BAC Information

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BAC

Clone NameB6Ng01-198N15
Chromosome17 (Build37)
Map Location 26,951,966 - 27,111,127
singlet/doubletdoublet
Overlap geneNkx2-5, Kifc1, Phf1, Cuta, Syngap1, Zbtb9
Upstream geneFbxl16, Wdr24, 2610003J06Rik, Stub1, Rhbdl1, Rhot2, Wdr90, 9530058B02Rik, 0610011F06Rik, Wfikkn1, Rab40c, LOC100043160, Pigq, F430201B04Rik, D630044L22Rik, Solh, 1700022N22Rik, Rab11fip3, Decr2, Nme4, EG666609, Tmem8, Mrpl28, Axin1, Pdia2, Arhgdig, Rgs11, Itfg3, LOC100042643, Luc7l, EG383229, EG240055, C230078M08Rik, Dusp1, EG666668, Ergic1, Atp6v0e, A930001N09Rik, Bnip1
Downstream geneBak1, Ggnbp1, Itpr3, 2900010M23Rik, Ihpk3, Lemd2, LOC100042713, ENSMUSG00000073430, Grm4, LOC677010, Hmga1, AI413582, Nudt3, Rps10, Pacsin1, Spdef, LOC100042744, D17Wsu92e, EG666682, Snrpc, F830021D11Rik, Taf11, Anks1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-198N15.bB6Ng01-198N15.g
ACCGA020339GA020340
length989596
definitionB6Ng01-198N15.b B6Ng01-198N15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,110,154 - 27,111,127)(26,951,966 - 26,952,561)
sequence
gaattctctgtagaagcagaggagcgtactgggttctggaaaggggaaga
gcgaatgcaccagcctcctgaagatgttgtggaaataagtgtgaggctgg
aggctcttccaccggctgaaatcccaccagacgtttctagttctcgaaga
atctctgagcaccgatctaccacttgccacatctgaaggccgctggctac
aaggagatgggcagggagggcatccagcggcaggtggaggcttcctgaat
aaatgagctgaagcagtccctcgaacgcatcggcctcgatgacattcggt
aaagtcagtcggggcgcatcccccaaaagcagcttgtcatggaagtaagg
agaggcagcagccaacactgctttgtgagccctaagttccctgccctgaa
ccaggagggacacatcacagaactttccctccagcctgtggcggttcagg
gattccagcagcgaagagctatgatgagggaactcaatgtggattgtctg
tggggctgggttgcatctcggagatgaggatgcgggaggcaaaggagtcg
aagcatccatggctacctcgggaagagaaataaatcccggggagtcgggc
agtgcagggttctatacggggtgaaggctgcggaggaaagagactggggt
cacacaagttcggggtatgagacctgtctcaagccgctcgccaccgaccc
ttgaaaactcttcggtgacaagcttctgtatattagttccgcccaccagg
aaacccaacaaaacaccagggtttacacctccaggcccagcggaagctaa
ggagggaagggatggcgccccacctcgccgggctcccggtcgccctccgc
caccgctcgcccctccctcaccgtgctcgctccgggccggctcagtggag
cttcgggccccgcgacgtcccaacggacacggtccccaccgcacgcgcga
acgcgtcgggagcaccttcaactgcctagtgcgccctgg
gaattcactatgtagaccaggttggcctcaaattcacagagatcagcctg
cttctgcctcttgagttatgaaactagaggcatgtgctacccgcaggatt
cttacacagcatcaggttcaggacctgccagctgatggcaaagccactga
ttgccagcagactatggatctcttttggaagtgctcctcctgcaccttgc
cttcagcttccccaagaaatcgggttcccatttgtcacaccaagggttct
tgctctagccatggttagcctgggcctcctgcaccaggacttcctcactg
gatgacattcctgaagccccagacaatggagtttcaggtaacaaggaatt
agatcatgtcatagaaaggatggagctggagatgaccatggaaacagcct
atgagggctaaacagctcttatgggccgcctggaattcaagagtgggact
attttgtagccgatggaggtagacagagcacaaggatgagcgtccttaca
gtgcatcctgaggcaccaatgggaaaactatttgcttcattcccaaaatg
ttaggtagcactgagtccaggaggagcagggtgtgggggggtgaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_27110154_27111127
seq2: B6Ng01-198N15.b_46_1030 (reverse)

seq1  GGCGCACT-GGCGGTTG-AGGTGCT-CCGACGCGGTCGCGCGTGCGGTGG  47
      |||||||| ||| |||| ||||||| |||||||| |||||||||||||||
seq2  GGCGCACTAGGCAGTTGAAGGTGCTCCCGACGCGTTCGCGCGTGCGGTGG  50

seq1  GG-GCGTGT-CGGTGGGACGTCGCGGGG-CCGGAGCT-CACTGAGCCGG-  92
      ||  ||||| || ||||||||||||||| ||| |||| ||||||||||| 
seq2  GGACCGTGTCCGTTGGGACGTCGCGGGGCCCGAAGCTCCACTGAGCCGGC  100

seq1  CCGGAGCGAGCACGGTGA-GGAGGGGCGAGCGGTGGCGGAGGGCGACC-G  140
      |||||||||||||||||| ||||||||||||||||||||||||||||| |
seq2  CCGGAGCGAGCACGGTGAGGGAGGGGCGAGCGGTGGCGGAGGGCGACCGG  150

seq1  GAG-CCGGCGAGGTGGGGCGCCATCCCTTCCCTCCTTAGCTTCCGCTGGG  189
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCCGGCGAGGTGGGGCGCCATCCCTTCCCTCCTTAGCTTCCGCTGGG  200

seq1  CCTGGAGGTGTAAACCCTGGTGTTTTGTTGGGTTTCCTGGTGGGCGGAAC  239
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAGGTGTAAACCCTGGTGTTTTGTTGGGTTTCCTGGTGGGCGGAAC  250

seq1  TAATATACAGAAGCTTGTCACCGAAGAGTTTTCAAGGGTCGGTGGCGAGC  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATACAGAAGCTTGTCACCGAAGAGTTTTCAAGGGTCGGTGGCGAGC  300

seq1  GGCTTGAGACAGGTCTCATACCCCGAACTTGTGTGACCCCAGTCTCTTTC  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGAGACAGGTCTCATACCCCGAACTTGTGTGACCCCAGTCTCTTTC  350

seq1  CTCCGCAGCCTTCACCCCGTATAGAACCCTGCACTGCCCGACTCCCCGGG  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCGCAGCCTTCACCCCGTATAGAACCCTGCACTGCCCGACTCCCCGGG  400

seq1  ATTTATTTCTCTTCCCGAGGTAGCCATGGATGCTTCGACTCCTTTGCCTC  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTTCTCTTCCCGAGGTAGCCATGGATGCTTCGACTCCTTTGCCTC  450

seq1  CCGCATCCTCATCTCCGAGATGCAACCCAGCCCCACAGACAATCCACATT  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCATCCTCATCTCCGAGATGCAACCCAGCCCCACAGACAATCCACATT  500

seq1  GAGTTCCCTCATCATAGCTCTTCGCTGCTGGAATCCCTGAACCGCCACAG  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCCCTCATCATAGCTCTTCGCTGCTGGAATCCCTGAACCGCCACAG  550

seq1  GCTGGAGGGAAAGTTCTGTGATGTGTCCCTCCTGGTTCAGGGCAGGGAAC  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAGGGAAAGTTCTGTGATGTGTCCCTCCTGGTTCAGGGCAGGGAAC  600

seq1  TTAGGGCTCACAAAGCAGTGTTGGCTGCTGCCTCTCCTTACTTCCATGAC  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGCTCACAAAGCAGTGTTGGCTGCTGCCTCTCCTTACTTCCATGAC  650

seq1  AAGCTGCTTTTGGGGGATGCGCCCCGACTGACTTTACCGAATGTCATCGA  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGCTTTTGGGGGATGCGCCCCGACTGACTTTACCGAATGTCATCGA  700

seq1  GGCCGATGCGTTCGAGGGACTGCTTCAGCTCATTTATTCAGGAAGCCTCC  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCGATGCGTTCGAGGGACTGCTTCAGCTCATTTATTCAGGAAGCCTCC  750

seq1  ACCTGCCGCTGGATGCCCTCCCTGCCCATCTCCTTGTAGCCAGCGGCCTT  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCCGCTGGATGCCCTCCCTGCCCATCTCCTTGTAGCCAGCGGCCTT  800

seq1  CAGATGTGGCAAGTGGTAGATCGGTGCTCAGAGATTCTTCGAGAACTAGA  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGTGGCAAGTGGTAGATCGGTGCTCAGAGATTCTTCGAGAACTAGA  850

seq1  AACGTCTGGTGGGATTTCAGCCGGTGGAAGAGCCTCCAGCCTCACACTTA  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTCTGGTGGGATTTCAGCCGGTGGAAGAGCCTCCAGCCTCACACTTA  900

seq1  TTTCCACAACATCTTCAGGAGGCTGGTGCATTCGCTCTTCCCCTTTCCAG  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCACAACATCTTCAGGAGGCTGGTGCATTCGCTCTTCCCCTTTCCAG  950

seq1  AACCCAGTACGCTCCTCTGCTTCTACAGAGAATTC  974
      |||||||||||||||||||||||||||||||||||
seq2  AACCCAGTACGCTCCTCTGCTTCTACAGAGAATTC  985

seq1: chr17_26951966_26952561
seq2: B6Ng01-198N15.g_66_661

seq1  GAATTCACTATGTAGACCAGGTTGGCCTCAAATTCACAGAGATCAGCCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTATGTAGACCAGGTTGGCCTCAAATTCACAGAGATCAGCCTG  50

seq1  CTTCTGCCTCTTGAGTTATGAAACTAGAGGCATGTGCTACCCGCAGGATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGCCTCTTGAGTTATGAAACTAGAGGCATGTGCTACCCGCAGGATT  100

seq1  CTTACACAGCATCAGGTTCAGGACCTGCCAGCTGATGGCAAAGCCACTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACACAGCATCAGGTTCAGGACCTGCCAGCTGATGGCAAAGCCACTGA  150

seq1  TTGCCAGCAGACTATGGATCTCTTTTGGAAGTGCTCCTCCTGCACCTTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCAGCAGACTATGGATCTCTTTTGGAAGTGCTCCTCCTGCACCTTGC  200

seq1  CTTCAGCTTCCCCAAGAAATCGGGTTCCCATTTGTCACACCAAGGGTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGCTTCCCCAAGAAATCGGGTTCCCATTTGTCACACCAAGGGTTCT  250

seq1  TGCTCTAGCCATGGTTAGCCTGGGCCTCCTGCACCAGGACTTCCTCACTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTAGCCATGGTTAGCCTGGGCCTCCTGCACCAGGACTTCCTCACTG  300

seq1  GATGACATTCCTGAAGCCCCAGACAATGGAGTTTCAGGTAACAAGGAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGACATTCCTGAAGCCCCAGACAATGGAGTTTCAGGTAACAAGGAATT  350

seq1  AGATCATGTCATAGAAAGGATGGAGCTGGAGATGACCATGGAAACAGCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCATGTCATAGAAAGGATGGAGCTGGAGATGACCATGGAAACAGCCT  400

seq1  ATGAGGGCTAAACAGCTCTTATGGGCCGCCTGGAATTCAAGAGTGGGACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGGCTAAACAGCTCTTATGGGCCGCCTGGAATTCAAGAGTGGGACT  450

seq1  ATTTTGTAGCCGATGGAGGTAGACAGAGCACAAGGATGAGCGTCCTTACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTAGCCGATGGAGGTAGACAGAGCACAAGGATGAGCGTCCTTACA  500

seq1  GTGCATCCTGAGGCACCAATGGGAAAACTATTTGCTTCATTCCCAAAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCATCCTGAGGCACCAATGGGAAAACTATTTGCTTCATTCCCAAAATG  550

seq1  TTAGGTAGCACTGAGTCCAGGAGGAGCAGGGTGTGGGGGGGTGAGA  596
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTAGCACTGAGTCCAGGAGGAGCAGGGTGTGGGGGGGTGAGA  596