC-TTATGGCA  896
      |||||||||||| |||||||||||||||||||||||||||| ||||||||
seq2  GATGTTCCTCAGCCCTCCTTCGTGTTCCCACCATCGCAGGCTTTATGGCA  900

seq1  TACCAAC-TAACGGCACTACTACAT-GGTGG-TTGTCACGATGAAGAGCA  943
      ||||||| ||||||||||||||||| ||||| ||||||||||||||||||
seq2  TACCAACTTAACGGCACTACTACATGGGTGGTTTGTCACGATGAAGAGCA  950

seq1  CACCCAT-GTTCAGTTCAAGTT-CAATATTTGTGCTGGTCGCCTTCAGTA  991
      ||||||| |||||||||||||| ||||| ||||||| |||| ||||||||
seq2  CACCCATGGTTCAGTTCAAGTTCCAATACTTGTGCT-GTCG-CTTCAGTA  998

seq1  TTTGAAATGTTTCGTTTATTAGCTGAAATCATCTCTTGCAAGGCAGAAAT  1041
      |||||||||||||||||  |||||||||||||||| ||| |||||| |||
seq2  TTTGAAATGTTTCGTTTTATAGCTGAAATCATCTC-TGCCAGGCAG-AAT  1046

seq1  GAG  1044
      |||
seq2  GAG  1049