BAC Information

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BAC

Clone NameB6Ng01-205A11
Chromosome17 (Build37)
Map Location 25,252,801 - 25,390,077
singlet/doubletdoublet
Overlap gene1110018H23Rik, Clcn7, Gm317, BC003965, Unkl, Gnptg, 0610007P22Rik
Upstream genePdpk1, Amdhd2, Atp6v0c, Tbc1d24, Ntn2l, 1600002H07Rik, Ccnf, Abca17, Abca3, Rnps1, Dci, Dnase1l2, E4f1, 1700012G19Rik, Gbl, 9930021D14Rik, LOC666299, Caskin1, Traf7, Rab26, Pkd1, Tsc2, Nthl1, Slc9a3r2, Npw, Zfp598, Syngr3, Gfer, Noxo1, Tbl3, Rnf151, Rps2, Snora64, Ndufb10, Rpl3l, Sepx1, Hs3st6, 4930528F23Rik, Fahd1, Hagh, Igfals, Nubp2, Spsb3, Mrps34, Nme3, Mapk8ip3, Hn1l, Cramp1l, Ift140, BC054438, Telo2
Downstream geneUbe2i, Prss34, Prss28, Prss29, LOC432543, LOC666472, Tpsab1, Mcpt6, Tpsg1, Cacna1h, Tekt4, Sstr5, LOC100042580, Sox8, Tmem112, LOC545396, Gng13, Chtf18, Rpusd1, BC052484, Msln, Narfl, Haghl, Ccdc78, BC008155, Metrn, Fbxl16, Wdr24, 2610003J06Rik, Stub1, Rhbdl1, Rhot2, Wdr90, 9530058B02Rik, 0610011F06Rik, Wfikkn1, Rab40c, LOC100043160, Pigq, F430201B04Rik, D630044L22Rik, Solh, 1700022N22Rik, Rab11fip3, Decr2, Nme4, EG666609, Tmem8, Mrpl28, Axin1, Pdia2, Arhgdig, Rgs11, Itfg3, LOC100042643, Luc7l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-205A11.bB6Ng01-205A11.g
ACCGA024817GA024818
length1,0921,084
definitionB6Ng01-205A11.b B6Ng01-205A11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,252,801 - 25,253,906)(25,389,013 - 25,390,077)
sequence
tcgcagagctcacgtgaaacctgcacggatatttagaatttctggggctg
atacaaacgcgtggctagggacgaatcagcggcgcgccaacgcgctgatg
accgcagcatctgcgcctgcgcaagaggaggaagaggcgtggcctaagag
cctacggtgggcaaggcctgagggcaggactccggtaggcgtgtccgctc
tattggtcccctggtgactgctgtctctgttttccttaattctggagaga
ctttccccagcacattaccccactatgctgccttgggtcggatgactttc
cactctagagcactaatcaactctctaggcgccctgagggaaacagaata
aggaagccaggaacagcggatatggccaagttgtaatgcggatgcgctga
tgtatttggtggtacacaagggtgcacgtttactgcgaacacgcaaactg
cgtctaaactgccctaaatgaaacaccactagctgagtaaacacccaggg
atcctgactgtcgtctgaacttagcagtgtgaaacattccatcatggcag
aacttttcttgaccatcctgatctggaagatacattgagggagcaacatt
tcagcggaactgggtgtgggtggaaatctgagcaagctgtattcattcat
gatcatcaagcaaaattacccttcctgagcaggaaatgagcccactcaag
gcttagcagttagcagagcataccaggggccagagcgattatcttagagg
ttaaattacgtgtggctcttgccaaggtcccaagttcagttcccagcatc
catggaagtgttaccgatcagccagccaggatctctacacaaataaaaac
tggggttagtcaaagagacagtcttcaaatggtagcttcttttttttttt
tttctccatgtttggcctcagtgagagatggcagatgactcccctagtat
aggggactggagcattgggacccttagccctaaaagtatcctagctctta
cgtaggtcaagaatccctagctcttcctgtggctggtgcagcttcaacta
gcagattgggatgaaggaccttcagccctacgcttccaattt
gaattctcaggtgatcctaggcctgctgctccaaatggaggggtgtcctt
ctggtattcagtcttagaactgccactgtggtcccttggagtgccagcta
cctaccagggttatagacagataagttcagaccatacctttccatcggca
aacctcaactttaggatagaatggctgagtgggggccacagggtcagcct
gggcttagacgccatttgcagttgcaagaccactctcctagagatgaaaa
ccaggctgctctggcaggctgcagcagaatggcttggttgccacagcaac
aggcaggcagctgatttgatgtgctaggtgacaaggagcttaggatacag
ctgagcacttccagccatccccagatgagacacacggaggatttcattct
cttttcctttctactgactgcagggtacaaaatctactctggggggtact
ggccccttgtgttttattggatgtatgtaaggaccccagagtagctcatg
ggcatcttgggctcagtgacagctgccaaccctaccctgggcttatgggt
gtaagggccaagccatagacaagtgctctaccttgctttttggcctcctg
cagagaaggcctgggtgaggagacatgaaacagctacattctgtcatact
ttttagggtgatcggggcacaatacaggtaccagccttggatgtgggagc
agaacatatctgtctctactgagatcccagaagtactttgacacagagac
caattctggcacttctccttccacccctgagggtgtctgccactgtctcc
caaagccatttctacagggggcacaaaaggctatttagggtcactttatc
cagtgtggcagcagaagttcgcaaagcccccccttcagggacctagcaga
attgcaaggatggtagcaggcccctgagcccttggattctaccctcctgc
tagcctggtgctgtgaatagaacagtggatcaactattgtactcgctaca
ggtggctgccatgtcaaccttgctggacaatcaagagcagcgtgctcaag
gcaagtgcagtgttgtgcctcgtcccttccgccg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_25252801_25253906
seq2: B6Ng01-205A11.b_54_1145

seq1  TCGCAGAGCTCACGTGAAACCTGCACGGATATTTAGAATTTCTGGGGCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCAGAGCTCACGTGAAACCTGCACGGATATTTAGAATTTCTGGGGCTG  50

seq1  ATACAAACGCGTGGCTAGGGACGAATCAGCGGCGCGCCAACGCGCTGATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAACGCGTGGCTAGGGACGAATCAGCGGCGCGCCAACGCGCTGATG  100

seq1  ACCGCAGCATCTGCGCCTGCGCAAGAGGAGGAAGAGGCGTGGCCTAAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGCAGCATCTGCGCCTGCGCAAGAGGAGGAAGAGGCGTGGCCTAAGAG  150

seq1  CCTACGGTGGGCAAGGCCTGAGGGCAGGACTCCGGTAGGCGTGTCCGCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACGGTGGGCAAGGCCTGAGGGCAGGACTCCGGTAGGCGTGTCCGCTC  200

seq1  TATTGGTCCCCTGGTGACTGCTGTCTCTGTTTTCCTTAATTCTGGAGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGTCCCCTGGTGACTGCTGTCTCTGTTTTCCTTAATTCTGGAGAGA  250

seq1  CTTTCCCCAGCACATTACCCCACTATGCTGCCTTGGGTCGGATGACTTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCCCAGCACATTACCCCACTATGCTGCCTTGGGTCGGATGACTTTC  300

seq1  CACTCTAGAGCACTAATCAACTCTCTAGGCGCCCTGAGGGAAACAGAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTAGAGCACTAATCAACTCTCTAGGCGCCCTGAGGGAAACAGAATA  350

seq1  AGGAAGCCAGGAACAGCGGATATGGCCAAGTTGTAATGCGGATGCGCTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGCCAGGAACAGCGGATATGGCCAAGTTGTAATGCGGATGCGCTGA  400

seq1  TGTATTTGGTGGTACACAAGGGTGCACGTTTACTGCGAACACGCAAACTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTTGGTGGTACACAAGGGTGCACGTTTACTGCGAACACGCAAACTG  450

seq1  CGTCTAAACTGCCCTAAATGAAACACCACTAGCTGAGTAAACACCCAGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCTAAACTGCCCTAAATGAAACACCACTAGCTGAGTAAACACCCAGGG  500

seq1  ATCCTGACTGTCGTCTGAACTTAGCAGTGTGAAACATTCCATCATGGCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGACTGTCGTCTGAACTTAGCAGTGTGAAACATTCCATCATGGCAG  550

seq1  AACTTTTCTTGACCATCCTGATCTGGAAGATACATTGAGGGAGCAACATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTTCTTGACCATCCTGATCTGGAAGATACATTGAGGGAGCAACATT  600

seq1  TCAGCGGAACTGGGTGTGGGTGGAAATCTGAGCAAGCTGTATTCATTCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TCAGCGGAACTGGGTGTGGGTGGAAATCTGAGCAAGCTGTATTCATTCAT  650

seq1  CATCATCAAGCAAAATTACCCTTCCTGAGCAGGAAATGAGCCCACTCAAG  700
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCATCAAGCAAAATTACCCTTCCTGAGCAGGAAATGAGCCCACTCAAG  700

seq1  GCTTAGCAGTTAGCAGAGCATACCAGGGGCCAGAGCGATTATCTTAGAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAGCAGTTAGCAGAGCATACCAGGGGCCAGAGCGATTATCTTAGAGG  750

seq1  TTAAATTACGTGTGGCTCTTGCCAAGGTCCCAAGTTCAGTTCCCAGCATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTACGTGTGGCTCTTGCCAAGGTCCCAAGTTCAGTTCCCAGCATC  800

seq1  CATGGAAGTGTTACCGATCAGCCAGCCAGGATCTCTACACAAATAAAAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGAAGTGTTACCGATCAGCCAGCCAGGATCTCTACACAAATAAAAAC  850

seq1  TGGGGTTAGTCAAAGAGAAGGTCTTCAAATGGTAGCTTTCTTTTTTTTTT  900
      ||||||||||||||||||  |||||||||||||||||   | ||||||||
seq2  TGGGGTTAGTCAAAGAGACAGTCTTCAAATGGTAGCT---TCTTTTTTTT  897

seq1  TTTTTTCTCCATGTTTGGCCTCAGTGAGAGATGGCAGATGACTCCCCTAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCTCCATGTTTGGCCTCAGTGAGAGATGGCAGATGACTCCCCTAG  947

seq1  TATTAGGGGACTGGAGGCATTGGGACCCTTAGCCCTAAAAGTATTCTAGC  1000
      || |||||||||||| |||||||||||||||||||||||||||| |||||
seq2  TA-TAGGGGACTGGA-GCATTGGGACCCTTAGCCCTAAAAGTATCCTAGC  995

seq1  TCTTACGTAGGTCAGGAATCCTTGGCTCTTTCCTGTGGCTGGTGCAGCTT  1050
      |||||||||||||| |||||| | |||| |||||||||||||||||||||
seq2  TCTTACGTAGGTCAAGAATCCCTAGCTC-TTCCTGTGGCTGGTGCAGCTT  1044

seq1  CCACTAAGCAGATTTGGTGATTGTAGGGACTCTTCAGCCCTACAGCTTTA  1100
      | ||| ||||||||  | |||   | |||| |||||||||||| || || 
seq2  CAACT-AGCAGATT--GGGAT--GAAGGAC-CTTCAGCCCTAC-GC-TTC  1086

seq1  CAATTT  1106
      ||||||
seq2  CAATTT  1092

seq1: chr17_25389013_25390077
seq2: B6Ng01-205A11.g_68_1151 (reverse)

seq1  CGGCGGAA-GGACG-GGCACA--CCTGCACCTGCC-TGAGCACGCTGCTC  45
      |||||||| ||||| ||||||   |||||| |||| ||||||||||||||
seq2  CGGCGGAAGGGACGAGGCACAACACTGCACTTGCCTTGAGCACGCTGCTC  50

seq1  TTGA-TGTCCAGCAAGGTTGACATGGCAGCCACCTGTAGCGAGTACATTA  94
      |||| |||||||||||||||||||||||||||||||||||||||||| ||
seq2  TTGATTGTCCAGCAAGGTTGACATGGCAGCCACCTGTAGCGAGTACAATA  100

seq1  GTTGATCAACTGTTCTA-TCACAGCA-CAGGCTAGCA-GAGGGTAG-ATC  140
      ||||||| ||||||||| |||||||| |||||||||| |||||||| |||
seq2  GTTGATCCACTGTTCTATTCACAGCACCAGGCTAGCAGGAGGGTAGAATC  150

seq1  --AAGGCTCAGGGGCCTGCTACCATCC-TGC-ATTCTGCTAGGTCCCTGA  186
        | ||||||||||||||||||||||| ||| ||||||||||||||||||
seq2  CAAGGGCTCAGGGGCCTGCTACCATCCTTGCAATTCTGCTAGGTCCCTGA  200

seq1  AGGGGGGGCTTTGCGAAC-TCTGCTGCCACACTGGAT-AAGTGACC--TA  232
      |||||||||||||||||| |||||||||||||||||| ||||||||   |
seq2  AGGGGGGGCTTTGCGAACTTCTGCTGCCACACTGGATAAAGTGACCCTAA  250

seq1  ATAGCCTTTTGTGCCCCCTGTAG-AATGGCTTTGGGAGACAGTGGCAGAC  281
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  ATAGCCTTTTGTGCCCCCTGTAGAAATGGCTTTGGGAGACAGTGGCAGAC  300

seq1  ACCCTCAGGGGTGGAAGGAGAAGTGCCAGAATTGGTCTCTGTGTCAAAGT  331
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTCAGGGGTGGAAGGAGAAGTGCCAGAATTGGTCTCTGTGTCAAAGT  350

seq1  ACTTCTGGGATCTCAGTAGAGACAGATATGTTCTGCTCCCACATCCAAGG  381
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTGGGATCTCAGTAGAGACAGATATGTTCTGCTCCCACATCCAAGG  400

seq1  CTGGTACCTGTATTGTGCCCCGATCACCCTAAAAAGTATGACAGAATGTA  431
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTACCTGTATTGTGCCCCGATCACCCTAAAAAGTATGACAGAATGTA  450

seq1  GCTGTTTCATGTCTCCTCACCCAGGCCTTCTCTGCAGGAGGCCAAAAAGC  481
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTTCATGTCTCCTCACCCAGGCCTTCTCTGCAGGAGGCCAAAAAGC  500

seq1  AAGGTAGAGCACTTGTCTATGGCTTGGCCCTTACACCCATAAGCCCAGGG  531
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTAGAGCACTTGTCTATGGCTTGGCCCTTACACCCATAAGCCCAGGG  550

seq1  TAGGGTTGGCAGCTGTCACTGAGCCCAAGATGCCCATGAGCTACTCTGGG  581
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGTTGGCAGCTGTCACTGAGCCCAAGATGCCCATGAGCTACTCTGGG  600

seq1  GTCCTTACATACATCCAATAAAACACAAGGGGCCAGTACCCCCCAGAGTA  631
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTACATACATCCAATAAAACACAAGGGGCCAGTACCCCCCAGAGTA  650

seq1  GATTTTGTACCCTGCAGTCAGTAGAAAGGAAAAGAGAATGAAATCCTCCG  681
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTGTACCCTGCAGTCAGTAGAAAGGAAAAGAGAATGAAATCCTCCG  700

seq1  TGTGTCTCATCTGGGGATGGCTGGAAGTGCTCAGCTGTATCCTAAGCTCC  731
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCTCATCTGGGGATGGCTGGAAGTGCTCAGCTGTATCCTAAGCTCC  750

seq1  TTGTCACCTAGCACATCAAATCAGCTGCCTGCCTGTTGCTGTGGCAACCA  781
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCACCTAGCACATCAAATCAGCTGCCTGCCTGTTGCTGTGGCAACCA  800

seq1  AGCCATTCTGCTGCAGCCTGCCAGAGCAGCCTGGTTTTCATCTCTAGGAG  831
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATTCTGCTGCAGCCTGCCAGAGCAGCCTGGTTTTCATCTCTAGGAG  850

seq1  AGTGGTCTTGCAACTGCAAATGGCGTCTAAGCCCAGGCTGACCCTGTGGC  881
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTCTTGCAACTGCAAATGGCGTCTAAGCCCAGGCTGACCCTGTGGC  900

seq1  CCCCACTCAGCCATTCTATCCTAAAGTTGAGGTTTGCCGATGGAAAGGTA  931
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACTCAGCCATTCTATCCTAAAGTTGAGGTTTGCCGATGGAAAGGTA  950

seq1  TGGTCTGAACTTATCTGTCTATAACCCTGGTAGGTAGCTGGCACTCCAAG  981
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTGAACTTATCTGTCTATAACCCTGGTAGGTAGCTGGCACTCCAAG  1000

seq1  GGACCACAGTGGCAGTTCTAAGACTGAATACCAGAAGGACACCCCTCCAT  1031
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCACAGTGGCAGTTCTAAGACTGAATACCAGAAGGACACCCCTCCAT  1050

seq1  TTGGAGCAGCAGGCCTAGGATCACCTGAGAATTC  1065
      ||||||||||||||||||||||||||||||||||
seq2  TTGGAGCAGCAGGCCTAGGATCACCTGAGAATTC  1084