BAC Information

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BAC

Clone NameB6Ng01-203C14
Chromosome17 (Build37)
Map Location 45,555,169 - 45,706,751
singlet/doubletdoublet
Overlap geneCdc5l, Spats1, EG668319, Aars2, Tcte1, Gm323, Nfkbie, Slc35b2, Hsp90ab1
Upstream geneRunx2, Supt3h, 4930564C03Rik, EG210562, EG668314
Downstream geneSlc29a1, EG653016, Capn11, Tmem63b, Mrpl14, LOC100043363, Vegfa, Mrps18a, 1700027N10Rik, Mad2l1bp, Gtpbp2, Polh, Xpo5, Rpo1-1, Yipf3, Gm88, Tjap1, Egfl9, Abcc10, BC040756, Zfp318, LOC677168, Crip3, Slc22a7, EG328825, Ttbk1, BC048355, Parc, Srf, Ptk7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-203C14.bB6Ng01-203C14.g
ACCGA023453GA023454
length1,107813
definitionB6Ng01-203C14.b B6Ng01-203C14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,555,169 - 45,556,259)(45,705,946 - 45,706,751)
sequence
gaattcctggagcccacacaacagcatgggtgctccacgccaatgataaa
cttcatctcagcagagtggggctgggatcacagctctgacagagcgcttg
tctagtatggggtgggagcgagggaggatacgcggtgaacagatcctaaa
gagcagcatgcagagttggtctctcctcccaaatatacacgcgtgcgtgc
gcacacgcacacacaccaacacaaacacacacacacagacacaccaacac
acacagacacacacaccaacacaagcacacacacacacacacacacacag
agggaacacatacaagcaaatgagaataagctagactagattttgataaa
attttaagatattagcataagatccaacttgttacaaatgtacaaaaata
taaagatgtcattggctaaaaaaataaataagctgggcagtggtagggca
cgcctttgatcccagcacttgggaggcagaggcctcagaggatttctgag
ttctaggccagcctggtctacagagtgagttccaggacagccaggactac
acagagaaaccctgtctcgaaaataaatgtatgtatgtatgtatgtatgt
atgtatggcatagtggtgtttaatccaacactaggaaagcagaggcaggt
agatctctgtaagtttgagaacagcctggtcgacatagtgagttccagga
cagctagggctacataatgagatactgtttccaaaaaagaaaaaaaaaga
aaaaaaaaaaaaggaatatataaacaagcaaataaaaaatatgtcattac
taatagtaactgggctggagagatggctcagtgattaaggcactgtgtgg
ctactcttccagaggaccctaagttttgattttcccagtacccatatagt
agctcccaaaccacctgttatttctagtttccagggaattcaatgtcctt
cttttcttccctccataagcaccaggcacacattgaggtacacacagaca
aaacgctggtacaggcttcaaaaaaaaagaaagattgttcatcagtgagt
aaacagcctactgaaacataagcactatttagaaacaacacatcagtcag
tgactcc
gaattcagggcattgctcttcattccccggcgggctcccttcgacctttt
tgagaacaagaagaagaagaacaacatcaaattgtatgtccgccgtgtgt
tcatcatggacagctgtgacgagctgatacctgagtacctcaactttatc
cgcggtgtggttgactccgaggacctgcccctgaacatctcccgggagat
gctgcagcagagcaagatcctgaaggtcatccgcaagaacatcgtcaaga
agtgcctggagctcttctccgagctggctgaggacaaggagaactacaag
aagttctatgaggccttctccaaaaatttaaaggtaagacggacaagtgt
tctccaaataactttgtatttagggtgttttttccagctcatataattgg
atttttcttttaaagcttggaattcatgaagattccactaaccgacgccg
cctctctgagctccttcgctatcacacctctcagtctggagatgagatga
cctccttgtcagagtatgtgtctcgcatgaaggagacccagaagtccatc
tactatatcactggtatgtcggagattgggtctgagtaaagctgtcttgt
ggacttgggaaagggggaagtggtggtgtggaggccatgtggtggccatg
tggccattgttgtattaatcctgtaggtgagagcaaagagcaagtggcca
actctgccttttgtggagcgagtgcggaagcggggcttcgaggtggtgta
tttgacttgagccttatttgacgaagtactgcgtgcagccagctcaagga
gttttgatgggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_45555169_45556259
seq2: B6Ng01-203C14.b_46_1152

seq1  GAATTCCTGGAGCCCACACAACAGCATGGGTGCTCCACGCCAATGATAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGGAGCCCACACAACAGCATGGGTGCTCCACGCCAATGATAAA  50

seq1  CTTCATCTCAGCAGAGTGGGGCTGGGATCACAGCTCTGACAGAGCGCTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATCTCAGCAGAGTGGGGCTGGGATCACAGCTCTGACAGAGCGCTTG  100

seq1  TCTAGTATGGGGTGGGAGCGAGGGAGGATACGCGGTGAACAGATCCTAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGTATGGGGTGGGAGCGAGGGAGGATACGCGGTGAACAGATCCTAAA  150

seq1  GAGCAGCATGCAGAGTTGGTCTCTCCTCCCAAATATACACGCGTGCGTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGCATGCAGAGTTGGTCTCTCCTCCCAAATATACACGCGTGCGTGC  200

seq1  GCACACGCACACACACCAACACAAACACACACACACAGACACACCAACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACGCACACACACCAACACAAACACACACACACAGACACACCAACAC  250

seq1  ACACAGACACACACACCAACACAAGCACACACACACACACACACACACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGACACACACACCAACACAAGCACACACACACACACACACACACAG  300

seq1  AGGGAACACATACAAGCAAATGAGAATAAGCTAGACTAGATTTTGATAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAACACATACAAGCAAATGAGAATAAGCTAGACTAGATTTTGATAAA  350

seq1  ATTTTAAGATATTAGCATAAGATCCAACTTGTTACAAATGTACAAAAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAGATATTAGCATAAGATCCAACTTGTTACAAATGTACAAAAATA  400

seq1  TAAAGATGTCATTGGCTAAAAAAATAAATAAGCTGGGCAGTGGTAGGGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGATGTCATTGGCTAAAAAAATAAATAAGCTGGGCAGTGGTAGGGCA  450

seq1  CGCCTTTGATCCCAGCACTTGGGAGGCAGAGGCCTCAGAGGATTTCTGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCTTTGATCCCAGCACTTGGGAGGCAGAGGCCTCAGAGGATTTCTGAG  500

seq1  TTCTAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGACTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGACTAC  550

seq1  ACAGAGAAACCCTGTCTCGAAAATAAATGTATGTATGTATGTATGTATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGAAACCCTGTCTCGAAAATAAATGTATGTATGTATGTATGTATGT  600

seq1  ATGTATGGCATAGTGGTGTTTAATCCAACACTAGGAAAGCAGAGGCAGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATGGCATAGTGGTGTTTAATCCAACACTAGGAAAGCAGAGGCAGGT  650

seq1  AGATCTCTGTAAGTTTGAGAACAGCCTGGTCGACATAGTGAGTTCCAGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTCTGTAAGTTTGAGAACAGCCTGGTCGACATAGTGAGTTCCAGGA  700

seq1  CAGCTAGGGCTACATAATGAGATACTGTTTCCAAAAAAGAAAAAAAAAG-  749
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CAGCTAGGGCTACATAATGAGATACTGTTTCCAAAAAAGAAAAAAAAAGA  750

seq1  AAAAAAAAAAAAGGAATATATAAACAAGCAAATAAAAAATATGTCATTAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAGGAATATATAAACAAGCAAATAAAAAATATGTCATTAC  800

seq1  TAATAGTAACTGGGCTGGAGAGATGGCTCAGTGATT-AGGCACTGTGTGG  848
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TAATAGTAACTGGGCTGGAGAGATGGCTCAGTGATTAAGGCACTGTGTGG  850

seq1  CTACTCTTCCAGAGGACCCTA--GTTTGATTT--CCAGTACCCATATAGT  894
      |||||||||||||||||||||   ||||||||  ||||||||||||||||
seq2  CTACTCTTCCAGAGGACCCTAAGTTTTGATTTTCCCAGTACCCATATAGT  900

seq1  AGCTCCC-AACCACCTG-TAATTCTAG-TTCCAGGGAATTCAATGTCCT-  940
      ||||||| ||||||||| || |||||| ||||||||||||||||||||| 
seq2  AGCTCCCAAACCACCTGTTATTTCTAGTTTCCAGGGAATTCAATGTCCTT  950

seq1  -CTTTCTTCCCTCCATAAGCACCAGGCACACA-TGAGGTACACACAGACA  988
        |||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CTTTTCTTCCCTCCATAAGCACCAGGCACACATTGAGGTACACACAGACA  1000

seq1  AAACGCTGGTACAGGCT---CAAAAAAAGAAAGAT--GTCATCAGTGAGT  1033
      |||||||||||||||||    ||||||||||||||   ||||||||||||
seq2  AAACGCTGGTACAGGCTTCAAAAAAAAAGAAAGATTGTTCATCAGTGAGT  1050

seq1  AAACAGCCTACTGAAACATAAGCACTAATTAAGAAAC-ACACATCAGGTC  1082
      |||||||||||||||||||||||||| ||| |||||| |||||||| |||
seq2  AAACAGCCTACTGAAACATAAGCACT-ATTTAGAAACAACACATCA-GTC  1098

seq1  AGTGACTCC  1091
      |||||||||
seq2  AGTGACTCC  1107

seq1: chr17_45705946_45706751
seq2: B6Ng01-203C14.g_66_878 (reverse)

seq1  TTCCCATC-AAACTCCTTGAGCT-GCTGCACGCAGTAC-TCGTCAA--TA  45
      |||||||| |||||||||||||| |||||||||||||| |||||||   |
seq2  TTCCCATCAAAACTCCTTGAGCTGGCTGCACGCAGTACTTCGTCAAATAA  50

seq1  GGCTC-AGTCATATACACCACCTCGAAGCCCCGCTTCCGCACTCGCTCCA  94
      ||||| ||||| ||||||||||||||||||||||||||||||||||||||
seq2  GGCTCAAGTCAAATACACCACCTCGAAGCCCCGCTTCCGCACTCGCTCCA  100

seq1  C-AAAGGCAGAGTTGGCCACTTGCTCTTTGCTCTCACCTACAGGATTAAT  143
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGGCAGAGTTGGCCACTTGCTCTTTGCTCTCACCTACAGGATTAAT  150

seq1  ACAACAATGGCCACATGGCCACCACATGGCCTCCACACCACCACTTCCCC  193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAATGGCCACATGGCCACCACATGGCCTCCACACCACCACTTCCCC  200

seq1  CTTTCCCAAGTCCACAAGACAGCTTTACTCAGACCCAATCTCCGACATAC  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCCAAGTCCACAAGACAGCTTTACTCAGACCCAATCTCCGACATAC  250

seq1  CAGTGATATAGTAGATGGACTTCTGGGTCTCCTTCATGCGAGACACATAC  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGATATAGTAGATGGACTTCTGGGTCTCCTTCATGCGAGACACATAC  300

seq1  TCTGACAAGGAGGTCATCTCATCTCCAGACTGAGAGGTGTGATAGCGAAG  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACAAGGAGGTCATCTCATCTCCAGACTGAGAGGTGTGATAGCGAAG  350

seq1  GAGCTCAGAGAGGCGGCGTCGGTTAGTGGAATCTTCATGAATTCCAAGCT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCAGAGAGGCGGCGTCGGTTAGTGGAATCTTCATGAATTCCAAGCT  400

seq1  TTAAAAGAAAAATCCAATTATATGAGCTGGAAAAAACACCCTAAATACAA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAGAAAAATCCAATTATATGAGCTGGAAAAAACACCCTAAATACAA  450

seq1  AGTTATTTGGAGAACACTTGTCCGTCTTACCTTTAAATTTTTGGAGAAGG  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATTTGGAGAACACTTGTCCGTCTTACCTTTAAATTTTTGGAGAAGG  500

seq1  CCTCATAGAACTTCTTGTAGTTCTCCTTGTCCTCAGCCAGCTCGGAGAAG  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATAGAACTTCTTGTAGTTCTCCTTGTCCTCAGCCAGCTCGGAGAAG  550

seq1  AGCTCCAGGCACTTCTTGACGATGTTCTTGCGGATGACCTTCAGGATCTT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCAGGCACTTCTTGACGATGTTCTTGCGGATGACCTTCAGGATCTT  600

seq1  GCTCTGCTGCAGCATCTCCCGGGAGATGTTCAGGGGCAGGTCCTCGGAGT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGCTGCAGCATCTCCCGGGAGATGTTCAGGGGCAGGTCCTCGGAGT  650

seq1  CAACCACACCGCGGATAAAGTTGAGGTACTCAGGTATCAGCTCGTCACAG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCACACCGCGGATAAAGTTGAGGTACTCAGGTATCAGCTCGTCACAG  700

seq1  CTGTCCATGATGAACACACGGCGGACATACAATTTGATGTTGTTCTTCTT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCATGATGAACACACGGCGGACATACAATTTGATGTTGTTCTTCTT  750

seq1  CTTCTTGTTCTCAAAAAGGTCGAAGGGAGCCCGCCGGGGAATGAAGAGCA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTGTTCTCAAAAAGGTCGAAGGGAGCCCGCCGGGGAATGAAGAGCA  800

seq1  ATGCCCTGAATTC  806
      |||||||||||||
seq2  ATGCCCTGAATTC  813