BAC Information

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BAC

Clone NameB6Ng01-193L13
Chromosome17 (Build37)
Map Location 36,946,673 - 37,070,289
singlet/doubletdoublet
Overlap geneH2-M10.6, Trim26, Trim15, Trim10, LOC100043164, Trim40, Trim31
Upstream geneIer3, Flot1, Tubb5, Mdc1, Nrm, 2310014H01Rik, Dhx16, 2310061I04Rik, 2610110G12Rik, Mrps18b, LOC100043673, Ppp1r10, LOC100043674, LOC667766, Abcf1, Prr3, Gna-rs1, H2-T24, H2-T23, H2-T22, EG547347, LOC667782, H2-Bl, EG667792, C920025E04Rik, H2-T10, LOC630294, LOC672718, ENSMUSG00000073403, LOC675325, LOC626268, EG667977, LOC625785, H2-T3, LOC100043127, EG667827, LOC435525, LOC677333, LOC100043134, LOC625881, Rpp21, Trim39, H2-M10.2, H2-M10.1, H2-M10.3, Gm318, LOC100043140, LOC674152, LOC383240, LOC224752, H2-M10.4, H2-M11, LOC667896, H2-M9, LOC620340, H2-M1, LOC667912, LOC100043158, LOC667915, H2-M10.5
Downstream genePpp1r11, Znrd1, 1700022C21Rik, H2-M6-ps, 2410137M14Rik, H2-M4-ps, D130003B22Rik, Zfp57, Mog, Gabbr1, Olfr90, Olfr91, Olfr92, EG224763, LOC667973, Olfr93, Olfr753-ps1, LOC630355, Ubd, Olfr94, Olfr95, Olfr96, Olfr97, Olfr754-ps1, Olfr98, H2-M3, Olfr755-ps1, Olfr99, Olfr756-ps1, Olfr101, Olfr102, Olfr103, Olfr104, GA_x5J8B7W5KGR-1115818-1115257, Olfr105, Olfr758-ps1, Olfr106, Olfr107, Olfr759-ps1, Olfr108, Olfr760-ps1, Olfr109, H2-M2, Olfr110, Olfr111, Olfr112, Olfr113, Olfr114, Olfr115, Olfr116, Olfr117, Olfr118, Olfr119, Scocp, Olfr120, Olfr1558-ps1, Olfr121, Olfr122, Olfr123, Olfr124, Olfr125, LOC672822, Olfr126, Olfr127, Olfr128
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-193L13.bB6Ng01-193L13.g
ACCGA016611GA016612
length1,104268
definitionB6Ng01-193L13.b B6Ng01-193L13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,946,673 - 36,947,765)(37,070,022 - 37,070,289)
sequence
gaattcttgtcattgttttttgctctttgagaaatgaatcccctctagtt
caggaaggtcttagactcctctgcttcccaattacaaatgttacaggcat
gcactactatgccctgctacattagaagaattctgtaagagaatattttt
agtattagataatattttacactgtcttgggttttctattgctgtaaaga
cacactgtaatagcctcatattcatgaattccatgccaatttaaaagaat
caagaagaaatgaagataccataggtttacataattaactaggacctatg
tctcaacaatgacttaaccatagccttttagatcagtggttctaaacatg
tgggtcgcgacctccttggcaaacctctgtatccacaaataattacattg
tgattaaaatacaaaattacaatcatgaagtagtaaaaaataataataat
ttgatggttgggggtcaccacagcatgagtatctatattaaatggttcca
gaattaagaaggttgaaaaccactgctttggataatgcactgagtcacat
atgccagcagcagtgggaaggccattaataagagatcagaaaacaaaaca
ggtgatcactagggaatcgctcaagcttgttccaagactcccaaaaggaa
aacctcacctccaggcaaatcataggctgcagaatgctgcaacctgacat
ctcagagcagcattcccaaccctggccccagagcctccaaccaggattga
aattgttatcatccaggactgaactcagagtcacatcactggaagtgaca
tgaaacagaggttcttacacactttcacagaactgtacagcagccaagtc
ctagatgatccctcatttatttgtagtggatctcatttccagatagctga
aaaaagggacctgccttaaggaactaactatttctccaaattgtggaacc
tgtattctgctgcacacagggatgatagaagttcctctctcttgccagcc
tgaactcatgccaatatgggttagaaaatgtattggctccctccaccctg
cttaacaaagttcaattcatcaccaatttggatccttctcagttgactta
ataa
tgggcatggcaccttaattacaatttcagtaggtaataaacaaagcttgg
gagagggcaagaggaggagttaattgctcatcttcagggagcttgtcagg
atggagggaaagacaggcaacagctcggaagcagaagctgctgaggcatt
gggattcgccgcacagatcacgtggctgtagcagaggggatgttaaatcg
gtaacctgaggcatggccttggcatcactgtaaggactttctttagtggg
ggtggggtgatgggatgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_36946673_36947765
seq2: B6Ng01-193L13.b_47_1150

seq1  GAATTCTTGTCATTGTTTTTTGCTCTTTGAGAAATGAATCCCCTCTAGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGTCATTGTTTTTTGCTCTTTGAGAAATGAATCCCCTCTAGTT  50

seq1  CAGGAAGGTCTTAGACTCCTCTGCTTCCCAATTACAAATGTTACAGGCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAGGTCTTAGACTCCTCTGCTTCCCAATTACAAATGTTACAGGCAT  100

seq1  GCACTACTATGCCCTGCTACATTAGAAGAATTCTGTAAGAGAATATTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTACTATGCCCTGCTACATTAGAAGAATTCTGTAAGAGAATATTTTT  150

seq1  AGTATTAGATAATATTTTACACTGTCTTGGGTTTTCTATTGCTGTAAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTAGATAATATTTTACACTGTCTTGGGTTTTCTATTGCTGTAAAGA  200

seq1  CACACTGTAATAGCCTCATATTCATGAATTCCATGCCAATTTAAAAGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTGTAATAGCCTCATATTCATGAATTCCATGCCAATTTAAAAGAAT  250

seq1  CAAGAAGAAATGAAGATACCATAGGTTTACATAATTAACTAGGACCTATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAGAAATGAAGATACCATAGGTTTACATAATTAACTAGGACCTATG  300

seq1  TCTCAACAATGACTTAACCATAGCCTTTTAGATCAGTGGTTCTAAACATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAACAATGACTTAACCATAGCCTTTTAGATCAGTGGTTCTAAACATG  350

seq1  TGGGTCGCGACCTCCTTGGCAAACCTCTGTATCCACAAATAATTACATTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCGCGACCTCCTTGGCAAACCTCTGTATCCACAAATAATTACATTG  400

seq1  TGATTAAAATACAAAATTACAATCATGAAGTAGTAAAAAATAATAATAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTAAAATACAAAATTACAATCATGAAGTAGTAAAAAATAATAATAAT  450

seq1  TTGATGGTTGGGGGTCACCACAGCATGAGTATCTATATTAAATGGTTCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGGTTGGGGGTCACCACAGCATGAGTATCTATATTAAATGGTTCCA  500

seq1  GAATTAAGAAGGTTGAAAACCACTGCTTTGGATAATGCACTGAGTCACAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTAAGAAGGTTGAAAACCACTGCTTTGGATAATGCACTGAGTCACAT  550

seq1  ATGCCAGCAGCAGTGGGAAGGCCATTAATAAGAGATCAGAAAACAAAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCAGCAGCAGTGGGAAGGCCATTAATAAGAGATCAGAAAACAAAACA  600

seq1  GGTGATCACTAGGGAATCGCTCAAGCTTGTTCCAAGACTCCCAAAAGGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGATCACTAGGGAATCGCTCAAGCTTGTTCCAAGACTCCCAAAAGGAA  650

seq1  AACCTCACCTCCAGGCAAATCATAGGCTGCAGAATGCTGCAACCTGACAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTCACCTCCAGGCAAATCATAGGCTGCAGAATGCTGCAACCTGACAT  700

seq1  CTCAGAGCAGCATTCCCAACCCTGGCCCCAGAGCCTCCAACCAGGATTG-  749
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CTCAGAGCAGCATTCCCAACCCTGGCCCCAGAGCCTCCAACCAGGATTGA  750

seq1  AATTGTTATCATCCAGGACTGAACTCAGAGTCACATCACTGGAAGTGACA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTTATCATCCAGGACTGAACTCAGAGTCACATCACTGGAAGTGACA  800

seq1  TG-AACAGAGGTTCTTACACAC-TTCACAGAACTGTACAGCAGCC-AGT-  845
      || ||||||||||||||||||| |||||||||||||||||||||| ||| 
seq2  TGAAACAGAGGTTCTTACACACTTTCACAGAACTGTACAGCAGCCAAGTC  850

seq1  CTAGATGAT-CCTCATTTATTTGTAGTGGATCTCA-TTCCAGATAGCTGA  893
      ||||||||| ||||||||||||||||||||||||| ||||||||||||||
seq2  CTAGATGATCCCTCATTTATTTGTAGTGGATCTCATTTCCAGATAGCTGA  900

seq1  AAAAA-GGACCTGCC-TAAGGAAC-AACTATTTCTCCAAAATGTTGAACC  940
      ||||| ||||||||| |||||||| ||||||||||||||| ||| |||||
seq2  AAAAAGGGACCTGCCTTAAGGAACTAACTATTTCTCCAAATTGTGGAACC  950

seq1  TGTA-TCTGCTGCCACACAGGGATGATAG-AGTTCTTCTTCCTGCCCAGC  988
      |||| ||||||| |||||||||||||||| ||||| |||  ||  |||||
seq2  TGTATTCTGCTG-CACACAGGGATGATAGAAGTTCCTCTCTCTTGCCAGC  999

seq1  CTGAACTCCATGCCAATAT-GGTTAG-AAATGTATTG--TTCCTCC-CAC  1033
      ||||||| ||||||||||| |||||| ||||||||||  | ||||| | |
seq2  CTGAACT-CATGCCAATATGGGTTAGAAAATGTATTGGCTCCCTCCACCC  1048

seq1  AACATAAAACAAAAAGTCCATTCATCACCAATT--GATCCCTTCTCCAGT  1081
        | |||    |||  || ||||||||||||||  ||| |||||| ||||
seq2  TGCTTAA---CAAAGTTCAATTCATCACCAATTTGGAT-CCTTCT-CAGT  1093

seq1  TGACTATAATAA  1093
      ||||| ||||||
seq2  TGACT-TAATAA  1104

seq1: chr17_37070022_37070289
seq2: B6Ng01-193L13.g_73_340 (reverse)

seq1  CCATCCCATCACCCCACCCCCACTAAAGAAAGTCCTTACAGTGATGCCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCCATCACCCCACCCCCACTAAAGAAAGTCCTTACAGTGATGCCAA  50

seq1  GGCCATGCCTCAGGTTACCGATTTAACATCCCCTCTGCTACAGCCACGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATGCCTCAGGTTACCGATTTAACATCCCCTCTGCTACAGCCACGTG  100

seq1  ATCTGTGCGGCGAATCCCAATGCCTCAGCAGCTTCTGCTTCCGAGCTGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTGCGGCGAATCCCAATGCCTCAGCAGCTTCTGCTTCCGAGCTGTT  150

seq1  GCCTGTCTTTCCCTCCATCCTGACAAGCTCCCTGAAGATGAGCAATTAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTCTTTCCCTCCATCCTGACAAGCTCCCTGAAGATGAGCAATTAAC  200

seq1  TCCTCCTCTTGCCCTCTCCCAAGCTTTGTTTATTACCTACTGAAATTGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCTCTTGCCCTCTCCCAAGCTTTGTTTATTACCTACTGAAATTGTA  250

seq1  ATTAAGGTGCCATGCCCA  268
      ||||||||||||||||||
seq2  ATTAAGGTGCCATGCCCA  268