BAC Information

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BAC

Clone NameB6Ng01-208M06
Chromosome17 (Build37)
Map Location 20,800,231 - 20,801,413
singlet/doubletsinglet
Overlap geneEG433073
Upstream geneEG224572, EG627618, EG627636, LOC100042273, LOC210465, LOC670534, EG627664, V2r7, LOC100041856, EG545190, Fpr-rs7, Fpr-rs6, EG627743, EG224576, V2r6, EG637720, EG665525, EG627805, V1re5, EG627814, EG381065, EG224582, Fpr-rs3
Downstream geneV1re2, V1re6, LOC100041976, V1re3, V1re1, V1re8, V1re7, V1re4, LOC627884, Ppp2r1a, V1rf5, Zfp160, LOC627912, LOC435509, EG627924, 4933430A09, EG665654, EG665662, LOC665666, EG665669, V1rf1, V1rf2, V1rf4, V1rf3, A830058L05Rik, Zfp54, Zfp51, Zfp53, LOC100042508, Zfp52, BC049807
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-208M06.bB6Ng01-208M06.g
ACCGA027557GA027558
length1,2041,168
definitionB6Ng01-208M06.b B6Ng01-208M06.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctaagattaatgatgaaaatgagaattattcattgttcaataatt
aataaaaaatgaagttattggtttaacatttgccttctgtccactcagtg
tccactgtaggaagttttaagccgacatagaagtgaaatatcatcttttg
gactcatatataagtcattggtccccacatttccctgtaagtggataatt
cattataatgagttggaaacacagagagctattgagcttatggtttttgc
ttactcaaagaaagttgaaaccagtcaaaggaagaagaagatgttctgaa
acagaatcacatttgctccatcactgatcctcacgtcacccaaatgtgct
ggataggatgacacagcacaataacaaattggaagagtgaattaaaaacc
tcttcaatacttagggaagcaatttaatgagtttcaaattcctgacaaca
ctcataccctataacaagtttgtcattcacaagcagccctcagtagttct
gtttcctgaaagagaacatcatgaagatagttgaacaagtgcctgtcttg
tagaagaaacttgttttgggtatatgtccaagattagtatggctggatgc
tgttgaggattgattctcattcttctgaagagtaccacattgattttcat
agtggatttaaacgtttcattcccagtagcaatggagcagtgttccattt
atcccaaatgcttgctagcatgagctgtcacttgcttttttggttgtgac
agttcttattggtgtaagttaacatcaagttaacttggacaagttaacac
agttgttttgatttgcatttccctgatgatgatggattttgatcatatct
ttaagtgattttcagccatttgggtttctgctattggctgtcataaattg
tctgtttatatcggtattccatatgtaaactgggttatttgttttctgat
gtccaaggtttttatttttatatatttgaatataaactctatatcaaatg
catgtttggtaaaaaaaaatatactattttataccttgttcctttttgtc
caatgagttgtcttttgcaatacagaagctttctcattgcatgaagttca
attgttaatgtctagtcttgtgttaagggtgttctgttagaaaggttttc
cggtggctatgaagtcaatcatatcttcctgaaacttgctgtttccatac
tcca
gaattcacagtcaacaaacctcttattgtctataattgaattttagtatc
tgcaaagaatatcaatgagaataaaatttatattggtatatctaaagata
aattacctatattttatgtcaaagggaattgtaagatgactaatttaatg
atttattattgagagagagtttcaaaacattatataatgtaaaaagtata
tgctgagaaagtcacatgaatgtgacagataaaagtatcagtagtaacat
aggcactagtaaatgatcataaatcttggaataccttttccattgataaa
gtatagatttagaattcacactaaagcaatacctttgtgtatcagacctt
tcaataatatattggatcgtcatttatcaggactctatcagtacttagga
cactggaggatatagcttagtgctactgcacttaaccagtatgtaagatg
ttctaagttcaatacttgatagttgaaaacaagaaacacataatttataa
agatatttaacgtgggtaacttttattacaatattggagatattactgaa
gtaatggagccttgagaaaagtgacaaatagaatatcttcaagagataag
tgggcagagatatgtctcagtggttaagaccccttgctatattaaaaaca
aaacaaaaccttaacctgatgtgcatttaggaacatgatacagtgaatga
tatttctggttgtcttgtcatagatttggtaaattttaacctagtaaagt
tacttccatcagaggtttaagtttaaaaacttatagtgtaggagagatgt
ttgcatatacaatcttagtaacttgttatctgggattctaatatatttca
aaatgcttaaaatatattaaaataatataaaaaacttgaacatatttgcc
actttggtgggtaacatccagtttaggcagttattataaacataattata
aattcaccttctgtttgaaggtatgtttgattcgagttttatgaaaataa
gtgcctaaatgctcattatctcacaaagaatatgtaatcatagtatttat
gaggcatagaaaatgaattattataccgattgaagtaattgcctaaggac
aatgggcatttcttatttgcttactgcaaatacgaccatgagttcttatc
aaacttctgtacatatct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_20800231_20801413
seq2: B6Ng01-208M06.g_68_1235

seq1  GAATTCACAGTCAACAAACCTCTTATTGTCTATAATTGAATTTTAGTATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGTCAACAAACCTCTTATTGTCTATAATTGAATTTTAGTATC  50

seq1  TGCAAAGAATATCAATGAGAATAAAATTTATATTGGTATATCTAAAGATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAGAATATCAATGAGAATAAAATTTATATTGGTATATCTAAAGATA  100

seq1  AATTACCTATATTTTATGTCAAAGGGAATTGTAAGATGACTAATTTAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACCTATATTTTATGTCAAAGGGAATTGTAAGATGACTAATTTAATG  150

seq1  ATTTATTATTGAGAGAGAGTTTCAAAACATTATATAATGTAAAAAGTATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTATTGAGAGAGAGTTTCAAAACATTATATAATGTAAAAAGTATA  200

seq1  TGCTGAGAAAGTCACATGAATGTGACAGATAAAAGTATCAGTAGTAACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGAGAAAGTCACATGAATGTGACAGATAAAAGTATCAGTAGTAACAT  250

seq1  AGGCACTAGTAAATGATCATAAATCTTGGAATACCTTTTCCATTGATAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACTAGTAAATGATCATAAATCTTGGAATACCTTTTCCATTGATAAA  300

seq1  GTATAGATTTAGAATTCACACTAAAGCAATACCTTTGTGTATCAGACCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAGATTTAGAATTCACACTAAAGCAATACCTTTGTGTATCAGACCTT  350

seq1  TCAATAATATATTGGATCGTCATTTATCAGGACTCTATCAGTACTTAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATAATATATTGGATCGTCATTTATCAGGACTCTATCAGTACTTAGGA  400

seq1  CACTGGAGGATATAGCTTAGTGCTACTGCACTTAACCAGTATGTAAGATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGAGGATATAGCTTAGTGCTACTGCACTTAACCAGTATGTAAGATG  450

seq1  TTCTAAGTTCAATACTTGATAGTTGAAAACAAGAAACACATAATTTATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAGTTCAATACTTGATAGTTGAAAACAAGAAACACATAATTTATAA  500

seq1  AGATATTTAACGTGGGTAACTTTTATTACAATATTGGAGATATTACTGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATTTAACGTGGGTAACTTTTATTACAATATTGGAGATATTACTGAA  550

seq1  GTAATGGAGCCTTGAGAAAAGTGACAAATAGAATATCTTCAAGAGATAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATGGAGCCTTGAGAAAAGTGACAAATAGAATATCTTCAAGAGATAAG  600

seq1  TGGGCAGAGATATGTCTCAGTGGTTAAGACCCCTTGCTATATTAAAAACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCAGAGATATGTCTCAGTGGTTAAGACCCCTTGCTATATTAAAAACA  650

seq1  AAACAAAACCTTAACCTGATGTGCATTTAGGAACATGATACAGTGAATGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAACCTTAACCTGATGTGCATTTAGGAACATGATACAGTGAATGA  700

seq1  TATTTCTGGTTGTCTTGTCATAGATTTGGTAAATTTTAACCTAGTAAAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTGGTTGTCTTGTCATAGATTTGGTAAATTTTAACCTAGTAAAGT  750

seq1  TACTTCCATCAGAGGTTTAAGTTTAAAAACTTATAGTGTAGGAGAGATGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCCATCAGAGGTTTAAGTTTAAAAACTTATAGTGTAGGAGAGATGT  800

seq1  TTGCATATACAATCTTAGTAACTTGTTATCTGGGATTCTAATATATTTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATATACAATCTTAGTAACTTGTTATCTGGGATTCTAATATATTTCA  850

seq1  AAATGCTTAAAATATATTAAAATAATATAAAAAACTTGAACATATTTGCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCTTAAAATATATTAAAATAATATAAAAAACTTGAACATATTTGCC  900

seq1  ACTTT-GTGGGTAACATCCAGTTTAGGCAGTTAATATAAACATAATTATA  949
      ||||| ||||||||||||||||||||||||||| ||||||||||||||||
seq2  ACTTTGGTGGGTAACATCCAGTTTAGGCAGTTATTATAAACATAATTATA  950

seq1  AATTCACCTTCTGTTTTGAGGTATGTTTTGATTCGGAGTTTTATGAAAAT  999
      ||||||||||||||||  ||||||| |||||||| |||||||||||||||
seq2  AATTCACCTTCTGTTTGAAGGTATG-TTTGATTC-GAGTTTTATGAAAAT  998

seq1  AAGTGCCTAAATGCTCATTATCTCACAAAG-ATATGTAATCATAGTTAAT  1048
      |||||||||||||||||||||||||||||| |||||||||||||||  ||
seq2  AAGTGCCTAAATGCTCATTATCTCACAAAGAATATGTAATCATAGT--AT  1046

seq1  TTATGAGGCATAGGAAAATGAAATTATTACA-CGATTGAAAGTAAATTGC  1097
      |||||||||||| ||||||| |||||||| | |||||| |||| ||||||
seq2  TTATGAGGCATA-GAAAATG-AATTATTATACCGATTG-AAGT-AATTGC  1092

seq1  TAAAGGACAATTGGGCCATTTCCTTATTTTTGC-TACTGCAAATAAACGA  1146
        |||||||||  || ||||| ||||  ||||| ||||||||||  ||| 
seq2  CTAAGGACAAT--GGGCATTT-CTTA--TTTGCTTACTGCAAAT--ACG-  1134

seq1  ACAATGAATGTTCTTATACAAAACTTCTGTAC-TATCT  1183
      || ||||  ||||||||   |||||||||||| |||||
seq2  ACCATGA--GTTCTTAT--CAAACTTCTGTACATATCT  1168