BAC Information

Click to search

BAC

Clone NameB6Ng01-199C11
Chromosome17 (Build37)
Map Location 34,700,202 - 34,918,388
singlet/doubletdoublet
Overlap geneNotch4, Gpsm3, Pbx2, Ager, Rnf5, Agpat1, Egfl8, Ppt2, Prrt1, Fkbpl, Crebl1, Tnxb, EG632302, C4b, Stk19-ps1, Skiv2l-ps1, LOC100043024
Upstream geneMyo1f, Zfp414, Pram1, Hnrpm, March2, Rab11b, Angptl4, Ankrd47, Rps28, Ndufa7, Cd320, LOC100042967, LOC630219, LOC100042970, BC051226, Daxx, Zbtb22, Tapbp, Rgl2, H2-Ke2, Wdr46, B3galt4, Rps18, Vps52, EG630499, LOC100042989, AA388235, H2-K1, LOC654352, Ring1, H2-Ke6, Slc39a7, Rxrb, Col11a2, LOC672505, H2-Pa, H2-Oa, Brd2, LOC100043003, LOC100043522, H2-DMa, H2-DMb2, H2-DMb1, Psmb9, Tap1, Psmb8, Tap2, H2-Ob, H2-Ab1, H2-Aa, H2-Eb1, H2-Eb2, H2-Ea, Btnl2, LOC100038862, LOC667442, BC051142, EG632126, Btnl5, LOC624681, Btnl7
Downstream geneCyp21a2-ps, Cyp21a1, C4a, Stk19, Dom3z, Skiv2l, Rdbp, Cfb, C2, Zbtb12, Ehmt2, Slc44a4, Neu1, 1110038B12Rik, LOC667548, Hspa1b, Hspa1a, Hspa1l, Lsm2, Vars, D17H6S56E-3, Ng23, Msh5, Clic1, Ddah2, AU023871, G6b, Ly6g6c, Ly6g6d, Ly6g6e, Bat5, Ly6g5c, Ly6g5b, Csnk2b, Bat4, D17H6S53E, Apom, LOC100043621, Bat3, Bat2, Aif1, EG667612, Lst1, Ltb, Tnf, Lta, Nfkbil1, Atp6v1g2, Bat1a, H2-D1, H2-Q1, EG667636, LOC100043066, H2-Q2, EG625285, LOC436493, H2-Q8, EG667662, H2-Q6, H2-Q7, EG667669, H2-Q10, Pou5f1, Tcf19, Cchcr1, Psors1c2, Cdsn, LOC674169, 2300002M23Rik, LOC672682, Dpcr1, EG433102, Vars2, Gtf2h4, Ddr1, LOC100043663
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-199C11.bB6Ng01-199C11.g
ACCGA020563GA020564
length1,0521,116
definitionB6Ng01-199C11.b B6Ng01-199C11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,700,202 - 34,701,218)(34,917,283 - 34,918,388)
sequence
gaattccctttatggttgtctttttttatagatgacttaaattttatgtc
ttgactaacatcttgactgtaccccagcatcctttgtggaggagagaggt
agaggtggatgaaatagagtgtccctttgttattggtaatgacaatattt
tacattcctctctgaaggaaggccaagcctccagactcgtggtaaagtat
cagtgtagaacacgggaagcctgggttccgtctccactcggaggagggcc
cagcgtcctgtccactccccaggaaaaagccaggcatggagtcatgtgcc
tgtaacctcagcacccaggtggcagctgcagaaggatcccacaggttcca
ggccagccaggacgattcgcacagccaggatgttgcgcacagtgagatct
tgtctcaaaatacctttttaaaaaactaacaccccgggctggtgagatgg
ctcagtgggtaagagcacccgactgctcttccgaaggtcaagccaccaca
tggtggctcacaaccatccgtaacaagatctgattctctcttctggagtg
tctgaggacagctacagtgtacttacatataataaataaataaataaata
aataaatctttaaaaaaaaaaaaaaaaacttaacacccccagaaagagcc
aaggaaaggtctaaaagatcccctgggtttgccaaagtgaccggttttca
gtttcaagacacgtttgctgctcctttgaaaagagggtgtgtcacactag
aaactgaaaatccttctcccttgtcccaacaccctcttgtctaagacctg
ccctttccttgggtcacagtagcatttcctttgccacttcccagtccctg
tgaaaaaggtaagcccgtattggacccatttaaaattgacatgaattccc
cctatttgggctgaccccccaccctggggccctaatagcaaaccagcttc
ttcttcccgggcaggccacgcccctctcctaatcctctcctggccttcct
ttcaaaacacacaccaacctcttcgctcctccccacccccccatcaagta
gg
gaattcctagagagattgatttctggatagagattcctgcatgcatgttg
aaaggttcctgctttgagaagaaagctgtgttgtcattcctttctgctgg
tcggaaacggaggcgacacttcagtctcactggttctctgtgagcaagct
ggttttgggtgacccttctaggtcctttcttgtccctagtcttccctatc
acaagctcatgtttggtgtgactataataaacccattgctcaggaacttg
gcagtctcccaggctcaaggctcattagatgcagtctgcacctggatcca
tcacctgtaactttgctgatacacaggatgggtgtacagttaagtaaaac
tgtatcctagcacctccttcactgtttccatggagacagagcctctgtga
ggactcctgggtcacatattcccagggagtgctaacatctctgttgtctg
aagctgggctattcaaggctcagctgtgcactggcctcacagtcaggatc
atctgtccctcagatgctactcattaaatgactggtctctaaggtgacag
ggcagaagcagggtcccttaagaggtgtggcctggtagacattccccagg
ttgcttaggatgtgccattgaaaaggacggggagactgagcttcctcttt
atctccagtctgcttttgaggtgtttgctaatccatgacaggttctgaac
gagcaaggcagcccatcaaaacctgggtgaaagcaaaacttctctcagtt
gattatgtccagtactatcactagaatgaggctgacagagtagcttgata
ggaatgcagattagactctaggtggactggttacatctgacctgctctgt
ggtgtgacccaggcacaggaagtgcttgctaaggacaaatgcttccaggt
agctggtgacaaggtgacagctttcttagtccaggctggatgtacccatg
atggacagagcggggtttcaaggccaccaatggacccatacaggtacatt
tcttgaacttgtgactgggctccagtttcccaccagttcttctggtcttt
caagtttgtacctcttgaggccacccatttccctagccttgtagagtcca
agtggccgttcctgga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_34700202_34701218
seq2: B6Ng01-199C11.b_29_1080

seq1  GAATTCCCTTTATGGTTGTCTTTTTTTATAGATGACTTAAATTTTATGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTTTATGGTTGTCTTTTTTTATAGATGACTTAAATTTTATGTC  50

seq1  TTGACTAACATCTTGACTGTACCCCAGCATCCTTTGTGGAGGAGAGAGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTAACATCTTGACTGTACCCCAGCATCCTTTGTGGAGGAGAGAGGT  100

seq1  AGAGGTGGATGAAATAGAGTGTCCCTTTGTTATTGGTAATGACAATATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTGGATGAAATAGAGTGTCCCTTTGTTATTGGTAATGACAATATTT  150

seq1  TACATTCCTCTCTGAAGGAAGGCCAAGCCTCCAGACTCGTGGTAAAGTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTCCTCTCTGAAGGAAGGCCAAGCCTCCAGACTCGTGGTAAAGTAT  200

seq1  CAGTGTAGAACACGGGAAGCCTGGGTTCCGTCTCCACTCGGAGGAGGGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTAGAACACGGGAAGCCTGGGTTCCGTCTCCACTCGGAGGAGGGCC  250

seq1  CAGCGTCCTGTCCACTCCCCAGGAAAAAGCCAGGCATGGAGTCATGTGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCGTCCTGTCCACTCCCCAGGAAAAAGCCAGGCATGGAGTCATGTGCC  300

seq1  TGTAACCTCAGCACCCAGGTGGCAGCTGCAGAAGGATCCCACAGGTTCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACCTCAGCACCCAGGTGGCAGCTGCAGAAGGATCCCACAGGTTCCA  350

seq1  GGCCAGCCAGGACGATTCGCACAGCCAGGATGTTGCGCACAGTGAGATCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGCCAGGACGATTCGCACAGCCAGGATGTTGCGCACAGTGAGATCT  400

seq1  TGTCTCAAAATACCTTTTTAAAAAACTAACACCCCGGGCTGGTGAGATGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCAAAATACCTTTTTAAAAAACTAACACCCCGGGCTGGTGAGATGG  450

seq1  CTCAGTGGGTAAGAGCACCCGACTGCTCTTCCGAAGGTCAAGCCACCACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTGGGTAAGAGCACCCGACTGCTCTTCCGAAGGTCAAGCCACCACA  500

seq1  TGGTGGCTCACAACCATCCGTAACAAGATCTGATTCTCTCTTCTGGAGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGCTCACAACCATCCGTAACAAGATCTGATTCTCTCTTCTGGAGTG  550

seq1  TCTGAGGACAGCTACAGTGTACTTACATATAATAAATAAATAAATAAATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGGACAGCTACAGTGTACTTACATATAATAAATAAATAAATAAATA  600

seq1  AATAAATCTTTAAAAAAAAAAAAAAAAAC-TAACACCCCCAGAAAGAGCC  649
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AATAAATCTTTAAAAAAAAAAAAAAAAACTTAACACCCCCAGAAAGAGCC  650

seq1  AAGGAAAGGTCT-AAAGATCCCCTGGGTTTGCCAAAGTGACCGG-TTTCA  697
      |||||||||||| ||||||||||||||||||||||||||||||| |||||
seq2  AAGGAAAGGTCTAAAAGATCCCCTGGGTTTGCCAAAGTGACCGGTTTTCA  700

seq1  G-TTCAAGACACG-TTGCTGCTCCTTTGAAAAGAGGGTGTGTCACACCAG  745
      | ||||||||||| ||||||||||||||||||||||||||||||||| ||
seq2  GTTTCAAGACACGTTTGCTGCTCCTTTGAAAAGAGGGTGTGTCACACTAG  750

seq1  AAACTGAGAATCCT--CCCCTTGTCCCAACA-CCTC-TGTCTAAGACCTG  791
      ||||||| ||||||   |||||||||||||| |||| |||||||||||||
seq2  AAACTGAAAATCCTTCTCCCTTGTCCCAACACCCTCTTGTCTAAGACCTG  800

seq1  CCCTT--CCTGGGTCACAGTAGCA-TTCCCTTGCCAC-TCCCAGT-CCTG  836
      |||||  | ||||||||||||||| |||| ||||||| ||||||| ||||
seq2  CCCTTTCCTTGGGTCACAGTAGCATTTCCTTTGCCACTTCCCAGTCCCTG  850

seq1  TGAAAA--GGAAG-CCGTATTG--ACCATT--AAAATGACAGGAACTCCC  879
      ||||||  | ||| ||||||||   |||||  ||| ||||| ||| ||||
seq2  TGAAAAAGGTAAGCCCGTATTGGACCCATTTAAAATTGACATGAATTCCC  900

seq1  CC-ATTT-GGCTGACCCCCCACCCT-GGGCCCTAAGAGCAAACCAGCTCC  926
      || |||| ||||||||||||||||| ||||||||| |||||||||||| |
seq2  CCTATTTGGGCTGACCCCCCACCCTGGGGCCCTAATAGCAAACCAGCTTC  950

seq1  --CCTCCCGGCCA-GCCACGCCCCTCTCTTACT-CTC-CCTTGTCTTCCT  971
        | |||||| || |||||||||||||| || | ||| ||| | ||||||
seq2  TTCTTCCCGGGCAGGCCACGCCCCTCTCCTAATCCTCTCCTGGCCTTCCT  1000

seq1  T--CACACACACACCAACCTC-TCGCTCC-CCCCA-CCCCCCATC-AGTA  1015
      |   | ||||||||||||||| ||||||| ||||| ||||||||| ||||
seq2  TTCAAAACACACACCAACCTCTTCGCTCCTCCCCACCCCCCCATCAAGTA  1050

seq1  GG  1017
      ||
seq2  GG  1052

seq1: chr17_34917283_34918388
seq2: B6Ng01-199C11.g_61_1176 (reverse)

seq1  TCCAGG-ACGGCCACTTTGACTCTACAAAGGCTAGGG--ATGGGTGGCCT  47
      |||||| |||||||||| |||||||| ||||||||||  |||||||||||
seq2  TCCAGGAACGGCCACTTGGACTCTAC-AAGGCTAGGGAAATGGGTGGCCT  49

seq1  C-AGAGGTACAACCTGG--AGGCCAGGAGGACTGTGGGGAAACTGGAGCC  94
      | |||||||||| || |  || |||| || ||||  ||||||||||||||
seq2  CAAGAGGTACAAACTTGAAAGACCAGAAGAACTGGTGGGAAACTGGAGCC  99

seq1  CAGTCACAAGTTCA--GAATGTACCTGTATGGGTCCATTTGGTGCCTTG-  141
      ||||||||||||||   |||||||||||||||||||||| |  |||||| 
seq2  CAGTCACAAGTTCAAGAAATGTACCTGTATGGGTCCATTGGTGGCCTTGA  149

seq1  AACCCCGCTCTGTCCATCATGGGTACATCCAGCCTGGACTAAG-AAGCTG  190
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AACCCCGCTCTGTCCATCATGGGTACATCCAGCCTGGACTAAGAAAGCTG  199

seq1  TCACCTTGTCACCAGCTACCTGGAAGCATTTGTCCTTAGCAAGCACTTCC  240
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTTGTCACCAGCTACCTGGAAGCATTTGTCCTTAGCAAGCACTTCC  249

seq1  TTGTGCCTGGGTCACACCACAGAGCAGGTCAGATGTAACCAGTCCACCTA  290
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TGTGCCTGGGTCACACCACAGAGCAGGTCAGATGTAACCAGTCCACCTA  298

seq1  GAGTCT-ATCTGCATTCCTATCAAGCTACTCTGTCAGCCTCATTCTAGTG  339
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTAATCTGCATTCCTATCAAGCTACTCTGTCAGCCTCATTCTAGTG  348

seq1  ATAGTACTGGACATAATCAACTGAGAGAAGTTTTGCTTTCACCCAGGTTT  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTACTGGACATAATCAACTGAGAGAAGTTTTGCTTTCACCCAGGTTT  398

seq1  TGATGGGCTGCCTTGCTCGTTCAGAACCTGTCATGGATTAGCAAACACCT  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGGCTGCCTTGCTCGTTCAGAACCTGTCATGGATTAGCAAACACCT  448

seq1  C-AAAGCAGACTGGAGATAAAGAGGAAGCTCAGTCTCCCCGTCCTTTTCA  488
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGCAGACTGGAGATAAAGAGGAAGCTCAGTCTCCCCGTCCTTTTCA  498

seq1  ATGGCACATCCTAAGCAACCTGGGGAATGTCTACCAGGCCACACCTCTTA  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCACATCCTAAGCAACCTGGGGAATGTCTACCAGGCCACACCTCTTA  548

seq1  AGGGACCCTGCTTCTGCCCTGTCACCTTAGAGACCAGTCATTTAATGAGT  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACCCTGCTTCTGCCCTGTCACCTTAGAGACCAGTCATTTAATGAGT  598

seq1  AGCATCTGAGGGACAGATGATCCTGACTGTGAGGCCAGTGCACAGCTGAG  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCTGAGGGACAGATGATCCTGACTGTGAGGCCAGTGCACAGCTGAG  648

seq1  CCTTGAATAGCCCAGCTTCAGACAACAGAGATGTTAGCACTCCCTGGGAA  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGAATAGCCCAGCTTCAGACAACAGAGATGTTAGCACTCCCTGGGAA  698

seq1  TATGTGACCCAGGAGTCCTCACAGAGGCTCTGTCTCCATGGAAACAGTGA  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGACCCAGGAGTCCTCACAGAGGCTCTGTCTCCATGGAAACAGTGA  748

seq1  AGGAGGTGCTAGGATACAGTTTTACTTAACTGTACACCCATCCTGTGTAT  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGTGCTAGGATACAGTTTTACTTAACTGTACACCCATCCTGTGTAT  798

seq1  CAGCAAAGTTACAGGTGATGGATCCAGGTGCAGACTGCATCTAATGAGCC  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAAGTTACAGGTGATGGATCCAGGTGCAGACTGCATCTAATGAGCC  848

seq1  TTGAGCCTGGGAGACTGCCAAGTTCCTGAGCAATGGGTTTATTATAGTCA  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGCCTGGGAGACTGCCAAGTTCCTGAGCAATGGGTTTATTATAGTCA  898

seq1  CACCAAACATGAGCTTGTGATAGGGAAGACTAGGGACAAGAAAGGACCTA  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAAACATGAGCTTGTGATAGGGAAGACTAGGGACAAGAAAGGACCTA  948

seq1  GAAGGGTCACCCAAAACCAGCTTGCTCACAGAGAACCAGTGAGACTGAAG  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGTCACCCAAAACCAGCTTGCTCACAGAGAACCAGTGAGACTGAAG  998

seq1  TGTCGCCTCCGTTTCCGACCAGCAGAAAGGAATGACAACACAGCTTTCTT  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCGCCTCCGTTTCCGACCAGCAGAAAGGAATGACAACACAGCTTTCTT  1048

seq1  CTCAAAGCAGGAACCTTTCAACATGCATGCAGGAATCTCTATCCAGAAAT  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAGCAGGAACCTTTCAACATGCATGCAGGAATCTCTATCCAGAAAT  1098

seq1  CAATCTCTCTAGGAATTC  1106
      ||||||||||||||||||
seq2  CAATCTCTCTAGGAATTC  1116