BAC Information

Click to search

BAC

Clone NameB6Ng01-208C16
Chromosome17 (Build37)
Map Location 26,700,313 - 26,701,339
singlet/doubletsinglet
Overlap geneErgic1
Upstream geneSox8, Tmem112, LOC545396, Gng13, Chtf18, Rpusd1, BC052484, Msln, Narfl, Haghl, Ccdc78, BC008155, Metrn, Fbxl16, Wdr24, 2610003J06Rik, Stub1, Rhbdl1, Rhot2, Wdr90, 9530058B02Rik, 0610011F06Rik, Wfikkn1, Rab40c, LOC100043160, Pigq, F430201B04Rik, D630044L22Rik, Solh, 1700022N22Rik, Rab11fip3, Decr2, Nme4, EG666609, Tmem8, Mrpl28, Axin1, Pdia2, Arhgdig, Rgs11, Itfg3, LOC100042643, Luc7l, EG383229, EG240055, C230078M08Rik, Dusp1, EG666668
Downstream geneAtp6v0e, A930001N09Rik, Bnip1, Nkx2-5, Kifc1, Phf1, Cuta, Syngap1, Zbtb9, Bak1, Ggnbp1, Itpr3, 2900010M23Rik, Ihpk3, Lemd2, LOC100042713, ENSMUSG00000073430, Grm4, LOC677010, Hmga1, AI413582
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-208C16.b
ACCGA027117
length1,033
definitionB6Ng01-208C16.b
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctccgccagcagctggcacatgcaatcacactggaaaaactggag
aggtgtgttttgcccaaggggggacctctagtcaagtacccttccacctg
ccgaggccaccacatacaaactggatataaatcctggcccttaagaggtc
agatactgatgaaagggaagagaagatggcacaattcgctaattacagag
caggtgcctcggtcaaagggtacaataatggcggctggcaaaagacagtg
cttgctggtcccacatgccacctggtctcatgtgaggatgtccatcatac
ccatttcctacgcaggaaaacacacccaatttaggaagctgggttcccct
tggtcttgaactggtgggaaatggggatgttctaatcactgtacgccccc
tgagctccccactattaaaaggtttgacaaagtggtggcttttcaagatt
ccccttgtgccccagagctaaggcttcaatgccaataggccaaactccga
ctccagctttatctatatccatgcaaagtgcttttgccagaggggtcacc
ctcaccagggtttaaaaggaagactcattcactctcttcattgactaagg
gatggatgtcaagtttgcttatatagtggctactcctacaacccaatcat
gtgacacgttccccctcccccccacacatgcaacactcctctggtaattc
cacagggttgtgccatatgccaccccatcccctaatgatagtccaagtgg
caggtggctaaacactgcggtacaacccctcagcaagccgatgagtggcc
ctgtatgtggtaaaggtctgtataacggcggagcctttccttcacagtga
gtgctaaagctctgctatgtcaacgttgggaaagagtagaaagacatggg
ctggaccccagctcacccttcttgaggatatctaacggcggggaatccat
ttcttactgatctccagtgagcgccagctagcaaagacttttctcaactg
gcattaatggggaacccgtgggacacgggcact
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_26700313_26701339
seq2: B6Ng01-208C16.b_42_1074 (reverse)

seq1  AGTGCCCGGGTGCCACAGGGTTCCCACTAATGCCAGTTGAG-AAAGTCCT  49
      |||||||| || |||| || | |||| |||||||||||||| |||||| |
seq2  AGTGCCCGTGTCCCACGGGTTCCCCATTAATGCCAGTTGAGAAAAGTCTT  50

seq1  TGCTTGCTGGGGCTCACTGGAGACCAGTAAG-AATGGATTCCCCACCGTT  98
      |||| ||||| |||||||||||| ||||||| |||||||||||| |||||
seq2  TGCTAGCTGGCGCTCACTGGAGATCAGTAAGAAATGGATTCCCCGCCGTT  100

seq1  CGATCTCCTCACGCAGGGTGAGCTGTGGGTCCAGCCCATGTCTTTCTTCT  148
       ||| |||||| | ||||||||||| ||||||||||||||||||||| ||
seq2  AGATATCCTCAAGAAGGGTGAGCTG-GGGTCCAGCCCATGTCTTTCTACT  149

seq1  CTTT-CAGACGTTGACATAGCAGAGCTCTAGGACTCACTGTGAAGG-AAG  196
      |||| |  ||||||||||||||||||| ||| |||||||||||||| |||
seq2  CTTTCCCAACGTTGACATAGCAGAGCTTTAGCACTCACTGTGAAGGAAAG  199

seq1  GCTCCGCCGTTCTACAGACCTTTACCACATACAGGGCCACTCATCGGCTT  246
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GCTCCGCCGTTATACAGACCTTTACCACATACAGGGCCACTCATCGGCTT  249

seq1  GCTGA-GGGTTGTACC-CAGTGTTTAGCCACCTGCCACTTGGACTATCAT  294
      ||||| |||||||||| |||||||||||||||||||||||||||||||||
seq2  GCTGAGGGGTTGTACCGCAGTGTTTAGCCACCTGCCACTTGGACTATCAT  299

seq1  TAGGGGAT-GGGTGGCATATGGCACAACCCTGTGGAATTGCCAGAGGAGT  343
      |||||||| |||||||||||||||||||||||||||||| ||||||||||
seq2  TAGGGGATGGGGTGGCATATGGCACAACCCTGTGGAATTACCAGAGGAGT  349

seq1  GTTGCATGTGTGGGGGGGAGGGGGAACGTGTCACATGACTGGGTTCTAGG  393
      |||||||||||||||||||||||||||||||||||||| |||||| ||||
seq2  GTTGCATGTGTGGGGGGGAGGGGGAACGTGTCACATGATTGGGTTGTAGG  399

seq1  AGTAGCCACTATATAAGCAAACTTGACATCCATCCCTTTGTCACTGAAGA  443
      |||||||||||||||||||||||||||||||||||||| |||| ||||||
seq2  AGTAGCCACTATATAAGCAAACTTGACATCCATCCCTTAGTCAATGAAGA  449

seq1  GAGTGAATGAGTCTTCCTTTTAAACCCTGGTGAGGGTGACCCCTCTGGCA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGAATGAGTCTTCCTTTTAAACCCTGGTGAGGGTGACCCCTCTGGCA  499

seq1  AAAGCACTTTGCATGGATATAGATAAAGCTGGAGTCGGAGTTTGGCCTAT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCACTTTGCATGGATATAGATAAAGCTGGAGTCGGAGTTTGGCCTAT  549

seq1  TGGCATTGAAGCCTTAGCTCTGGGGCACAAGGGGAATCTTGAAAAGCCAC  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATTGAAGCCTTAGCTCTGGGGCACAAGGGGAATCTTGAAAAGCCAC  599

seq1  CACTTTGTCAAACCTTTTAATAGTGGGGAGCACAGGGGGCGTACAGTGAT  643
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CACTTTGTCAAACCTTTTAATAGTGGGGAGCTCAGGGGGCGTACAGTGAT  649

seq1  TAGAACATCCCCATTTCCCACCAGTTCAAGACCAAGGGGAACCCAGCTTC  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACATCCCCATTTCCCACCAGTTCAAGACCAAGGGGAACCCAGCTTC  699

seq1  CTAACTTGGGTGTGTTTTCCTGCCTAGGAAATGGGTATGATCGACATCCT  743
      |||| |||||||||||||||||| ||||||||||||||||| ||||||||
seq2  CTAAATTGGGTGTGTTTTCCTGCGTAGGAAATGGGTATGATGGACATCCT  749

seq1  CACATGAGACCAGGTGGCATGTGGGACCAGCAAGCACTGTCCTCTGCCTG  793
      ||||||||||||||||||||||||||||||||||||||||| | |||| |
seq2  CACATGAGACCAGGTGGCATGTGGGACCAGCAAGCACTGTCTTTTGCCAG  799

seq1  CCGCCATTATTGTACCCTTTGACCGAGGCACCTGCTCTGTAATTAGCGAA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCCATTATTGTACCCTTTGACCGAGGCACCTGCTCTGTAATTAGCGAA  849

seq1  TTCTGCCATCTTCTCTTCCCTTTCATCAGTATCTGACCTCCTAAGGGCCA  893
      || ||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TTGTGCCATCTTCTCTTCCCTTTCATCAGTATCTGACCTCTTAAGGGCCA  899

seq1  GGATTTATATCCAGTTTGTATGTGGTTGCGTCTGCAGGTGGAATGGTACT  943
      |||||||||||||||||||||||||| || || |||||||||| ||||||
seq2  GGATTTATATCCAGTTTGTATGTGGTGGCCTCGGCAGGTGGAAGGGTACT  949

seq1  TGACTAGAGGTCCCCCCTTGGGCAAAACACACCTCTCCAGTTTGTCCAGT  993
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TGACTAGAGGTCCCCCCTTGGGCAAAACACACCTCTCCAGTTTTTCCAGT  999

seq1  GTGATTGCATGTGCCAGCTGCTGGTGGAGAATTC  1027
      |||||||||||||||||||||||| |||||||||
seq2  GTGATTGCATGTGCCAGCTGCTGGCGGAGAATTC  1033