BAC Information

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BAC

Clone NameB6Ng01-195I13
Chromosome17 (Build37)
Map Location 79,634,334 - 79,755,967
singlet/doubletdoublet
Overlap geneLOC383277, Cdc42ep3
Upstream geneCrim1, Fez2, LOC100043888, Hdac1-ps, Vit, Strn, Heatr5b, 2310002B06Rik, EG625054, Eif2ak2, 2410078J06Rik, Cebpz, 2410091C18Rik, Prkcn, LOC675425, Qpct, LOC668812
Downstream geneLOC639964, AW061290, Cyp1b1, EG668821, Arl6ip2, LOC625074, Hnrpll, Gpx4-ps, Galm, Sfrs7, 4930560E09Rik, Gemin6, Dhx57, Morn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-195I13.bB6Ng01-195I13.g
ACCGA017928GA017929
length1,1301,092
definitionB6Ng01-195I13.b B6Ng01-195I13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,754,839 - 79,755,967)(79,634,334 - 79,635,405)
sequence
gagtggaacccaggtatctgccaaaggcaacttcggagcagtcggtcatt
cggagaagggaaacagtgccgggtcccttatcttcaccgactgttttgct
tgtcaaaattctggtatcacttctgcggttttgtatttgacttccgacct
catggccgtttaacctgccaactattattttctttgaggcttttaacact
ccacccaagtattttgctttccccaacagttgtgtccgcttcctttttaa
attcatcttaacgtcgaccgtggtttaggacctgggcttaaagtgcaccc
ggtctaaggtttcagagcgattcagattgggggcacccttgtgatgaccc
cgatagcgcccagggaagccaaggtctccaggaggggctctgctttgtgc
caggatttccaggcaacctgagagtcccagggttggggccagacctggag
cgtgcgactactcggggttctagctccttttccaggtcaaccaagccggc
gggggacatcaacgccggaaaacaccaccttttcctgtctccaacctggc
ggactaagggagaaggaagagagggcgaccaattaagacaattaacatta
attctctgggttcctacagaggtccagggacagaggggcgggtcgtcctg
aggccctggctgggtgaccgacaggtgcaggtgtcgccacgggcggaatt
ttacggtccggagcagcagcagctgcgccacttgcgccgcctcgcagagc
gtcccggagagccgccacccgcttccgcagctttaggtcaatctctgaca
gacctggagggggaggagacgtcaccctcccgacaggaaaaacctgctgc
gtctgcgttctctgcgtcccgcaggctctcagcctccaccccgcgtctcc
cgcgcgtcagatccgcgctccaggttttggcgacagcttgcaaggggagc
cggctgcacgttgacagcacgcgaccctcctttccctcccgagagcttac
agctgccaggggggtcccagggagctgcgcgcgctgcgcgaccctgtcca
ggtggccctttctcccccgccgcaaggtccccatcctccgcttgcttagc
cccgacctgctatgtgggtcaggtacgaca
gaattcactctgtggaccaggctggccttgaactcagaaatccgactgcc
tctgcctcccaagtgctgggattaaagacgttcgacaccactgcccagct
cacatgttctttctcatgggtgggtatcaggttctagttttcatatctga
gtatttattttggagcgggtgtgggtagaggtccagaaaaatgaaaagga
ctacaagagacagggtgggaggggcttcagtggggtgcagaggacaatgg
gacagggtgggaggagcttcaatggggcacagaggacaatgggacagggt
gggaagggcttcagtggctggaaaggactatgggacccacatgctataaa
atagaagaggttgaaatagtggctgcagagctgtgagcaagggtggagac
gcagcagtgggaaggctgcatgagggctggggtaggacagtgagaaagat
caggcaaagtatgtcccaggtccaaaccaacaggccagtgaatcctggct
aagcctctgaaactgtaaagccacgggaaacctccaagtgagcaaaactt
ctcaggtatttcactatgacaaaagtcgaatgcacctgtcagagagaagc
ctgaatcgtcttcccatgataaaagcccagctaagatctcacctgagtga
aactgagctagaggcaaccaaggaaactgaccctgagcgcctcagctaca
gaaactgcatagagttataagtgcttcctgctacttagagctcttaagtt
tgagataacttgtttgggattttatgttgttttatttttgtttttaaatt
agcatcaaaaaaatatatatctttaaaaagatataacccactgagttcag
ccttttggctggatgtgagggccaattccattaagaggagattgaaattt
ctccagtaatacagatccctatccttaaaaaaaatttcggtttgtcatta
tttttaacagaatctaagtaacaatggtctgacactttgccgttgctcta
tcaactctttggaacacacttggacacatgttctttgttggtagagcttt
gccagctacaaggctctgcctgggattttgactctttagcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_79754839_79755967
seq2: B6Ng01-195I13.b_53_1182 (reverse)

seq1  TGTCCTACCTAACCCACCTAGCAGTGCGGGGCTTCGC-AGCGGAGGAAGG  49
      |||| ||||| |||||| ||||||  |||||||  || ||||||||| ||
seq2  TGTCGTACCTGACCCACATAGCAGGTCGGGGCTAAGCAAGCGGAGGATGG  50

seq1  GGACC-TGC-GCGGGGAAG-AAGGGCCACCT-GACCGGGTCGCCGCAGCG  95
      ||||| ||| |||||| || ||||||||||| ||| |||||| |||||||
seq2  GGACCTTGCGGCGGGGGAGAAAGGGCCACCTGGACAGGGTCG-CGCAGCG  99

seq1  CGGCCGCAGCTCCCTGGGGACCCCCTGGCAGCTGT-AGCTCTCGGGAGGG  144
      ||  ||||||||||||||  ||||||||||||||| ||||||||||||||
seq2  CG--CGCAGCTCCCTGGGACCCCCCTGGCAGCTGTAAGCTCTCGGGAGGG  147

seq1  AAAAGGAGGGTCGCGTGCTGTCAACGTGCAGCCGGCTCCCCTTGCAAGCT  194
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -AAAGGAGGGTCGCGTGCTGTCAACGTGCAGCCGGCTCCCCTTGCAAGCT  196

seq1  GTCGCCAAAACCTGGAGCGCGGATCTGACGCGCGGGAGACGCGGGGTGGA  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGCCAAAACCTGGAGCGCGGATCTGACGCGCGGGAGACGCGGGGTGGA  246

seq1  GGCTGAGAGCCTGCGGGACGCAGAGAAACGCAGACGCAGCAGGTTTTTCC  294
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GGCTGAGAGCCTGCGGGACGCAGAG-AACGCAGACGCAGCAGGTTTTTCC  295

seq1  TGTCGGGAGGGTGACGTCTCCTCCCCCTCCAGGTCTGTCAGAGATTGACC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCGGGAGGGTGACGTCTCCTCCCCCTCCAGGTCTGTCAGAGATTGACC  345

seq1  TAAAGCTGCGGAAGCGGGTGGCGGCTCTCCGGGACGCTCTGCGAGGCGGC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCTGCGGAAGCGGGTGGCGGCTCTCCGGGACGCTCTGCGAGGCGGC  395

seq1  GCAAGTGGCGCAGCTGCTGCTGCTCCGGACCGTAAAATTCCGCCCGTGGC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTGGCGCAGCTGCTGCTGCTCCGGACCGTAAAATTCCGCCCGTGGC  445

seq1  GACACCTGCACCTGTCGGTCACCCAGCCAGGGCCTCAGGACGACCCGCCC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACCTGCACCTGTCGGTCACCCAGCCAGGGCCTCAGGACGACCCGCCC  495

seq1  CTCTGTCCCTGGACCTCTGTAGGAACCCAGAGAATTAATGTTAATTGTCT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTCCCTGGACCTCTGTAGGAACCCAGAGAATTAATGTTAATTGTCT  545

seq1  TAATTGGTCGCCCTCTCTTCCTTCTCCCTTAGTCCGCCAGGTTGGAGACA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGGTCGCCCTCTCTTCCTTCTCCCTTAGTCCGCCAGGTTGGAGACA  595

seq1  GGAAAAGGTGGTGTTTTCCGGCGTTGATGTCCCCCGCCGGCTTGGTTGAC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAGGTGGTGTTTTCCGGCGTTGATGTCCCCCGCCGGCTTGGTTGAC  645

seq1  CTGGAAAAGGAGCTAGAACCCCGAGTAGTCGCACGCTCCAGGTCTGGCCC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAAAGGAGCTAGAACCCCGAGTAGTCGCACGCTCCAGGTCTGGCCC  695

seq1  CAACCCTGGGACTCTCAGGTTGCCTGGAAATCCTGGCACAAAGCAGAGCC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCCTGGGACTCTCAGGTTGCCTGGAAATCCTGGCACAAAGCAGAGCC  745

seq1  CCTCCTGGAGACCTTGGCTTCCCTGGGCGCTATCGGGGTCATCACAAGGG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTGGAGACCTTGGCTTCCCTGGGCGCTATCGGGGTCATCACAAGGG  795

seq1  TGCCCCCAATCTGAATCGCTCTGAAACCTTAGACCGGGTGCACTTTAAGC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCCCAATCTGAATCGCTCTGAAACCTTAGACCGGGTGCACTTTAAGC  845

seq1  CCAGGTCCTAAACCACGGTCGACGTTAAGATGAATTTAAAAAGGAAGCGG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTCCTAAACCACGGTCGACGTTAAGATGAATTTAAAAAGGAAGCGG  895

seq1  ACACAACTGTTGGGGAAAGCAAAATACTTGGGTGGAGTGTTAAAAGCCTC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAACTGTTGGGGAAAGCAAAATACTTGGGTGGAGTGTTAAAAGCCTC  945

seq1  AAAGAAAATAATAGTTGGCAGGTTAAACGGCCATGAGGTCGGAAGTCAAA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAATAATAGTTGGCAGGTTAAACGGCCATGAGGTCGGAAGTCAAA  995

seq1  TACAAAACCGCAGAAGTGATACCAGAATTTTGACAAGCAAAACAGTCGGT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAACCGCAGAAGTGATACCAGAATTTTGACAAGCAAAACAGTCGGT  1045

seq1  GAAGATAAGGGACCCGGCACTGTTTCCCTTCTCCGAATGACCGACTGCTC  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATAAGGGACCCGGCACTGTTTCCCTTCTCCGAATGACCGACTGCTC  1095

seq1  CGAAGTTGCCTTTGGCAGATACCTGGGTTCCACTC  1129
      |||||||||||||||||||||||||||||||||||
seq2  CGAAGTTGCCTTTGGCAGATACCTGGGTTCCACTC  1130

seq1: chr17_79634334_79635405
seq2: B6Ng01-195I13.g_65_1156

seq1  GAATTCACTCTGTGGACCAGGCTGGCCTTGAACTCAGAAATCCGACTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTGTGGACCAGGCTGGCCTTGAACTCAGAAATCCGACTGCC  50

seq1  TCTGCCTCCCAAGTGCTGGGATTAAAGACGTTCGACACCACTGCCCAGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCCCAAGTGCTGGGATTAAAGACGTTCGACACCACTGCCCAGCT  100

seq1  CACATGTTCTTTCTCATGGGTGGGTATCAGGTTCTAGTTTTCATATCTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGTTCTTTCTCATGGGTGGGTATCAGGTTCTAGTTTTCATATCTGA  150

seq1  GTATTTATTTTGGAGCGGGTGTGGGTAGAGGTCCAGAAAAATGAAAAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTATTTTGGAGCGGGTGTGGGTAGAGGTCCAGAAAAATGAAAAGGA  200

seq1  CTACAAGAGACAGGGTGGGAGGGGCTTCAGTGGGGTGCAGAGGACAATGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAAGAGACAGGGTGGGAGGGGCTTCAGTGGGGTGCAGAGGACAATGG  250

seq1  GACAGGGTGGGAGGAGCTTCAATGGGGCACAGAGGACAATGGGACAGGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGGTGGGAGGAGCTTCAATGGGGCACAGAGGACAATGGGACAGGGT  300

seq1  GGGAAGGGCTTCAGTGGCTGGAAAGGACTATGGGACCCACATGCTATAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGGGCTTCAGTGGCTGGAAAGGACTATGGGACCCACATGCTATAAA  350

seq1  ATAGAAGAGGTTGAAATAGTGGCTGCAGAGCTGTGAGCAAGGGTGGAGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAGAGGTTGAAATAGTGGCTGCAGAGCTGTGAGCAAGGGTGGAGAC  400

seq1  GCAGCAGTGGGAAGGCTGCATGAGGGCTGGGGTAGGACAGTGAGAAAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCAGTGGGAAGGCTGCATGAGGGCTGGGGTAGGACAGTGAGAAAGAT  450

seq1  CAGGCAAAGTATGTCCCAGGTCCAAACCAACAGGCCAGTGAATCCTGGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAAAGTATGTCCCAGGTCCAAACCAACAGGCCAGTGAATCCTGGCT  500

seq1  AAGCCTCTGAAACTGTAAAGCCACGGGAAACCTCCAAGTGAGCAAAACTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTCTGAAACTGTAAAGCCACGGGAAACCTCCAAGTGAGCAAAACTT  550

seq1  CTCAGGTATTTCACTATGACAAAAGTCGAATGCACCTGTCAGAGAGAAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGTATTTCACTATGACAAAAGTCGAATGCACCTGTCAGAGAGAAGC  600

seq1  CTGAATCGTCTTCCCATGATAAAAGCCCAGCTAAGATCTCACCTGAGTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATCGTCTTCCCATGATAAAAGCCCAGCTAAGATCTCACCTGAGTGA  650

seq1  AACTGAGCTAGAGGCAACCAAGGAAACTGACCCTGAGCGCCTCAGCTACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAGCTAGAGGCAACCAAGGAAACTGACCCTGAGCGCCTCAGCTACA  700

seq1  GAAACTGCATAGAGTTATAAGTGCTTCCTGCTACTTAGAGCTCTTAAGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTGCATAGAGTTATAAGTGCTTCCTGCTACTTAGAGCTCTTAAGTT  750

seq1  TGAGATAACTTGTTTGGGATTTTATGTTGTTTTATTTTTGTTTTTAAATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATAACTTGTTTGGGATTTTATGTTGTTTTATTTTTGTTTTTAAATT  800

seq1  AGCATC-AAAAAATATATATCTTTAAAAAGATATAACCCACTGAGTTCAG  849
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCAAAAAAATATATATCTTTAAAAAGATATAACCCACTGAGTTCAG  850

seq1  CCTTTTGGCTGGATGTGA-GGCCAATTCCA-TAAGAGGAGATTGAAATTT  897
      |||||||||||||||||| ||||||||||| |||||||||||||||||||
seq2  CCTTTTGGCTGGATGTGAGGGCCAATTCCATTAAGAGGAGATTGAAATTT  900

seq1  CTCCAGTAATACAGAT-CCTATCCTTAAAAAAAATTTC-GTTTGTCA-TA  944
      |||||||||||||||| ||||||||||||||||||||| |||||||| ||
seq2  CTCCAGTAATACAGATCCCTATCCTTAAAAAAAATTTCGGTTTGTCATTA  950

seq1  TTTT--ACAGAATCTAAGTAACAATGGTCTGACAC-TTGCCGTTGCTC-A  990
      ||||  ||||||||||||||||||||||||||||| |||||||||||| |
seq2  TTTTTAACAGAATCTAAGTAACAATGGTCTGACACTTTGCCGTTGCTCTA  1000

seq1  TTCACTCTT--GGACACAC-TGGGCACATGT--CTTGGTGGTAGAGCCTT  1035
      |  ||||||  | |||||| ||| |||||||   ||| ||||||||| ||
seq2  TCAACTCTTTGGAACACACTTGGACACATGTTCTTTGTTGGTAGAGCTTT  1050

seq1  GCAAGC-ACAGGGC-CTGCCTGGG--TTTGAC-CCTTAGCAT  1072
      || ||| ||| ||| |||||||||  |||||| | |||||||
seq2  GCCAGCTACAAGGCTCTGCCTGGGATTTTGACTCTTTAGCAT  1092