BAC Information

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BAC

Clone NameB6Ng01-202N11
Chromosome17 (Build37)
Map Location 90,446,798 - 90,627,500
singlet/doubletdoublet
Overlap geneNrxn1
Upstream geneFshr, LOC100043904, LOC100043906
Downstream geneEG668871, LOC668872
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-202N11.bB6Ng01-202N11.g
ACCGA023223GA023224
length1,1561,116
definitionB6Ng01-202N11.b B6Ng01-202N11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,446,798 - 90,447,956)(90,626,384 - 90,627,500)
sequence
gaattcactcagtagctcaaactgccctcgaagtaatgatcctttgcctc
accctcctgagtcctgggattaaaagcactggatgtttcagaacacagca
tatggtcttgcaagatgggtcagtggataatggacttggcatacataaac
tataaactttctttccgtgtaccaggaaagaaagtactaagtacacaaag
ttgtcctttgacctctgtatgtgtgctgcgtgcaaacgtccacacacaca
ttacacacacacaggcacacacattcaataataagaaagcttgttaggaa
agtatacttttccctctatacatctgtaacttccacttcctatagtacct
aacatgagactgaacagttggaagacgtaggatcaatagtcattcacaca
aacaccacactgcttcatctaaacttcctaatacactgtttaatttttgt
gtctgagatcactcagttattcagttagtcaagttagcaagctcatttaa
ccattttgggttcttcatttatggccacagcatgtgacatgtagaggttt
gtgaataaatagttgatagcatgctgtgagtcaagtttatcaaggcagct
gagcaattgtggaagttttcagacttctcagaccctggagctaggaattt
atgaagaacatgatcatagtagaaatagggcaccatgattcactgtgtat
gcgagcacatgtgcttggatacgtggatattgtaacttctcccagctccc
tgacagaaggcgaaagctaacattttgttttacatgatttgtataagtaa
aggcagaaactttgaaaaaaataaaccccaaaaaactccatagcctcttt
cctgaaacctcagatgcactttacataaatatgcagtaatatcaaaagac
tcttatcttccaccccaatagcatccatccatggtgaatattcctaatac
taagtaatcattagcagatgctcgatgcagctccaatcattattgattta
ctgaaaaactgaagttattttcctatttttattagcaacaatttttggcc
ttttctagtaatgctaagtaagctcttctgctgtgttctctctgtacatt
gttatcagatttatttccacatgcagagctctgcagcctatgccattaag
aaagaa

gaattctgtgaatgagtcatagattattatttattacttattaattggag
ctcaaataaagctaacattaaataacctttccacttcagttaacttgaaa
gcttgtctttcgcttcagaatagacctttagggttattcattttggtgct
gtgatttttaggatttcttgatttgaattattatatctgtgcagcatctt
ggattaaatcaggtcaaatttaaaaacatattaaatattagtcccatgct
tccaagctatggggtaaagaagatgatggtaattgagagactgatttcaa
atcatgattaaggaattcaaataatttaaatttaaaaatagaaaaatttg
agatactctggcaagagaataattaaaagcatctgcaaaatagtctcatt
ttatatgagaaaaattgacgagaaagtgaaaaacagaaagcctgactaac
actgaggttcctagaactgacagaaagagtttagaaggcagagtgtcagc
atgtcctccccatgtgatacaccggtaactcaaacactcgaagctcacct
attaaattagccttgttattgtattctgagaagcaactcacaaagactta
gtgtagattcatcattcattatttaaagggagcatcttacggcttatttg
ataccaaactcagatctgtattcacttgattagtaattatggggttagaa
gacctggactggtaggaagttattagtattcttttcaaatatcaggttta
ttgcctataggagtagatgaataaatctcttgttcctactcctattataa
acatacattttatttagtcaaaactgtatgactgattttattataattta
tttgattggatggtttggaaaactaaattcttttgaagtaatacatgttt
ctaaagatgatttaaagtgtcactgtaaattaaacaaacaacaaaaacca
acaaacaaagaccctagagagcactcagggatttgggctgagttatgggg
aaaggtgcctggtggggtgaccctgtgaccctcctccccttctattaggt
tccggcctccttgtgaatgtttccagaattccactacatgaaggaacatt
ccatgcttcccatgtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_90446798_90447956
seq2: B6Ng01-202N11.b_49_1204

seq1  GAATTCACTCAGTAGCTCAAACTGCCCTCGAAGTAATGATCCTTTGCCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCAGTAGCTCAAACTGCCCTCGAAGTAATGATCCTTTGCCTC  50

seq1  ACCCTCCTGAGTCCTGGGATTAAAAGCACTGGATGTTTCAGAACACAGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTCCTGAGTCCTGGGATTAAAAGCACTGGATGTTTCAGAACACAGCA  100

seq1  TATGGTCTTGCAAGATGGGTCAGTGGATAATGGACTTGGCATACATAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTCTTGCAAGATGGGTCAGTGGATAATGGACTTGGCATACATAAAC  150

seq1  TATAAACTTTCTTTCCGTGTACCAGGAAAGAAAGTACTAAGTACACAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAACTTTCTTTCCGTGTACCAGGAAAGAAAGTACTAAGTACACAAAG  200

seq1  TTGTCCTTTGACCTCTGTATGTGTGCTGCGTGCAAACGTCCACACACACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCTTTGACCTCTGTATGTGTGCTGCGTGCAAACGTCCACACACACA  250

seq1  TTACACACACACAGGCACACACATTCAATAATAAGAAAGCTTGTTAGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACACACACAGGCACACACATTCAATAATAAGAAAGCTTGTTAGGAA  300

seq1  AGTATACTTTTCCCTCTATACATCTGTAACTTCCACTTCCTATAGTACCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATACTTTTCCCTCTATACATCTGTAACTTCCACTTCCTATAGTACCT  350

seq1  AACATGAGACTGAACAGTTGGAAGACGTAGGATCAATAGTCATTCACACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGAGACTGAACAGTTGGAAGACGTAGGATCAATAGTCATTCACACA  400

seq1  AACACCACACTGCTTCATCTAAACTTCCTAATACACTGTTTAATTTTTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACCACACTGCTTCATCTAAACTTCCTAATACACTGTTTAATTTTTGT  450

seq1  GTCTGAGATCACTCAGTTATTCAGTTAGTCAAGTTAGCAAGCTCATTTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGAGATCACTCAGTTATTCAGTTAGTCAAGTTAGCAAGCTCATTTAA  500

seq1  CCATTTTGGGTTCTTCATTTATGGCCACAGCATGTGACATGTAGAGGTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTTGGGTTCTTCATTTATGGCCACAGCATGTGACATGTAGAGGTTT  550

seq1  GTGAATAAATAGTTGATAGCATGCTGTGAGTCAAGTTTATCAAGGCAGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATAAATAGTTGATAGCATGCTGTGAGTCAAGTTTATCAAGGCAGCT  600

seq1  GAGCAATTGTGGAAGTTTTCAGACTTCTCAGACCCTGGAGCTAGGAATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAATTGTGGAAGTTTTCAGACTTCTCAGACCCTGGAGCTAGGAATTT  650

seq1  ATGAAGAACATGATCATAGTAGAAATAGGGCACCATGATTCACTGTGTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGAACATGATCATAGTAGAAATAGGGCACCATGATTCACTGTGTAT  700

seq1  GCGAGCACATGTGCTTGGATACGTGGATATTGTAACTTCTCCCAGCTCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAGCACATGTGCTTGGATACGTGGATATTGTAACTTCTCCCAGCTCCC  750

seq1  TGACAGAAGGCGAAAGCTAACATTTTGTTTTACATGATTTGTATAAGTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGAAGGCGAAAGCTAACATTTTGTTTTACATGATTTGTATAAGTAA  800

seq1  AGGCAGAAACTTTGAAAAAAATAAACCCCAAAAAACTCCATAGCCTCTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGAAACTTTGAAAAAAATAAACCCCAAAAAACTCCATAGCCTCTTT  850

seq1  CCTGAAACCTCAGATGCACTTTACATAAATATGCAGTAATATCAAAAGAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAACCTCAGATGCACTTTACATAAATATGCAGTAATATCAAAAGAC  900

seq1  TCTTATCTTCCACCCCAATAGCATCCATCCATGGTGAATATTCCTAATAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATCTTCCACCCCAATAGCATCCATCCATGGTGAATATTCCTAATAC  950

seq1  TAAGTAATCATTAGCAGATGCTCGATGCAGCTCCAATCATTATTGATTTA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTAATCATTAGCAGATGCTCGATGCAGCTCCAATCATTATTGATTTA  1000

seq1  CTGAAAAACCTGAAGTTATTTTCCTATTTTATTAAGCAAACAATTTTT-G  1049
      |||||||| |||||||||||||||||||||  | ||| |||||||||| |
seq2  CTGAAAAA-CTGAAGTTATTTTCCTATTTTTATTAGC-AACAATTTTTGG  1048

seq1  CCTTTCCTAGTTAATGCTAAGTAGGCTC-TCTGCTGTGT--TCTCTGTAC  1096
      ||||| |||| |||||||||||| |||| ||||||||||  |||||||||
seq2  CCTTTTCTAG-TAATGCTAAGTAAGCTCTTCTGCTGTGTTCTCTCTGTAC  1097

seq1  A-TGTTATCAGATTTATTTCCCACATGCCAGAGCTCTGCAG-CTATGGGC  1144
      | ||||||||||||||||| ||||||| ||||||||||||| |||| | |
seq2  ATTGTTATCAGATTTATTT-CCACATG-CAGAGCTCTGCAGCCTAT-GCC  1144

seq1  ATTAAAGGAAAAGAA  1159
      |||||    ||||||
seq2  ATTAA---GAAAGAA  1156


seq1: chr17_90626384_90627500
seq2: B6Ng01-202N11.g_66_1181 (reverse)

seq1  GACAT-GAAAGCATG--ATG-TCCTTCATGTTTAGT-GAATTCT-GAAAC  44
      ||||| | |||||||  ||| |||||||||  |||| ||||||| |||||
seq2  GACATGGGAAGCATGGAATGTTCCTTCATG--TAGTGGAATTCTGGAAAC  48

seq1  A-TCACAA-GAGGCCGAAACCTTATAGAA-GGGAG--AGGTCACAGGGTC  89
      | |||||| ||||||| ||||| |||||| |||||   ||||||||||||
seq2  ATTCACAAGGAGGCCGGAACCTAATAGAAGGGGAGGAGGGTCACAGGGTC  98

seq1  ACCC--ACAAGCACCTTTCCCCATTACTCAGGCCAAATCCCTGAGTGCTC  137
      ||||   || |||||||||||||| |||||| ||||||||||||||||||
seq2  ACCCCACCAGGCACCTTTCCCCATAACTCAGCCCAAATCCCTGAGTGCTC  148

seq1  TCTAGTGTCTTTTTGTTTTGTTTTGTTTTTTTGTTTTGTTTTGTTTTATT  187
      ||||| ||||||         ||||||  ||| | ||||||   |||| |
seq2  TCTAGGGTCTTT--------GTTTGTTGGTTTTTGTTGTTT--GTTTAAT  188

seq1  TTACAGTGACACTTTTAAAATCATCTTTAGAAACATGTATTACTTCAAAA  237
      |||||||||||||||  |||||||||||||||||||||||||||||||||
seq2  TTACAGTGACACTTT--AAATCATCTTTAGAAACATGTATTACTTCAAAA  236

seq1  GAATTTAGTTTTCCAAACCATCCAATCAAATAAATTATAATAAAATCAGT  287
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTAGTTTTCCAAACCATCCAATCAAATAAATTATAATAAAATCAGT  286

seq1  CATACAGTTTTGACTAAATAAAATGTATGTTTATAATAGGAGTAGGAACA  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACAGTTTTGACTAAATAAAATGTATGTTTATAATAGGAGTAGGAACA  336

seq1  AGAGATTTATTCATCTACTCCTATAGGCAATAAACCTGATATTTGAAAAG  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATTTATTCATCTACTCCTATAGGCAATAAACCTGATATTTGAAAAG  386

seq1  AATACTAATAACTTCCTACCAGTCCAGGTCTTCTAACCCCATAATTACTA  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTAATAACTTCCTACCAGTCCAGGTCTTCTAACCCCATAATTACTA  436

seq1  ATCAAGTGAATACAGATCTGAGTTTGGTATCAAATAAGCCGTAAGATGCT  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGTGAATACAGATCTGAGTTTGGTATCAAATAAGCCGTAAGATGCT  486

seq1  CCCTTTAAATAATGAATGATGAATCTACACTAAGTCTTTGTGAGTTGCTT  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTAAATAATGAATGATGAATCTACACTAAGTCTTTGTGAGTTGCTT  536

seq1  CTCAGAATACAATAACAAGGCTAATTTAATAGGTGAGCTTCGAGTGTTTG  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAATACAATAACAAGGCTAATTTAATAGGTGAGCTTCGAGTGTTTG  586

seq1  AGTTACCGGTGTATCACATGGGGAGGACATGCTGACACTCTGCCTTCTAA  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACCGGTGTATCACATGGGGAGGACATGCTGACACTCTGCCTTCTAA  636

seq1  ACTCTTTCTGTCAGTTCTAGGAACCTCAGTGTTAGTCAGGCTTTCTGTTT  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTTCTGTCAGTTCTAGGAACCTCAGTGTTAGTCAGGCTTTCTGTTT  686

seq1  TTCACTTTCTCGTCAATTTTTCTCATATAAAATGAGACTATTTTGCAGAT  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTTTCTCGTCAATTTTTCTCATATAAAATGAGACTATTTTGCAGAT  736

seq1  GCTTTTAATTATTCTCTTGCCAGAGTATCTCAAATTTTTCTATTTTTAAA  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTAATTATTCTCTTGCCAGAGTATCTCAAATTTTTCTATTTTTAAA  786

seq1  TTTAAATTATTTGAATTCCTTAATCATGATTTGAAATCAGTCTCTCAATT  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATTATTTGAATTCCTTAATCATGATTTGAAATCAGTCTCTCAATT  836

seq1  ACCATCATCTTCTTTACCCCATAGCTTGGAAGCATGGGACTAATATTTAA  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCATCTTCTTTACCCCATAGCTTGGAAGCATGGGACTAATATTTAA  886

seq1  TATGTTTTTAAATTTGACCTGATTTAATCCAAGATGCTGCACAGATATAA  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTTTTAAATTTGACCTGATTTAATCCAAGATGCTGCACAGATATAA  936

seq1  TAATTCAAATCAAGAAATCCTAAAAATCACAGCACCAAAATGAATAACCC  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCAAATCAAGAAATCCTAAAAATCACAGCACCAAAATGAATAACCC  986

seq1  TAAAGGTCTATTCTGAAGCGAAAGACAAGCTTTCAAGTTAACTGAAGTGG  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGTCTATTCTGAAGCGAAAGACAAGCTTTCAAGTTAACTGAAGTGG  1036

seq1  AAAGGTTATTTAATGTTAGCTTTATTTGAGCTCCAATTAATAAGTAATAA  1087
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTTATTTAATGTTAGCTTTATTTGAGCTCCAATTAATAAGTAATAA  1086

seq1  ATAATAATCTATGACTCATTCACAGAATTC  1117
      ||||||||||||||||||||||||||||||
seq2  ATAATAATCTATGACTCATTCACAGAATTC  1116


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