BAC Information

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BAC

Clone NameB6Ng01-191O15
Chromosome17 (Build37)1 (Build37)
Map Location 23,649,844 - 23,650,4823,034,234 - 3,035,331
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG210876, LOC100042656, EG628185, ENSMUSG00000046088, EG383218, EG433078, LOC100042679, A630033E08Rik, LOC671128, LOC665961, EG434701, LOC665976, LOC100042225, LOC100042234, EG665988, LOC100042248, Zfp40, LOC100042257, LOC100042261, Vmn2r-ps133, EG666002, EG638102, EG619697, EG619775, EG619788, Olfr752-ps1
Downstream geneEG666030, EG381070, Zfp213, Zfp13, Zscan10, LOC666062, Mmp25, LOC665757, BC038613, Thoc6, Hcfc1r1, Tnfrsf12a, Cldn6, Cldn9, EG666080, 1520401A03Rik, Pkmyt1, Paqr4, Kremen2, 9530082P21Rik, Flywch1, 2810417J12Rik, LOC100042865, Srrm2, Tceb2, Prss33, 4931440B09Rik, Prss32, Prss21, Dcpp1, LOC666157, Dcpp2, LOC620233, Dcpp3, Sbp, Sbpl, Tmprss8, Prss22, LOC100042414, LOC383225, Prss27, Kctd5, Pdpk1, Amdhd2, Atp6v0c, Tbc1d24, Ntn2l, 1600002H07Rik, Ccnf, Abca17, Abca3, Rnps1, Dci, Dnase1l2, E4f1, 1700012G19Rik, Gbl, 9930021D14Rik, LOC666299, Caskin1, Traf7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-191O15.bB6Ng01-191O15.g
ACCGA015291GA015292
length9851,126
definitionB6Ng01-191O15.b B6Ng01-191O15.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(23,649,844 - 23,650,482)(3,034,234 - 3,035,331)
sequence
gaattcttcaccccatccaattagtcttagagaactttttccattatttc
tttaaattttgtcctttatttttttcagcaaaaacatatccacagcaaga
gagctggttgaatatttttttacttgtaacccctgttctttgttggtttt
caattggatattttatttatttacatttcaaatgttatcccatttcctag
tttctcctctggaaacacccatcccatccccctctcattctttctattag
ggtgcttttcccacctgcactcccacttctaaatcaatgccctggcattc
ccctacaggagagcattgaaacttcactggaccaagggtctttcctccta
ttgattccagaaaaggcctttctctgctacatatgcggctggagccatgg
gtcccttccatgtgttctccttggttggtggtttagtctctggaatctct
ggggaggggcctatttaggatgataatgttcttcttcctatggggttgca
acccccttcagctccttcagacctttctccaactcctccattagggattt
tcatactcagtccaatgtttaactgggaaagcatctacctccttatttgt
caggcttctgtcagaaagcacttcttggcatctgcaatatctgagtttgg
tgtctgtatatgggatggatccccaaatagggcagtcgctggatgaattt
tccttcagtctctgctccacactttgtcccagtatttcctttgggaaata
ctgatcagagtatttggatcaattctgagttaaaaattttgagatgattg
ggtggctgcatcccccaatcagggacctccctaacctctggatatggtct
ctacctgttctccctcacctttgttgggtatttcagccaatctcatcttt
ttttttgtgttctggaagtctcttgctttcctggcatctgggacttgctg
gtagctacatccagttccccattccccattcccca
gaattcagcatagcgacacactattggcttattcaaacattaacagaaag
aacacagtgcatcaggactttgttcctgtgggctgggggcttatctttgt
tcacatagcaaccagttgatgtgtgacttttaccctgcgccaaggggcaa
tagacagaggggaggttccggccagatggtgttgacttagataatatagc
cctgctatgtcttcacagtcccctttatcttatggtcaagatgttcccag
gaatgttttaactacgaggcatacccaggtttgtttttctcttttctcag
ccccaggcagcctctaggctcacaaacaaccagcaatttctgagtactct
ttatgacttacaggtcttgaaatttcatctttctttcaagaccagcatca
tgaagagcagttaggcacactggacctcatgcaaacctccaacaggaacc
acaggccttgtgcaagcctctgtgccaggagcagctttgtagaaagcttc
cttcctagaacagctctcttgtttttaagtaaagagatgtgagtctcaat
tgtctggtatgtcttactaaatcttcccagacaagcatgggggctatgat
aagatgagtttccaggtttccaaaaaggaccagaagaagaagaagaagga
gaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaaga
agaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagtag
tagtatcagcacccagggtattcatctgtgctctcagcacagaactgctg
acagagggttggaagctagactcatcctgcatgtaagaataaggctgtta
aagccaagagcggaggatctgtctgcaactctgactgtgactataaattt
ttcctctcactatacttctggaataaaaatctctgccagaacacaccacg
ggcaataaagaaatggaataccaaattgtcacaatggtgccttccccttc
taatttagtacctttaaaactggggaaacataaaatttattagcctggga
aacaatgaatcattggaatttcattttttctaactgtgtgaatggttacc
catacctgggcttggcggtcatcaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_23649844_23650482
seq2: B6Ng01-191O15.b_47_685

seq1  GAATTCTTCACCCCATCCAATTAGTCTTAGAGATCTTCTTTCATTTTTTC  50
      ||||||||||||||||||||||||||||||||| ||| || |||| ||||
seq2  GAATTCTTCACCCCATCCAATTAGTCTTAGAGAACTTTTTCCATTATTTC  50

seq1  TTTAAATTTTGTCCTTTTTTTTTTCCTCAGCAAAAAACATATCCACAGCA  100
      ||||||||||||||||| ||||||  ||||| ||||||||||||||||||
seq2  TTTAAATTTTGTCCTTTATTTTTT--TCAGC-AAAAACATATCCACAGCA  97

seq1  ACGGAGCTGCTTGAATA-TTTTTTACTTGTAACCCCTGTTCTTTGTTGTT  149
      |  |||||| ||||||| ||||||||||||||||||||||||||||||  
seq2  AGAGAGCTGGTTGAATATTTTTTTACTTGTAACCCCTGTTCTTTGTTG-G  146

seq1  TTTTTAATTGGATATTTTATTTATTTACATTTCAAATGTTATTCCCCTTT  199
      |||| |||||||||||||||||||||||||||||||||||| |||| |||
seq2  TTTTCAATTGGATATTTTATTTATTTACATTTCAAATGTTA-TCCCATTT  195

seq1  CCTGGTTTCTCCTCTGAAAACACCCATCCCATCCCCCTCTCACTCCTTCT  249
      ||| |||||||||||| ||||||||||||||||||||||||| || ||||
seq2  CCTAGTTTCTCCTCTGGAAACACCCATCCCATCCCCCTCTCATTCTTTCT  245

seq1  ATTAGGGTGC-TCCCCCACCTGCACTCCCACTTCTAAATCAATGCCCTGG  298
      |||||||||| |  ||||||||||||||||||||||||||||||||||||
seq2  ATTAGGGTGCTTTTCCCACCTGCACTCCCACTTCTAAATCAATGCCCTGG  295

seq1  CATTCCCCTACAGTAGAGCATCGAGACTTCACCAGATCCAGGGTCTTTCC  348
      ||||||||||||| ||||||| || |||||||  || | |||||||||||
seq2  CATTCCCCTACAGGAGAGCATTGAAACTTCACTGGACCAAGGGTCTTTCC  345

seq1  TCCTATTGATTCCAGAAAAGGCCTTTCTCTGTTACATATGCAGCTGGAGC  398
      ||||||||||||||||||||||||||||||| ||||||||| ||||||||
seq2  TCCTATTGATTCCAGAAAAGGCCTTTCTCTGCTACATATGCGGCTGGAGC  395

seq1  CATGGGTCCC-TCCCTGTGTACTCCTTGGT---TGGTATAGTCCCTGAAA  444
      |||||||||| ||| ||||| |||||||||   |||| ||||| ||| ||
seq2  CATGGGTCCCTTCCATGTGTTCTCCTTGGTTGGTGGTTTAGTCTCTGGAA  445

seq1  TCTCTGGGGAGGGGTGTCTGGTAGGTTGATATTGTTCTTCTTCCTATGGG  494
      ||||||||||||||  | |  |||| ||||| ||||||||||||||||||
seq2  TCTCTGGGGAGGGGCCTAT-TTAGGATGATAATGTTCTTCTTCCTATGGG  494

seq1  GTTGCAACCCCCTTCACCTCCATCAGACCTTTCTCTAACTTCTCCATTGG  544
      |||||||||||||||| |||| ||||||||||||| |||| ||||||| |
seq2  GTTGCAACCCCCTTCAGCTCCTTCAGACCTTTCTCCAACTCCTCCATTAG  544

seq1  AGATTTTCATACTCAGTCCAATGTTTAACTGGGAAAGCATCTATCTCCTT  594
       |||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GGATTTTCATACTCAGTCCAATGTTTAACTGGGAAAGCATCTACCTCCTT  594

seq1  ATTTGTTAGGCTTCTGTCAGTAAGCACTTCTTGGCATCTGCAATA  639
      |||||| ||||||||||||| ||||||||||||||||||||||||
seq2  ATTTGTCAGGCTTCTGTCAGAAAGCACTTCTTGGCATCTGCAATA  639

seq1: chr1_3034234_3035331
seq2: B6Ng01-191O15.g_75_1193 (reverse)

seq1  TCTGATGACAGCCAAG-CAAGTTAAGGGTAACATCT---ACAGTTAGAAA  46
      ||||||||| |||||| | || || |||||||   |   |||||||||||
seq2  TCTGATGACCGCCAAGCCCAGGTATGGGTAACCATTCACACAGTTAGAAA  50

seq1  AAATGAA--TCCAATGATCATTTGTTTCC--AGCTATTAATTTTTATGTT  92
      |||||||  |||||||||   ||||||||   |||| ||| |||||||||
seq2  AAATGAAATTCCAATGATTCATTGTTTCCCAGGCTAATAAATTTTATGTT  100

seq1  T--CCAGGTTTTAAGGTAATAAATTAGAA-GGGAAGGCAC--ATGTGACA  137
      |  |||| ||| |||||| |||||||||| ||||||||||   |||||||
seq2  TCCCCAGTTTTAAAGGTACTAAATTAGAAGGGGAAGGCACCATTGTGACA  150

seq1  ATTTGGTAT--CA-TTCTTTATTGCCCGTGGTTGTGTCTTGGCAGAGATT  184
      |||||||||  || ||||||||||||||||| |||||  |||||||||||
seq2  ATTTGGTATTCCATTTCTTTATTGCCCGTGG-TGTGTTCTGGCAGAGATT  199

seq1  TT--ATCCAGAAGTATAGGTGAGAGGAAAAATTTTATAGTCACAGTCAGA  232
      ||   |||||||||||| ||||||||||||| ||||||||||||||||||
seq2  TTTATTCCAGAAGTATA-GTGAGAGGAAAAA-TTTATAGTCACAGTCAGA  247

seq1  GTTGCAGACAGATCCTCCGCTTCTTGGCTTTAACAGCCTTATTCTTACAT  282
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GTTGCAGACAGATCCTCCGC-TCTTGGCTTTAACAGCCTTATTCTTACAT  296

seq1  GCAGGATGAGTCTAGCTT-CAACCCTCTGTCAGCAGTTCTGTGCTGAGAG  331
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GCAGGATGAGTCTAGCTTCCAACCCTCTGTCAGCAGTTCTGTGCTGAGAG  346

seq1  CACAGATGAATACCCTGGGTGCTGATACTACTA------CTTCTTCTTCT  375
      |||||||||||||||||||||||||||||||||      |||||||||||
seq2  CACAGATGAATACCCTGGGTGCTGATACTACTACTTCTTCTTCTTCTTCT  396

seq1  TCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC  425
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC  446

seq1  TTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCCTTCTTCTTCTTCTTCTG  475
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCCTTCTTCTTCTTCTTCTG  496

seq1  GTCCTTTTTGGAAACCTGGAAACTCATCTTATCATAGCCCCCATGCTTGT  525
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTTTTGGAAACCTGGAAACTCATCTTATCATAGCCCCCATGCTTGT  546

seq1  CTGGGAAGATTTAGTAAGACATACCAGACAATTGAGACTCACATCTCTTT  575
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAAGATTTAGTAAGACATACCAGACAATTGAGACTCACATCTCTTT  596

seq1  ACTTAAAAACAAGAGAGCTGTTCTAGGAAGGAAGCTTTCTACAAAGCTGC  625
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAAAAACAAGAGAGCTGTTCTAGGAAGGAAGCTTTCTACAAAGCTGC  646

seq1  TCCTGGCACAGAGGCTTGCACAAGGCCTGTGGTTCCTGTTGGAGGTTTGC  675
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGCACAGAGGCTTGCACAAGGCCTGTGGTTCCTGTTGGAGGTTTGC  696

seq1  ATGAGGTCCAGTGTGCCTAACTGCTCTTCATGATGCTGGTCTTGAAAGAA  725
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGTCCAGTGTGCCTAACTGCTCTTCATGATGCTGGTCTTGAAAGAA  746

seq1  AGATGAAATTTCAAGACCTGTAAGTCATAAAGAGTACTCAGAAATTGCTG  775
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAAATTTCAAGACCTGTAAGTCATAAAGAGTACTCAGAAATTGCTG  796

seq1  GTTGTTTGTGAGCCTAGAGGCTGCCTGGGGCTGAGAAAAGAGAAAAACAA  825
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTTGTGAGCCTAGAGGCTGCCTGGGGCTGAGAAAAGAGAAAAACAA  846

seq1  ACCTGGGTATGCCTCGTAGTTAAAACATTCCTGGGAACATCTTGACCATA  875
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGGTATGCCTCGTAGTTAAAACATTCCTGGGAACATCTTGACCATA  896

seq1  AGATAAAGGGGACTGTGAAGACATAGCAGGGCTATATTATCTAAGTCAAC  925
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAAGGGGACTGTGAAGACATAGCAGGGCTATATTATCTAAGTCAAC  946

seq1  ACCATCTGGCCGGAACCTCCCCTCTGTCTATTGCCCCTTGGCGCAGGGTA  975
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCTGGCCGGAACCTCCCCTCTGTCTATTGCCCCTTGGCGCAGGGTA  996

seq1  AAAGTCACACATCAACTGGTTGCTATGTGAACAAAGATAAGCCCCCAGCC  1025
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCACACATCAACTGGTTGCTATGTGAACAAAGATAAGCCCCCAGCC  1046

seq1  CACAGGAACAAAGTCCTGATGCACTGTGTTCTTTCTGTTAATGTTTGAAT  1075
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGAACAAAGTCCTGATGCACTGTGTTCTTTCTGTTAATGTTTGAAT  1096

seq1  AAGCCAATAGTGTGTCGCTATGC  1098
      |||||||||||||||||||||||
seq2  AAGCCAATAGTGTGTCGCTATGC  1119