BAC Information

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BAC

Clone NameB6Ng01-203N21
Chromosome17 (Build37)
Map Location 77,599,289 - 77,774,246
singlet/doubletdoublet
Overlap geneLOC545234
Upstream geneLOC100043886, EG624348
Downstream geneLOC100043887, LOC668795, LOC383275, Crim1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-203N21.bB6Ng01-203N21.g
ACCGA023967GA023968
length6381,072
definitionB6Ng01-203N21.b B6Ng01-203N21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,599,289 - 77,599,926)(77,773,178 - 77,774,246)
sequence
gaattcttccataaacttgtttctctttttcattcagtatcctaaccaaa
gtggataaaaggagacatataattcataggaaaagggacttccaagaaga
gctaaaagaatagaaaatgcacaattgcttaaaggtagctgtgtagttcc
tgagatgataaaaacctatggaattaaaacttcagctttcaatacattct
acttcaatgaagagacctggtttttattaagtagagcatttggcttcaac
cccatattttatgagctaaggaaactcactggggaactttagaaaacatg
tgtcactttgctttgtacaggaatagatgctggcaagaaaagaacacaga
aattactgagatccaaatactgggaatgcttgcccaaggtgtcttaatag
ttaatttccctttcctttattgttataggctttattccaaagggcacagc
aagatctttcagaacatagttcagctcagcattcacagagcacctgctga
caagtttataacatcaaatcttagactttgagactccatgaataattact
agcagtgtaaagttttattttccttcactttaagccagggtgtatgtgtg
tgcttatgtatgtgtgtgtgtacatgagtgtgtgtgtg
gaattcattttcagatctacaacatgaatctgaaacaatttaaatttaag
ttcaaactaaaattctttttaacataggttagatggtttcaatttcttac
ttgatcatctacaataattttattgtttcttcattctttttcttttgttt
tttttcttttttctttctttcttttttttttttttttttttttttgcttt
gtaattggccttatcttcataaaatgtgttatcactttaagtaagaaata
aagacattgattgttaaactacttaatgctatgcctaagggaccacagga
tgtttcctgcaggccaaagagcattacttacagtggctgtcatccacacc
tgctgagttcatcttcttgttatctgcatgaagaaagtttgatagaatta
cagtataacttgtaagagtaaaaaagcttgtttcttgtttagtttctgat
atattttgtctcctttaattctctaaaatataggagcataatggagtctg
tagaaaaagtgagcagttcacatattctagatattacggaggggatatat
aaagactctacaatgacatgcaatacatatatatacatgtgtgtgtgtgt
gtgtgtgtatgcaatgtggtatcaactgttgtttatatttcatttttttc
ttgtactaaaagcaaaaactaatggtcacccaatgtaggatattttgcaa
ctaagaacatatttattcactcatttatctaatcaacatttcttgtatac
ctgtaatcacacacagttcctaccatgtaaactttcacacaggctagggg
aactaatagcattaaaacccagttttcctttcaaagataagaaaatagtg
catagggagttaaatgggaaatcgaattttaagaaataaaaagcactgat
ttccagtcaccctgttttcatccttgcccaggccaccacaaaatttattc
caatttcttcttccagggaaagcatgcatctaccctagaagcctctttga
atactagcctcttctgggtctgtgggttgtagtgtggttattcttgactt
taaaactaatatattccaattg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_77599289_77599926
seq2: B6Ng01-203N21.b_45_682

seq1  GAATTCTTCCATAAACTTGTTTCTCTTTTTCATTCAGTATCCTAACCAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCATAAACTTGTTTCTCTTTTTCATTCAGTATCCTAACCAAA  50

seq1  GTGGATAAAAGGAGACATATAATTCATAGGAAAAGGGACTTCCAAGAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATAAAAGGAGACATATAATTCATAGGAAAAGGGACTTCCAAGAAGA  100

seq1  GCTAAAAGAATAGAAAATGCACAATTGCTTAAAGGTAGCTGTGTAGTTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAAAGAATAGAAAATGCACAATTGCTTAAAGGTAGCTGTGTAGTTCC  150

seq1  TGAGATGATAAAAACCTATGGAATTAAAACTTCAGCTTTCAATACATTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATGATAAAAACCTATGGAATTAAAACTTCAGCTTTCAATACATTCT  200

seq1  ACTTCAATGAAGAGACCTGGTTTTTATTAAGTAGAGCATTTGGCTTCAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAATGAAGAGACCTGGTTTTTATTAAGTAGAGCATTTGGCTTCAAC  250

seq1  CCCATATTTTATGAGCTAAGGAAACTCACTGGGGAACTTTAGAAAACATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATATTTTATGAGCTAAGGAAACTCACTGGGGAACTTTAGAAAACATG  300

seq1  TGTCACTTTGCTTTGTACAGGAATAGATGCTGGCAAGAAAAGAACACAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACTTTGCTTTGTACAGGAATAGATGCTGGCAAGAAAAGAACACAGA  350

seq1  AATTACTGAGATCCAAATACTGGGAATGCTTGCCCAAGGTGTCTTAATAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACTGAGATCCAAATACTGGGAATGCTTGCCCAAGGTGTCTTAATAG  400

seq1  TTAATTTCCCTTTCCTTTATTGTTATAGGCTTTATTCCAAAGGGCACAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTCCCTTTCCTTTATTGTTATAGGCTTTATTCCAAAGGGCACAGC  450

seq1  AAGATCTTTCAGAACATAGTTCAGCTCAGCATTCACAGAGCACCTGCTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCTTTCAGAACATAGTTCAGCTCAGCATTCACAGAGCACCTGCTGA  500

seq1  CAAGTTTATAACATCAAATCTTAGACTTTGAGACTCCATGAATAATTACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTTATAACATCAAATCTTAGACTTTGAGACTCCATGAATAATTACT  550

seq1  AGCAGTGTAAAGTTTTATTTTCCTTCACTTTAAGCCAGGGTGTATGTGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTGTAAAGTTTTATTTTCCTTCACTTTAAGCCAGGGTGTATGTGTG  600

seq1  TGCTTATGTATGTGTGTGTGTACATGAGTGTGTGTGTG  638
      ||||||||||||||||||||||||||||||||||||||
seq2  TGCTTATGTATGTGTGTGTGTACATGAGTGTGTGTGTG  638

seq1: chr17_77773178_77774246
seq2: B6Ng01-203N21.g_65_1136 (reverse)

seq1  CAATTGGATATTAATTTAGTTTTTAAGTCAAG-ATAACCACACTACAAAC  49
      |||||||  | ||  |||||||| |||||||| ||||||||||||||| |
seq2  CAATTGG--AATATATTAGTTTTAAAGTCAAGAATAACCACACTACAACC  48

seq1  CACAGACCCAG-AGAGGCTAAGTA-TCAAAGAGGGCTCTAGGGTAGATGC  97
      ||||||||||| ||||||| |||| |||||||||  ||||||||||||||
seq2  CACAGACCCAGAAGAGGCT-AGTATTCAAAGAGGCTTCTAGGGTAGATGC  97

seq1  ATGGCTTTCCCTGGGAAGAAGAAA-TGGAATAAATTTTGTGGTTGGCCTG  146
      || ||||||||| ||||||||||| ||||||||||||||||| |||||||
seq2  AT-GCTTTCCCT-GGAAGAAGAAATTGGAATAAATTTTGTGG-TGGCCTG  144

seq1  GGCAAGGATGAAAACAGGGTGACTGG-AATCAGTGCTTTTTATTTCTTAA  195
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GGCAAGGATGAAAACAGGGTGACTGGAAATCAGTGCTTTTTATTTCTTAA  194

seq1  AATTCGATTT-CCATTT-ACTCCCTATGCACTA-TTTCTTATCTTTGAAA  242
      |||||||||| |||||| ||||||||||||||| ||||||||||||||||
seq2  AATTCGATTTCCCATTTAACTCCCTATGCACTATTTTCTTATCTTTGAAA  244

seq1  GG-AAACTGGGTTTTAATGCTATTAGTTCCCCTAGCCTGTGTGAAAGTTT  291
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAACTGGGTTTTAATGCTATTAGTTCCCCTAGCCTGTGTGAAAGTTT  294

seq1  ACATGGTAGGAACTGTGTGTGATTACAGGTATACAAGAAATGTTGATTAG  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGTAGGAACTGTGTGTGATTACAGGTATACAAGAAATGTTGATTAG  344

seq1  ATAAATGAGTGAATAAATATGTTCTTAGTTGCAAAATATCCTACATTGGG  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATGAGTGAATAAATATGTTCTTAGTTGCAAAATATCCTACATTGGG  394

seq1  TGACCATTAGTTTTTGCTTTTAGTACAAGAAAAAAATGAAATATAAACAA  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCATTAGTTTTTGCTTTTAGTACAAGAAAAAAATGAAATATAAACAA  444

seq1  CAGTTGATACCACATTGCATACACACACACACACACACACATGTATATAT  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGATACCACATTGCATACACACACACACACACACACATGTATATAT  494

seq1  ATGTATTGCATGTCATTGTAGAGTCTTTATATATCCCCTCCGTAATATCT  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATTGCATGTCATTGTAGAGTCTTTATATATCCCCTCCGTAATATCT  544

seq1  AGAATATGTGAACTGCTCACTTTTTCTACAGACTCCATTATGCTCCTATA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATATGTGAACTGCTCACTTTTTCTACAGACTCCATTATGCTCCTATA  594

seq1  TTTTAGAGAATTAAAGGAGACAAAATATATCAGAAACTAAACAAGAAACA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGAGAATTAAAGGAGACAAAATATATCAGAAACTAAACAAGAAACA  644

seq1  AGCTTTTTTACTCTTACAAGTTATACTGTAATTCTATCAAACTTTCTTCA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTTTTACTCTTACAAGTTATACTGTAATTCTATCAAACTTTCTTCA  694

seq1  TGCAGATAACAAGAAGATGAACTCAGCAGGTGTGGATGACAGCCACTGTA  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGATAACAAGAAGATGAACTCAGCAGGTGTGGATGACAGCCACTGTA  744

seq1  AGTAATGCTCTTTGGCCTGCAGGAAACATCCTGTGGTCCCTTAGGCATAG  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATGCTCTTTGGCCTGCAGGAAACATCCTGTGGTCCCTTAGGCATAG  794

seq1  CATTAAGTAGTTTAACAATCAATGTCTTTATCTCTTACTTAAAGTGATAA  841
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CATTAAGTAGTTTAACAATCAATGTCTTTATTTCTTACTTAAAGTGATAA  844

seq1  CACATTTTATGAAGATAAGGCCAATTACAAAGCAAAAAAAAAAAAAAAAA  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTTTATGAAGATAAGGCCAATTACAAAGCAAAAAAAAAAAAAAAAA  894

seq1  AAAAAAAGAAAGAAAGAAAAAAGAAAAAAAACAAAAGAAAAAGAATGAAG  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAGAAAGAAAGAAAAAAGAAAAAAAACAAAAGAAAAAGAATGAAG  944

seq1  AAACAATAAAATTATTGTAGATGATCAAGTAAGAAATTGAAACCATCTAA  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAATAAAATTATTGTAGATGATCAAGTAAGAAATTGAAACCATCTAA  994

seq1  CCTATGTTAAAAAGAATTTTAGTTTGAACTTAAATTTAAATTGTTTCAGA  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATGTTAAAAAGAATTTTAGTTTGAACTTAAATTTAAATTGTTTCAGA  1044

seq1  TTCATGTTGTAGATCTGAAAATGAATTC  1069
      ||||||||||||||||||||||||||||
seq2  TTCATGTTGTAGATCTGAAAATGAATTC  1072