BAC Information

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BAC

Clone NameB6Ng01-196H12
Chromosome17 (Build37)
Map Location 83,646,015 - 83,804,703
singlet/doubletdoublet
Overlap geneEG545226, Eml4
Upstream geneLOC668836, EG433141, EG625514, LOC100043711, LOC100043900, AW548124
Downstream geneCox7a2l, Kcng3, Mta3, Haao, Zfp36l2, Thada
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-196H12.bB6Ng01-196H12.g
ACCGA018601GA018602
length1,214425
definitionB6Ng01-196H12.b B6Ng01-196H12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,803,509 - 83,804,703)(83,646,015 - 83,646,439)
sequence
gaattcttaaactagtagaaaaaagataaaaggagggtaaatggggagat
ctgcaaatgctttacctgtcagcaatgtgcttcccagtgcaggtgagtaa
cccggctacataaccagtgcatacctggtatagccactggatcactggat
actctgttcattttgcttctattacaatccatcacaggcttgtttcctga
acttgaagaaacatgtcacctttgcagaaatacactgtattctagatatc
ctcaatctggcaacccagcattgtattaaagtgaacatggctatacagtt
tagtacctttagaattttaatactttatataaatcttttgaaaagggaac
actgtaatttcttgttttcccattgatggggtcacaaatataatttatga
tgagaccctccatttagaatagtaactgaaaggaaaagggaccaggatta
tagtgaacataagaagaactacatttactaatttaaaaatctaactacta
cgctgaaagctgtgataaaaaggtgcctctgaaggtatctatatgaatat
acgaacataatacatacccctacctaattcaattctagtatttcctttgg
gagtggtgcagtttcattatatagaacagactggcctcaaactcagagaa
attctgctgtctctgcctctgtcccagtccttcggattaaggtgtgcacc
tccacgcccagcctttgatgttcccttttactgtctctgctactctgtta
cagctagaggtaaccatgcttacctgtatcaataacttccaatctaataa
tctatataaacaagtctttgtattgtctaaataaaaagaaaatagtctct
ggaatgagagcatcttttaaaaactgttgaatatgctttacggactctct
gacgtgtatatgcaactgcaaatgtgttcacaagtacacacacacccaat
gtgaaaggagacaaacttttctaactaaggaaaggacagaggaagaagcc
aacattttactggatggctacgtcagtgagtgaggcgtttgagaaacttt
aagtcaatccgaaatccaattaaaaagattgcagcatttccccacctttt
acctaattgcactgcagcctgcaggagttactattcaccttgcttgtcca
ttctcatgctcagtcctgcgaggcctatgtctgactgcagcaccatcagg
ccattaaaattaac
gaattccgttcccagttactggccacactcacatctcctgtctacagcgc
acccctgacacccatggagtgggaagaagccctgaaaagacgaatccatg
ggattaagcaacaggaagatggcaaaggttgagagcacctaggactccag
ataaggtttcattgatcaaaaaacgggcttgagggcttgggatgcagctc
agctgataaaatacttgcctaatatgcataaagctctgagttcaattcca
gataccacataaaaccaggcatagtagcggatgcttgtgatcctagcact
tgggggagtaggaggatcagaaaattcaaggttgtctccattacagagca
aggtcaaggtcagactgggttatgagagatctccaagaagaaggaggagg
gagggaaggaggaacaagagaaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_83803509_83804703
seq2: B6Ng01-196H12.b_30_1243 (reverse)

seq1  GTTAATTCT-ATGGCCTGAT-GTACTGCACTCTGACATGCCCCTCCCCAG  48
      ||||||| | |||||||||| || ||||| || |||||   ||| | |||
seq2  GTTAATTTTAATGGCCTGATGGTGCTGCAGTCAGACATAGGCCT-CGCAG  49

seq1  GACT--GCATGAG-ATGCAC-AGCA--GTGGATAGGTTACTTCTTGCA-G  91
      ||||  ||||||| ||| || ||||  ||| ||||  ||  || |||| |
seq2  GACTGAGCATGAGAATGGACAAGCAAGGTGAATAG--TAACTCCTGCAGG  97

seq1  CTTCAGTGCATTTAGTGTAAA--GTGGG--AATGCTGCAATCTTTTTTAT  137
      || ||||||| |||| |||||  |||||  ||||||||||||||||| ||
seq2  CTGCAGTGCAATTAG-GTAAAAGGTGGGGAAATGCTGCAATCTTTTTAAT  146

seq1  TGGGTTTCTGATTGACTT-AAGTTTCTC-AATGCCT-AC-CACTGA-GTA  182
      ||| |||| ||||||||| ||||||||| || |||| || |||||| |||
seq2  TGGATTTCGGATTGACTTAAAGTTTCTCAAACGCCTCACTCACTGACGTA  196

seq1  GCCA-CCAGT-AAATGTTGGCTTCTTCCTCTGTCCTTTCC-TAGTTTGAA  229
      |||| ||||| ||||||||||||||||||||||||||||| ||||| |||
seq2  GCCATCCAGTAAAATGTTGGCTTCTTCCTCTGTCCTTTCCTTAGTTAGAA  246

seq1  AAGTTTGTCCTCCTTT-ACATTGTGTGTGTGTGTACTTGTGAACACATTT  278
      |||||||| ||||||| |||||| ||||||||||||||||||||||||||
seq2  AAGTTTGT-CTCCTTTCACATTGGGTGTGTGTGTACTTGTGAACACATTT  295

seq1  GCAGTTTGCATATACACGTCAGTGAGTCCGT-AAGCATATTC-ACAGTTT  326
      |||| ||||||||||||||||| |||||||| |||||||||| |||||||
seq2  GCAG-TTGCATATACACGTCAGAGAGTCCGTAAAGCATATTCAACAGTTT  344

seq1  TTAAAAGATGCTCTCATTCCAGAGACTATTTTCTTTTTATTTAGACAATA  376
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAGATGCTCTCATTCCAGAGACTATTTTCTTTTTATTTAGACAATA  394

seq1  CAAAGACTTGTTTATATAGATTATTAGATTGGAAGTTATTGATACAGGTA  426
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGACTTGTTTATATAGATTATTAGATTGGAAGTTATTGATACAGGTA  444

seq1  AGCATGGTTACCTCTAGCTGTAACAGAGTAGCAGAGACAGTAAAAGGGAA  476
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGGTTACCTCTAGCTGTAACAGAGTAGCAGAGACAGTAAAAGGGAA  494

seq1  CATC-AAGGCTGGGCGTGGAGGTGCACACCTTAATCCGAAGGACTGGGAC  525
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAAAGGCTGGGCGTGGAGGTGCACACCTTAATCCGAAGGACTGGGAC  544

seq1  AGAGGCAGAGACAGCAGAATTTCTCTGAGTTTGAGGCCAGTCTGTTCTAT  575
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCAGAGACAGCAGAATTTCTCTGAGTTTGAGGCCAGTCTGTTCTAT  594

seq1  ATAATGAAACTGCACCACTCCCAAAGGAAATACTAGAATTGAATTAGGTA  625
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGAAACTGCACCACTCCCAAAGGAAATACTAGAATTGAATTAGGTA  644

seq1  GGGGTATGTATTATGTTCGTATATTCATATAGATACCTTCAGAGGCACCT  675
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTATGTATTATGTTCGTATATTCATATAGATACCTTCAGAGGCACCT  694

seq1  TTTTATCACAGCTTTCAGCGTAGTAGTTAGATTTTTAAATTAGTAAATGT  725
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATCACAGCTTTCAGCGTAGTAGTTAGATTTTTAAATTAGTAAATGT  744

seq1  AGTTCTTCTTATGTTCACTATAATCCTGGTCCCTTTTCCTTTCAGTTACT  775
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTTCTTATGTTCACTATAATCCTGGTCCCTTTTCCTTTCAGTTACT  794

seq1  ATTCTAAATGGAGGGTCTCATCATAAATTATATTTGTGACCCCATCAATG  825
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTAAATGGAGGGTCTCATCATAAATTATATTTGTGACCCCATCAATG  844

seq1  GGAAAACAAGAAATTACAGTGTTCCCTTTTCAAAAGATTTATATAAAGTA  875
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAACAAGAAATTACAGTGTTCCCTTTTCAAAAGATTTATATAAAGTA  894

seq1  TTAAAATTCTAAAGGTACTAAACTGTATAGCCATGTTCACTTTAATACAA  925
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATTCTAAAGGTACTAAACTGTATAGCCATGTTCACTTTAATACAA  944

seq1  TGCTGGGTTGCCAGATTGAGGATATCTAGAATACAGTGTATTTCTGCAAA  975
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGGTTGCCAGATTGAGGATATCTAGAATACAGTGTATTTCTGCAAA  994

seq1  GGTGACATGTTTCTTCAAGTTCAGGAAACAAGCCTGTGATGGATTGTAAT  1025
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGACATGTTTCTTCAAGTTCAGGAAACAAGCCTGTGATGGATTGTAAT  1044

seq1  AGAAGCAAAATGAACAGAGTATCCAGTGATCCAGTGGCTATACCAGGTAT  1075
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCAAAATGAACAGAGTATCCAGTGATCCAGTGGCTATACCAGGTAT  1094

seq1  GCACTGGTTATGTAGACGGGTTACTCACCTGCACTGGGAAGCACATTGCT  1125
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GCACTGGTTATGTAGCCGGGTTACTCACCTGCACTGGGAAGCACATTGCT  1144

seq1  GACAGGTAAAGCATTTGCAGATCTCCCCATCTACCCTCCTTTTATCTTTT  1175
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GACAGGTAAAGCATTTGCAGATCTCCCCATTTACCCTCCTTTTATCTTTT  1194

seq1  TTCTACTAGTTTAAGAATTC  1195
      ||||||||||||||||||||
seq2  TTCTACTAGTTTAAGAATTC  1214

seq1: chr17_83646015_83646439
seq2: B6Ng01-196H12.g_65_489

seq1  GAATTCCGTTCCCAGTTACTGGCCACACTCACATCTCCTGTCTACAGCGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCGTTCCCAGTTACTGGCCACACTCACATCTCCTGTCTACAGCGC  50

seq1  ACCCCTGACACACATGGTGTGGGAAGAAGCCCTGAAAAGACGAATCCATG  100
      ||||||||||| ||||| ||||||||||||||||||||||||||||||||
seq2  ACCCCTGACACCCATGGAGTGGGAAGAAGCCCTGAAAAGACGAATCCATG  100

seq1  GGATTAAGCAACAGGAAGATGGCAAAGGTTGAGAGCACCTAGGACTCCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTAAGCAACAGGAAGATGGCAAAGGTTGAGAGCACCTAGGACTCCAG  150

seq1  ATAAGGTTTCATTGATCAAAAAACGGGCTTGAGGGCTTGGGATGCAGCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGTTTCATTGATCAAAAAACGGGCTTGAGGGCTTGGGATGCAGCTC  200

seq1  AGCTGATAAAATACTTGCCTAATATGCATAAAGCTCTGAGTTCAATTCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGATAAAATACTTGCCTAATATGCATAAAGCTCTGAGTTCAATTCCA  250

seq1  GATACCACATAAAACCAGGCATAGTAGCGGATGCTTGTGATCCTAGCACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACCACATAAAACCAGGCATAGTAGCGGATGCTTGTGATCCTAGCACT  300

seq1  TGGGGGAGTAGGAGGATCAGAAAATTCAAGGTTGTCTCCATTACAGAGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGAGTAGGAGGATCAGAAAATTCAAGGTTGTCTCCATTACAGAGCA  350

seq1  AGGTCAAGGTCAGACTGGGTTATGAGAGATCTCCAAGAAGAAGGAGGAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCAAGGTCAGACTGGGTTATGAGAGATCTCCAAGAAGAAGGAGGAGG  400

seq1  GAGGGAAGGAGGAAGAAGAGAAAGA  425
      |||||||||||||| ||||||||||
seq2  GAGGGAAGGAGGAACAAGAGAAAGA  425