BAC Information

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BAC

Clone NameB6Ng01-195O11
Chromosome17 (Build37)
Map Location 26,364,809 - 26,521,699
singlet/doubletdoublet
Overlap geneItfg3, Luc7l, EG383229
Upstream geneUnkl, Gnptg, 0610007P22Rik, Ube2i, Prss34, Prss28, Prss29, LOC432543, LOC666472, Tpsab1, Mcpt6, Tpsg1, Cacna1h, Tekt4, Sstr5, LOC100042580, Sox8, Tmem112, LOC545396, Gng13, Chtf18, Rpusd1, BC052484, Msln, Narfl, Haghl, Ccdc78, BC008155, Metrn, Fbxl16, Wdr24, 2610003J06Rik, Stub1, Rhbdl1, Rhot2, Wdr90, 9530058B02Rik, 0610011F06Rik, Wfikkn1, Rab40c, LOC100043160, Pigq, F430201B04Rik, D630044L22Rik, Solh, 1700022N22Rik, Rab11fip3, Decr2, Nme4, EG666609, Tmem8, Mrpl28, Axin1, Pdia2, Arhgdig, Rgs11, LOC100042643
Downstream geneEG240055, C230078M08Rik, Dusp1, EG666668, Ergic1, Atp6v0e, A930001N09Rik, Bnip1, Nkx2-5, Kifc1, Phf1, Cuta, Syngap1, Zbtb9, Bak1, Ggnbp1, Itpr3, 2900010M23Rik, Ihpk3, Lemd2, LOC100042713, ENSMUSG00000073430
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-195O11.bB6Ng01-195O11.g
ACCGA018195GA018196
length1,147529
definitionB6Ng01-195O11.b B6Ng01-195O11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,520,549 - 26,521,699)(26,364,809 - 26,365,342)
sequence
gaattctccttcgcctcggacgtgtcactccctgattggctgcagcccat
cggccgagttgacgtcacggggaaggcagagcacaagtagtcataaaaca
cccttggcacatgcgcagattatttgtttaccacttagaacacaggatgt
cagcgccatcttgtaacggcgaatgtgggggcggctcccaacataactgc
aatcttgctattatcacaaattctaatgtaaatatctatgttttcctgtg
gtcttagatgacccctgtgaaaaagttgctcaatgcccccaacaggctga
gaactgctggtctaaggtgtccatgtaggctttcttatctgattctcata
gaaacctgcaaagcaggttttctcattatctttacttagggaaaaaaaaa
aacagccaaggaaatacaattcttggagccctggcttgcaagcaggaagg
acatggatccaaggcctgcaccctggtatgcattgcctggctcggctctg
gatcagatgcatctttctagctcactcagcaatgagaagaagggagagct
gcatgttacgtcccatcagcctcccacagggcacagactttgcccatgta
gagcttctgctcaggcctcctatgcaggaagcggccatcaggacggccaa
gtggtgagggatgaactttgtcggtgggcagccacgatgtctgatcacag
cagcccagctgcctattaatcctcaggccacagtgagttgcccgccatct
ttccaaggtaccttggccatgaaacccacatccctgaaagcatctttcaa
gactagcaggatgaaccacacatggaccagggacttcaacccagtttctt
tgccctcgctggctccgtgaacagtctctgctatgcatagtcactacacc
ctagttcctggaaggtcctgttaaagagcttagagggctctgttgaggag
acagtcagagtccctcaaaggcccggtcttcttacacatctgcttctgtg
gaactcactggtgcaaaatctccctgagagccctttgccttgggacctcc
tctccgcctggtcagcatgaaaatgctatttgcttcagactgtttccctt
tcagtgtggattaaatcaaccctgacttgcacagttctccaaagaag
actcagagggttaatgtctggggaaggggttgcgggtgccatttcctgcc
ttgaagaagacaaagctttcgagtagacaaagctttcaagtagaaacagc
aggaggagtcaaagcaacagaggaagctgagcagaaaagcctcctgacca
caggtagaatttaaaattggcaaaacgtcagggcctccctgtgcctgaga
tgacagtgactcttccatatcgccagctaaccacctagcttttcccatgc
cgacaatgaagtgttgtctctgagcctgcggcacattgtaataacctggg
gcaatcaaaggccagccgagcacagagctgaactgcctagggtgtttgcc
tggactcaagaatccccgagtttggccaggtgtggtggtgatgcacacct
ttaatcctagcactcgggaggcagaggcaggtggatttctgagttcgagg
ccagcctggtctacagagtgagtttcaaggacagtcagggctactcagag
aaaccctgtctcgaaaaaccagaaaaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_26520549_26521699
seq2: B6Ng01-195O11.b_52_1198 (reverse)

seq1  CTTCT---GAGAACCTGTGCAAAGGTCAGGGGTTGTATTTTAAACCACAC  47
      |||||   ||||| ||||||||  |||| ||||||   ||||| ||||||
seq2  CTTCTTTGGAGAA-CTGTGCAA--GTCA-GGGTTG--ATTTAATCCACAC  44

seq1  TGAAAAGGGAAACAGTCTGGAGC-AATAGCATTTCCATGCTGGACCAAGG  96
      || |||||||||||||||| ||| |||||||||| |||||| |||| |||
seq2  TG-AAAGGGAAACAGTCTGAAGCAAATAGCATTTTCATGCT-GACC-AGG  91

seq1  CGGAGAGGAGG-CCCAA-GCAAAGGGCTTCTCAGGGAGATTTTGCACCAG  144
      ||||||||||| ||||| ||||||||| ||||||||||||||||||||||
seq2  CGGAGAGGAGGTCCCAAGGCAAAGGGC-TCTCAGGGAGATTTTGCACCAG  140

seq1  TGAGTTCCACAGAAGCAGATGTGT-AGAAGAACCGGGGCCTTTGAGGGAC  193
      |||||||||||||||||||||||| ||||||  | |||||||||||||||
seq2  TGAGTTCCACAGAAGCAGATGTGTAAGAAGA--CCGGGCCTTTGAGGGAC  188

seq1  TCTGACTGTCTCCTC-ACAGAGCCCCTCTAAGCTCTTTAACAGGACC-TC  241
      ||||||||||||||| |||||| |||||||||||||||||||||||| ||
seq2  TCTGACTGTCTCCTCAACAGAG-CCCTCTAAGCTCTTTAACAGGACCTTC  237

seq1  CAGGAACTAGGGTGTAGTGACTATGCATAGCAGAGACTGTTCACGGAGCC  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAACTAGGGTGTAGTGACTATGCATAGCAGAGACTGTTCACGGAGCC  287

seq1  AGCGAGGGCAAAGAAACTGGGTTGAAGTCCCTGGTCCATGTGTGGTTCAT  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGAGGGCAAAGAAACTGGGTTGAAGTCCCTGGTCCATGTGTGGTTCAT  337

seq1  CCTGCTAGTCTTGAAAGATGCTTTCAGGGATGTGGGTTTCATGGCCAAGG  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTAGTCTTGAAAGATGCTTTCAGGGATGTGGGTTTCATGGCCAAGG  387

seq1  TACCTTGGAAAGATGGCGGGCAACTCACTGTGGCCTGAGGATTAATAGGC  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTGGAAAGATGGCGGGCAACTCACTGTGGCCTGAGGATTAATAGGC  437

seq1  AGCTGGGCTGCTGTGATCAGACATCGTGGCTGCCCACCGACAAAGTTCAT  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGGCTGCTGTGATCAGACATCGTGGCTGCCCACCGACAAAGTTCAT  487

seq1  CCCTCACCACTTGGCCGTCCTGATGGCCGCTTCCTGCATAGGAGGCCTGA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCACCACTTGGCCGTCCTGATGGCCGCTTCCTGCATAGGAGGCCTGA  537

seq1  GCAGAAGCTCTACATGGGCAAAGTCTGTGCCCTGTGGGAGGCTGATGGGA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAGCTCTACATGGGCAAAGTCTGTGCCCTGTGGGAGGCTGATGGGA  587

seq1  CGTAACATGCAGCTCTCCCTTCTTCTCATTGCTGAGTGAGCTAGAAAGAT  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAACATGCAGCTCTCCCTTCTTCTCATTGCTGAGTGAGCTAGAAAGAT  637

seq1  GCATCTGATCCAGAGCCGAGCCAGGCAATGCATACCAGGGTGCAGGCCTT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTGATCCAGAGCCGAGCCAGGCAATGCATACCAGGGTGCAGGCCTT  687

seq1  GGATCCATGTCCTTCCTGCTTGCAAGCCAGGGCTCCAAGAATTGTATTTC  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCCATGTCCTTCCTGCTTGCAAGCCAGGGCTCCAAGAATTGTATTTC  737

seq1  CTTGGCTGTTTTTTTTTTTCCCTAAGTAAAGATAATGAGAAAACCTGCTT  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCTGTTTTTTTTTTTCCCTAAGTAAAGATAATGAGAAAACCTGCTT  787

seq1  TGCAGGTTTCTATGAGAATCAGATAAGAAAGCCTACATGGACACCTTAGA  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGTTTCTATGAGAATCAGATAAGAAAGCCTACATGGACACCTTAGA  837

seq1  CCAGCAGTTCTCAGCCTGTTGGGGGCATTGAGCAACTTTTTCACAGGGGT  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAGTTCTCAGCCTGTTGGGGGCATTGAGCAACTTTTTCACAGGGGT  887

seq1  CATCTAAGACCACAGGAAAACATAGATATTTACATTAGAATTTGTGATAA  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTAAGACCACAGGAAAACATAGATATTTACATTAGAATTTGTGATAA  937

seq1  TAGCAAGATTGCAGTTATGTTGGGAGCCGCCCCCACATTCGCCGTTACAA  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAAGATTGCAGTTATGTTGGGAGCCGCCCCCACATTCGCCGTTACAA  987

seq1  GATGGCGCTGACATCCTGTGTTCTAAGTGGTAAACAAATAATCTGCGCAT  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCGCTGACATCCTGTGTTCTAAGTGGTAAACAAATAATCTGCGCAT  1037

seq1  GTGCCAAGGGTGTTTTATGACTACTTGTGCTCTGCCTTCCCCGTGACGTC  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCAAGGGTGTTTTATGACTACTTGTGCTCTGCCTTCCCCGTGACGTC  1087

seq1  AACTCGGCCGATGGGCTGCAGCCAATCAGGGAGTGACACGTCCGAGGCGA  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCGGCCGATGGGCTGCAGCCAATCAGGGAGTGACACGTCCGAGGCGA  1137

seq1  AGGAGAATTC  1151
      ||||||||||
seq2  AGGAGAATTC  1147

seq1: chr17_26364809_26365342
seq2: B6Ng01-195O11.g_64_598

seq1  GAATTCACTCAGAGGGTTAATGTCTGGGGAAGGGGTTGCGGGTGCCATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCAGAGGGTTAATGTCTGGGGAAGGGGTTGCGGGTGCCATTT  50

seq1  CCTGCCTTGAAGAAGACAAAGCTTTCGAGTAGACAAAGCTTTCAAGTAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCTTGAAGAAGACAAAGCTTTCGAGTAGACAAAGCTTTCAAGTAGA  100

seq1  AACAGCAGGAGGAGTCAAAGCAACAGAGGAAGCTGAGCAGAAAAGCCTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCAGGAGGAGTCAAAGCAACAGAGGAAGCTGAGCAGAAAAGCCTCC  150

seq1  TGACCACAGGTAGAATTTAAAATTGGCAAAACGTCAGGGCCTCCCTGTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCACAGGTAGAATTTAAAATTGGCAAAACGTCAGGGCCTCCCTGTGC  200

seq1  CTGAGATGACAGTGACTCTTCCATATCGCCAGCTAACCACCTAGCTTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGATGACAGTGACTCTTCCATATCGCCAGCTAACCACCTAGCTTTTC  250

seq1  CCATGCCGACAATGAAGTGTTGTCTCTGAGCCTGCGGCACATTGTAATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCCGACAATGAAGTGTTGTCTCTGAGCCTGCGGCACATTGTAATAA  300

seq1  CCTGGGGCAATCAAAGGCCAGCCGAGCACAGAGCTGAACTGCCTAGGGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGGCAATCAAAGGCCAGCCGAGCACAGAGCTGAACTGCCTAGGGTG  350

seq1  TTTGCCTGGACTCAAGAATCCCCGAGTTTGGCCAGGTGTGGTGGTGATGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCTGGACTCAAGAATCCCCGAGTTTGGCCAGGTGTGGTGGTGATGC  400

seq1  ACACCTTTAATCCTAGCACTCGGGAGGCAGAGGCAGGTGGATTTCTGAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTTTAATCCTAGCACTCGGGAGGCAGAGGCAGGTGGATTTCTGAGT  450

seq1  TCGAGGCCAGCCTGGTCTACAGAGTGAG-TTCAAGGACAGTCAGGGCTAC  499
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TCGAGGCCAGCCTGGTCTACAGAGTGAGTTTCAAGGACAGTCAGGGCTAC  500

seq1  ACAGAGAAACCCTGTCTCGAAAAACCAGAAAAAAA  534
       ||||||||||||||||||||||||||||||||||
seq2  TCAGAGAAACCCTGTCTCGAAAAACCAGAAAAAAA  535