BAC Information

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BAC

Clone NameB6Ng01-205M10
Chromosome17 (Build37)
Map Location 75,526,023 - 75,664,224
singlet/doubletdoublet
Overlap geneLtbp1, EG621988
Upstream geneMemo1, EG668716, 2810410M20Rik, LOC668773, LOC668775, Spast, Slc30a6, Nlrc4, LOC100043883, LOC624159, Yipf4, Birc6, Ttc27, LOC100043672
Downstream geneRasgrp3, 2810405J04Rik, LOC668787, LOC100043885
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-205M10.bB6Ng01-205M10.g
ACCGA025365GA025366
length1,0811,060
definitionB6Ng01-205M10.b B6Ng01-205M10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,663,147 - 75,664,224)(75,526,023 - 75,527,076)
sequence
gaattcaactgagaacctaaggctggaaagtagtggagaggactcaaaga
tgtcaggggctttagtctaagaaaagaggaaaggtttcataaatggagaa
tgccaggaggtgaggaattctgtttcacagttcaaggtcccattgtgata
cccaagcataaacatccagcagtagaaggttctggaataaagtaagagta
gaatactgtgcctggaaacagatgccccatgggccagtcctggaaaaatc
aaaaggatctgagaggggaagatacaagtgagatgactaaaatataaaac
aaaagccttcatagtcctgtgtaaaggtaatcaagactgaaaaaaaaaag
aatatgttaaaaatgaaaaactagtagccatttttatttgatccagtgtg
ggctatgaaggttaacaattaacagatgttggccgttagcgtgcctatgt
caaggaactttcatgtctttccatcacgaattcttctgcaatctttttat
ggagagtcttaaatttattaatttcctaaattaagattggacacaatgat
aaagtattacagaatcttcacatcaaaatcaaatactccccttaataaat
cattattcaagaaaatattattgaaacataaattctagaagaatttctac
aaagtcatggttatttacattataggtatttcctctaagccacacacttt
taacattttcatttctaagttttttcactgtctgaggtattagattccat
gagaacactttcatttgagtacatgttggatgctgagcagtgcttttagt
taacatcagtgacaaaatgtaccttgttgcatgatatacaaatgaaaaat
ttagtgcatatatgttacataagatgtatcaagcgccaactggatgcatc
tggaaacaactagattgtacccagaagaagacctggcccagcacctgatc
gtcctatctttttctttttttttctatttcttggactgtggaactgtgct
gggtaacaagtcttttcctatgttgcatataatggaaacttatcccccat
aacttccatccttctttaagaaaccaccatg
gaattctttccagtgagttatttataagatttaaaaccgactgcttggct
cggagttaactctgtcggtagagtgcttgcataacacgcacagggtcctg
ggttcgatcctcatcattatgtaaacagggtgctggggttcatgcttgga
atccaagcacttggaaggtggaggagacaggaggatcaggaactcaagat
caagcttgaccacatagtaggtttgggccagcctgggctacaaaacaaga
gcctttccaagttcattaagcgcagacctaatgcatcttgcatgagctgg
caaacctaatacatcttgcatgagctgagttacatcagccacacaatcaa
ggagctcctaagttgttatgatattgcccaaatatacttgatcaatttcc
taaagcttattgatatgaagctaaggctcacaaatacttatcccgaagct
tagagttggtagattttttttctttctttttactagagtttcccattttc
tgtggaagaatattgtggatttctgtggaagaagagagttggaaaattgg
ggtaattccattatttcatttactttctcacagatgttgtggaatgtatc
atgctggaataattgtaaagggtgggaaaaacctttgaagagactttgtg
gttgtgttcattggctcgagagttgactcctttccctgggtatttcatga
gacatctgcagttcacttggtcggatcgcagatgctgcccttggtggtct
gaagtttctcattacgaggagcaggagccgaggcatactaaatctgtttc
atgcttgtgacattgtcattaatgctggactgccattgctgagtgcttat
tttgtgtcaagcactaagtgctggtcatgaattaccccttttatctttag
cacagtagaccaaagtagatgcttgtatgttcatccttagctatttgact
atagttatataaccagggagcaggaaggcctgggaagaatctccaactct
ctgctaacgacccttactgtttcaaagaagaagtttgggattgaataggt
gcattagtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_75663147_75664224
seq2: B6Ng01-205M10.b_44_1124 (reverse)

seq1  CATGGTGGTTTTCTTAAGAAGAGTG--AGTTATGGGGGAATAGTTTCAAT  48
      |||||||||||  | ||||||  ||  ||||||||||||  |||||| ||
seq2  CATGGTGGTTTCTTAAAGAAGGATGGAAGTTATGGGGGATAAGTTTCCAT  50

seq1  TATATGCCACATA-GAAAAGAC-TGTTA-CCAGCACAG-TACACAGTCCA  94
      ||||||| ||||| |||||||| ||||| ||||||||| | |||||||||
seq2  TATATGCAACATAGGAAAAGACTTGTTACCCAGCACAGTTCCACAGTCCA  100

seq1  AAAAAAAAAAAAAAAAAAAAAAAAAAGAATAGGACGATCAGGTGCTGGGC  144
      | ||| | ||||||||| |||||     ||||||||||||||||||||||
seq2  AGAAATAGAAAAAAAAAGAAAAA----GATAGGACGATCAGGTGCTGGGC  146

seq1  CAGGTCTTCTTCTGGGTACAATCTAGTTGTTTCCAGATGCATCCAGTTGG  194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCTTCTTCTGGGTACAATCTAGTTGTTTCCAGATGCATCCAGTTGG  196

seq1  CGCTTGATACATCTTATGTAACATATATGCACT-AATTTTTCATTTGTAT  243
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CGCTTGATACATCTTATGTAACATATATGCACTAAATTTTTCATTTGTAT  246

seq1  ATCATGCAACAAGGTACATTTTGTCACTGATGTTAACTAAAAGCACTGCT  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGCAACAAGGTACATTTTGTCACTGATGTTAACTAAAAGCACTGCT  296

seq1  CAGCATCCAACATGTACTCAAATGAAAGTGTTCTCATGGAATCTAATACC  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATCCAACATGTACTCAAATGAAAGTGTTCTCATGGAATCTAATACC  346

seq1  TCAGACAGTGAAAAAACTTAGAAATGAAAATGTTAAAAGTGTGTGGCTTA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACAGTGAAAAAACTTAGAAATGAAAATGTTAAAAGTGTGTGGCTTA  396

seq1  GAGGAAATACCTATAATGTAAATAACCATGACTTTGTAGAAATTCTTCTA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAATACCTATAATGTAAATAACCATGACTTTGTAGAAATTCTTCTA  446

seq1  GAATTTATGTTTCAATAATATTTTCTTGAATAATGATTTATTAAGGGGAG  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTATGTTTCAATAATATTTTCTTGAATAATGATTTATTAAGGGGAG  496

seq1  TATTTGATTTTGATGTGAAGATTCTGTAATACTTTATCATTGTGTCCAAT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGATTTTGATGTGAAGATTCTGTAATACTTTATCATTGTGTCCAAT  546

seq1  CTTAATTTAGGAAATTAATAAATTTAAGACTCTCCATAAAAAGATTGCAG  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATTTAGGAAATTAATAAATTTAAGACTCTCCATAAAAAGATTGCAG  596

seq1  AAGAATTCGTGATGGAAAGACATGAAAGTTCCTTGACATAGGCACGCTAA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATTCGTGATGGAAAGACATGAAAGTTCCTTGACATAGGCACGCTAA  646

seq1  CGGCCAACATCTGTTAATTGTTAACCTTCATAGCCCACACTGGATCAAAT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCCAACATCTGTTAATTGTTAACCTTCATAGCCCACACTGGATCAAAT  696

seq1  AAAAATGGCTACTAGTTTTTCATTTTTAACATATTCTTTTTTTTTTCAGT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGGCTACTAGTTTTTCATTTTTAACATATTCTTTTTTTTTTCAGT  746

seq1  CTTGATTACCTTTACACAGGACTATGAAGGCTTTTGTTTTATATTTTAGT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATTACCTTTACACAGGACTATGAAGGCTTTTGTTTTATATTTTAGT  796

seq1  CATCTCACTTGTATCTTCCCCTCTCAGATCCTTTTGATTTTTCCAGGACT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCACTTGTATCTTCCCCTCTCAGATCCTTTTGATTTTTCCAGGACT  846

seq1  GGCCCATGGGGCATCTGTTTCCAGGCACAGTATTCTACTCTTACTTTATT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCATGGGGCATCTGTTTCCAGGCACAGTATTCTACTCTTACTTTATT  896

seq1  CCAGAACCTTCTACTGCTGGATGTTTATGCTTGGGTATCACAATGGGACC  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAACCTTCTACTGCTGGATGTTTATGCTTGGGTATCACAATGGGACC  946

seq1  TTGAACTGTGAAACAGAATTCCTCACCTCCTGGCATTCTCCATTTATGAA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACTGTGAAACAGAATTCCTCACCTCCTGGCATTCTCCATTTATGAA  996

seq1  ACCTTTCCTCTTTTCTTAGACTAAAGCCCCTGACATCTTTGAGTCCTCTC  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTCCTCTTTTCTTAGACTAAAGCCCCTGACATCTTTGAGTCCTCTC  1046

seq1  CACTACTTTCCAGCCTTAGGTTCTCAGTTGAATTC  1078
      |||||||||||||||||||||||||||||||||||
seq2  CACTACTTTCCAGCCTTAGGTTCTCAGTTGAATTC  1081

seq1: chr17_75526023_75527076
seq2: B6Ng01-205M10.g_71_1130

seq1  GAATTCTTTCCAGTGAGTTATTTATAAGATTTAAAACCGACTGCTTGGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCCAGTGAGTTATTTATAAGATTTAAAACCGACTGCTTGGCT  50

seq1  CGGAGTTAACTCTGTCGGTAGAGTGCTTGCATAACACGCACAGGGTCCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAGTTAACTCTGTCGGTAGAGTGCTTGCATAACACGCACAGGGTCCTG  100

seq1  GGTTCGATCCTCATCATTATGTAAACAGGGTGCTGGGGTTCATGCTTGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCGATCCTCATCATTATGTAAACAGGGTGCTGGGGTTCATGCTTGGA  150

seq1  ATCCAAGCACTTGGAAGGTGGAGGAGACAGGAGGATCAGGAACTCAAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAAGCACTTGGAAGGTGGAGGAGACAGGAGGATCAGGAACTCAAGAT  200

seq1  CAAGCTTGACCACATAGTAGGTTTGGGCCAGCCTGGGCTACAAAACAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTTGACCACATAGTAGGTTTGGGCCAGCCTGGGCTACAAAACAAGA  250

seq1  GCCTTTCCAAGTTCATTAAGCGCAGACCTAATGCATCTTGCATGAGCTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTCCAAGTTCATTAAGCGCAGACCTAATGCATCTTGCATGAGCTGG  300

seq1  CAAACCTAATACATCTTGCATGAGCTGAGTTACATCAGCCACACAATCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCTAATACATCTTGCATGAGCTGAGTTACATCAGCCACACAATCAA  350

seq1  GGAGCTCCTAAGTTGTTATGATATTGCCCAAATATACTTGATCAATTTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTCCTAAGTTGTTATGATATTGCCCAAATATACTTGATCAATTTCC  400

seq1  TAAAGCTTATTGATATGAAGCTAAGGCTCACAAATACTTATCCCGAAGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCTTATTGATATGAAGCTAAGGCTCACAAATACTTATCCCGAAGCT  450

seq1  TAGAGTTGGTAGATTTTTTTTCTTTCTTTTTACTAGAGTTTCCCATTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTTGGTAGATTTTTTTTCTTTCTTTTTACTAGAGTTTCCCATTTTC  500

seq1  TGTGGAAGAATATTGTGGATTTCTGTGGAAGAAGAGAGTTGGAAAATTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAAGAATATTGTGGATTTCTGTGGAAGAAGAGAGTTGGAAAATTGG  550

seq1  GGTAATTCCATTATTTCATTTACTTTCTCACAGATGTTGTGGAATGTATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAATTCCATTATTTCATTTACTTTCTCACAGATGTTGTGGAATGTATC  600

seq1  ATGCTGGAATAATTGTAAAGGGTGGGAAAAACCTTTGAAGAGACTTTGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGGAATAATTGTAAAGGGTGGGAAAAACCTTTGAAGAGACTTTGTG  650

seq1  GTTGTGTTCATTGGCTCGAGAGTTGACTCCTTTCCCTGGGTATTTCATGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGTTCATTGGCTCGAGAGTTGACTCCTTTCCCTGGGTATTTCATGA  700

seq1  GACATCTGCAGTTCACTTGGTCGGATCGCAGATGCTGCCCTTGGTGGTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATCTGCAGTTCACTTGGTCGGATCGCAGATGCTGCCCTTGGTGGTCT  750

seq1  GAAGTTTCTCATTACGAGGAGCAGGAGCCGAGGCATACTAAATCTGTTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTTCTCATTACGAGGAGCAGGAGCCGAGGCATACTAAATCTGTTTC  800

seq1  ATGCTTGTGACATTGTCATTAATGCTGGACTGCCATTGCTGAGTGCTTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTGTGACATTGTCATTAATGCTGGACTGCCATTGCTGAGTGCTTAT  850

seq1  TTTGTGTCAAGCACTAAGTGCTGGTCATGAATTACCCCTTTTATCTTTAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGTCAAGCACTAAGTGCTGGTCATGAATTACCCCTTTTATCTTTAG  900

seq1  CACAGTAGACCAAAGTAGATGCTGTTATGTTCAT-CTTAGCTATTTGACT  949
      |||||||||||||||||||||||  ||||||||| |||||||||||||||
seq2  CACAGTAGACCAAAGTAGATGCTTGTATGTTCATCCTTAGCTATTTGACT  950

seq1  ATAGTTATATAACCAGGGAGCAGGAAGGCCTGGGAAG-ATCTCAA---CT  995
      ||||||||||||||||||||||||||||||||||||| ||||| |   ||
seq2  ATAGTTATATAACCAGGGAGCAGGAAGGCCTGGGAAGAATCTCCAACTCT  1000

seq1  CTGCTAACGACCTTTACTGTTTTCAAAGAAGAAG-TTGGGA-TGAGATGG  1043
      |||||||||||| |||||| |||||||||||||| |||||| |||   ||
seq2  CTGCTAACGACCCTTACTG-TTTCAAAGAAGAAGTTTGGGATTGAATAGG  1049

seq1  TGCATTAGTGG  1054
      |||||||||||
seq2  TGCATTAGTGG  1060