BAC Information

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BAC

Clone NameB6Ng01-209K24
Chromosome17 (Build37)
Map Location 59,094,764 - 59,271,042
singlet/doubletdoublet
Overlap gene2610034M16Rik, Nudt12, 4930505H01Rik
Upstream geneCntnap5c, LOC620408, EG545216, LOC668648
Downstream geneLOC100043537, LOC100043542
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-209K24.bB6Ng01-209K24.g
ACCGA028241GA028242
length1,1791,131
definitionB6Ng01-209K24.b B6Ng01-209K24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,269,896 - 59,271,042)(59,094,764 - 59,095,886)
sequence
gaattcataatcacttcagacactagatagtatacatctcattttcagaa
agggaaaaacaaaaacaaaaaaacaaacaaacaaacaacaacaacaaaaa
cactgagaaatttaatgaagaagtaaagcggcaaccttcaccattttgtt
atgacccctattttctgtttttcttctccctcctctcattacatcataag
cttctccaagagggactccttatctttggctgcactctgaactaaactat
gcccccccccactaaaaatgtacctgttgaaatctcaaacattaactttt
taagatatggctgtctttgaaaatagaatcttggacaggctaaataacct
gatatccattaaatgggtcgtctctagcccaatttgactgttctggatga
agagataccaggatgtgtatgttcagaagggaggccattatagcgcatag
taatgaagtagctatctcaaagtcataaagagtggcagcctcaggatgtc
caagccagttgacatgaagattgactcagaccccttagaactgtgaaaag
aaaacctaggtagtttgcaaagtcttagatatttttctatgacaaactgg
taaagaagtaaactctccatacaacatctgctcctgtaactagcacacaa
taggtactcaatttacaaaggaaggaaaggaatactgaagggactgagaa
gaagaagaggtacccaaagatattgaaattattggccccaacataaaaat
ttccattcatctatgcctttccaatgaaatcagtactacacctcatagtt
ctaaaagtcatggtgcttgttttcacatggtgccttgtgtacttgccaac
ttaacatatttaattatttttaatatgtacctgcaggacagtaatcttat
tgtgcaatggctccctatatctccacatttaaagtcagcagtttatatta
tgaagagagaaaagtagaccgccacacctgtgattatctctatttttggc
ttcaagcataaatttttatgcattgaaggactttgcttattgctaaatca
ataaggaattccacattactcacctaccagattaccttttgtttgatatt
cttgaatcttctaagataaagaacaggggaattgaattggggagggggag
cttttaatatgtgcctttccggttagaat

gaattctgtgtctttaagagaaatgaacttgtctttccacattaccttcc
atctttctttgcaccctggtcagaaagttcaaactcgaagaaaacccaac
tctatttctttcagtctttcatgcaggcatagttggaaaaaaaaatcaag
cttcagaaccaaaagttattttaaaaaaaaaaaactgcataatttatttg
cattttaaacatggtattcggaatgaggggcttaaagaacatacgtcttc
tgttcttcaaagactggccttccaatgtcctgatctcctgtcttatttcc
tgagactgtaggcgtatgcttcagcagtgctcccgaaagcgcagtagagc
atcttactcccctctctgtttctccttatacactgtaatggtccctatgc
ctttctcgggaagtctctgggagaaatcatccatccatacctgacctagc
aaggcagagttctgctgtaggtcaattacagaacgcacttgactccctcc
aaccagccccaccaatgctctctcggttttctctggagacccactcttaa
tggttcttgtgcattcccactttcagtttcttagtgccagactgcagaga
ataattattagtcattgtcctgacacatagacacatgaacaataggtttc
catcttgcacatttgcttaaattatgtgagactgcaatagatatttgatg
gcttgggtggtttcgggcacattcattcactcaccaaattgatttgaaat
aaatgatcttctctgataaggtgggtgcgattcattttatgtacattggg
ggatacaatgatgggtaaaacattgtgggtgcagtgtgagagttcagagg
aagagagtggggcagctagctacagagagagggggaaatgtattcaaagg
gaaatgtatcttcaacaatccctttcaaagaatcaggtgggggaagagaa
gggatacacaggagggagtgaagcactactggtcataaaatcacggatga
caaacttaccaccttttgcatggtcagcatatgttcagagtatgaagatt
accacatctgcttgggtcactaatgaatgtagatgtaagaaaaactgtac
aaatcatgtggcagatattattcctaaaata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_59269896_59271042
seq2: B6Ng01-209K24.b_49_1227 (reverse)

seq1  ATTCTAACAGGAA--GCACATATTAAAAGCT--CCCTCCC--ATTCA---  41
      |||||||| ||||  ||||||||||||||||  |||||||  |||||   
seq2  ATTCTAACCGGAAAGGCACATATTAAAAGCTCCCCCTCCCCAATTCAATT  50

seq1  TCCCTTTTC-TTATCTTTAGAAGA-TCA--GATATCAAA-ACAAAGTAAT  86
       |||| ||| ||||| |||||||| |||   |||||||| | || |||||
seq2  CCCCTGTTCTTTATC-TTAGAAGATTCAAGAATATCAAACAAAAGGTAAT  99

seq1  CT-GTA-GTGAGT-ATGT-GAAT--CTTTATGATTTAGC-ATAAGCAAGG  129
      || ||| |||||| |||| ||||  |||  ||||||||| |||||||| |
seq2  CTGGTAGGTGAGTAATGTGGAATTCCTTATTGATTTAGCAATAAGCAAAG  149

seq1  TCCTTCAATGCAT-AAAATATATGCTGGAAGC--AAAATAGAGAT-ATCA  175
      ||||||||||||| ||||| |||||| |||||  ||||||||||| ||||
seq2  TCCTTCAATGCATAAAAATTTATGCTTGAAGCCAAAAATAGAGATAATCA  199

seq1  CAGGTGTGGC-GTCTACTTTTCTCTCTTCAT-ATAT-AACTGCTGACTTT  222
      |||||||||| |||||||||||||||||||| |||| |||||||||||||
seq2  CAGGTGTGGCGGTCTACTTTTCTCTCTTCATAATATAAACTGCTGACTTT  249

seq1  AAATGTGGAGATATA-GGAGCCA-TGCACAATAAGATTACTGTCCTGCAG  270
      ||||||||||||||| ||||||| ||||||||||||||||||||||||||
seq2  AAATGTGGAGATATAGGGAGCCATTGCACAATAAGATTACTGTCCTGCAG  299

seq1  GTACATTATAAAAATAAATAAATATG-TAAGTTGGCAAGTACACAAGGCA  319
      ||||||  ||||||||| |||||||| |||||||||||||||||||||||
seq2  GTACATATTAAAAATAATTAAATATGTTAAGTTGGCAAGTACACAAGGCA  349

seq1  -CATGTGAAAACAAGCACCATGACTTTTAGAACTATGAGGTGTAGTACTG  368
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTGAAAACAAGCACCATGACTTTTAGAACTATGAGGTGTAGTACTG  399

seq1  ATTTCATTGGAAAGGCATAGATGAATGGAAATTTTTATGTTGGGGCCAAT  418
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCATTGGAAAGGCATAGATGAATGGAAATTTTTATGTTGGGGCCAAT  449

seq1  AATTTCAATATC-TTGGGTACCTCTTCTTCTTCTCAGTCCCTTCAGTATT  467
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AATTTCAATATCTTTGGGTACCTCTTCTTCTTCTCAGTCCCTTCAGTATT  499

seq1  CCTTTCCTTCCTTTGTAAATTGAGTACCTATTGTGTGCTAGTTACAGGAG  517
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCCTTCCTTTGTAAATTGAGTACCTATTGTGTGCTAGTTACAGGAG  549

seq1  CAGATGTTGTATGGAGAGTTTACTTCTTTACCAGTTTGTCATAGAAAAAT  567
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGTTGTATGGAGAGTTTACTTCTTTACCAGTTTGTCATAGAAAAAT  599

seq1  ATCTAAGACTTTGCAAACTACCTAGGTTTTCTTTTCACAGTTCTAAGGGG  617
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAAGACTTTGCAAACTACCTAGGTTTTCTTTTCACAGTTCTAAGGGG  649

seq1  TCTGAGTCAATCTTCATGTCAACTGGCTTGGACATCCTGAGGCTGCCACT  667
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGTCAATCTTCATGTCAACTGGCTTGGACATCCTGAGGCTGCCACT  699

seq1  CTTTATGACTTTGAGATAGCTACTTCATTACTATGCGCTATAATGGCCTC  717
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATGACTTTGAGATAGCTACTTCATTACTATGCGCTATAATGGCCTC  749

seq1  CCTTCTGAACATACACATCCTGGTATCTCTTCATCCAGAACAGTCAAATT  767
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTGAACATACACATCCTGGTATCTCTTCATCCAGAACAGTCAAATT  799

seq1  GGGCTAGAGACGACCCATTTAATGGATATCAGGTTATTTAGCCTGTCCAA  817
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTAGAGACGACCCATTTAATGGATATCAGGTTATTTAGCCTGTCCAA  849

seq1  GATTCTATTTTCAAAGACAGCCATATCTTAAAAAGTTAATGTTTGAGATT  867
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTATTTTCAAAGACAGCCATATCTTAAAAAGTTAATGTTTGAGATT  899

seq1  TCAACAGGTACATTTTTAGTGGGGGGGGGCATAGTTTAGTTCAGAGTGCA  917
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACAGGTACATTTTTAGTGGGGGGGGGCATAGTTTAGTTCAGAGTGCA  949

seq1  GCCAAAGATAAGGAGTCCCTCTTGGAGAAGCTTATGATGTAATGAGAGGA  967
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAAGATAAGGAGTCCCTCTTGGAGAAGCTTATGATGTAATGAGAGGA  999

seq1  GGGAGAAGAAAAACAGAAAATAGGGGTCATAACAAAATGGTGAAGGTTGC  1017
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAAGAAAAACAGAAAATAGGGGTCATAACAAAATGGTGAAGGTTGC  1049

seq1  CGCTTTACTTCTTCATTAAATTTCTCAGTGTTTTTGTTGTTGTTGTTTGT  1067
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTTTACTTCTTCATTAAATTTCTCAGTGTTTTTGTTGTTGTTGTTTGT  1099

seq1  TTGTTTGTTTTTTTGTTTTTGTTTTTCCCTTTCTGAAAATGAGATGTATA  1117
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGTTTTTTTGTTTTTGTTTTTCCCTTTCTGAAAATGAGATGTATA  1149

seq1  CTATCTAGTGTCTGAAGTGATTATGAATTC  1147
      ||||||||||||||||||||||||||||||
seq2  CTATCTAGTGTCTGAAGTGATTATGAATTC  1179


seq1: chr17_59094764_59095886
seq2: B6Ng01-209K24.g_69_1199

seq1  GAATTCTGTGTCTTTAAGAGAAATGAACTTGTCTTTCCACATTACCTTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGTCTTTAAGAGAAATGAACTTGTCTTTCCACATTACCTTCC  50

seq1  ATCTTTCTTTGCACCCTGGTCAGAAAGTTCAAACTCGAAGAAAACCCAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTCTTTGCACCCTGGTCAGAAAGTTCAAACTCGAAGAAAACCCAAC  100

seq1  TCTATTTCTTTCAGTCTTTCATGCAGGCATAGTTGGAAAAAAAAATCAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTTCTTTCAGTCTTTCATGCAGGCATAGTTGGAAAAAAAAATCAAG  150

seq1  CTTCAGAACCAAAAGTTATTTTAAAAAAAAAAAACTGCATAATTTATTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGAACCAAAAGTTATTTTAAAAAAAAAAAACTGCATAATTTATTTG  200

seq1  CATTTTAAACATGGTATTCGGAATGAGGGGCTTAAAGAACATACGTCTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTAAACATGGTATTCGGAATGAGGGGCTTAAAGAACATACGTCTTC  250

seq1  TGTTCTTCAAAGACTGGCCTTCCAATGTCCTGATCTCCTGTCTTATTTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTTCAAAGACTGGCCTTCCAATGTCCTGATCTCCTGTCTTATTTCC  300

seq1  TGAGACTGTAGGCGTATGCTTCAGCAGTGCTCCCGAAAGCGCAGTAGAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACTGTAGGCGTATGCTTCAGCAGTGCTCCCGAAAGCGCAGTAGAGC  350

seq1  ATCTTACTCCCCTCTCTGTTTCTCCTTATACACTGTAATGGTCCCTATGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTACTCCCCTCTCTGTTTCTCCTTATACACTGTAATGGTCCCTATGC  400

seq1  CTTTCTCGGGAAGTCTCTGGGAGAAATCATCCATCCATACCTGACCTAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCGGGAAGTCTCTGGGAGAAATCATCCATCCATACCTGACCTAGC  450

seq1  AAGGCAGAGTTCTGCTGTAGGTCAATTACAGAACGCACTTGACTCCCTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAGAGTTCTGCTGTAGGTCAATTACAGAACGCACTTGACTCCCTCC  500

seq1  AACCAGCCCCACCAATGCTCTCTCGGTTTTCTCTGGAGACCCACTCTTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGCCCCACCAATGCTCTCTCGGTTTTCTCTGGAGACCCACTCTTAA  550

seq1  TGGTTCTTGTGCATTCCCACTTTCAGTTTCTTAGTGCCAGACTGCAGAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCTTGTGCATTCCCACTTTCAGTTTCTTAGTGCCAGACTGCAGAGA  600

seq1  ATAATTATTAGTCATTGTCCTGACACATAGACACATGAACAATAGGTTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTATTAGTCATTGTCCTGACACATAGACACATGAACAATAGGTTTC  650

seq1  CATCTTGCACATTTGCTTAAATTATGTGAGACTGCAATAGATATTTGATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTGCACATTTGCTTAAATTATGTGAGACTGCAATAGATATTTGATG  700

seq1  GCTTGGGTGGTTTCGGGCACATTCATTCACTCACCAAATTGATTTGAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGGTGGTTTCGGGCACATTCATTCACTCACCAAATTGATTTGAAAT  750

seq1  AAATGATCTTCTCTGATAAGGTGGGTGCGATTCATTTTATGTACATT-GG  799
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AAATGATCTTCTCTGATAAGGTGGGTGCGATTCATTTTATGTACATTGGG  800

seq1  GGATACAATGATGGGTAAAACATTGT-GGTGCAGTGTGAGAGTTCAGAGG  848
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GGATACAATGATGGGTAAAACATTGTGGGTGCAGTGTGAGAGTTCAGAGG  850

seq1  AAGAGAGTGGGGCAGCTAGCTACAGAGAGA-GGGGAAATGTA-TCAAA-G  895
      |||||||||||||||||||||||||||||| ||||||||||| ||||| |
seq2  AAGAGAGTGGGGCAGCTAGCTACAGAGAGAGGGGGAAATGTATTCAAAGG  900

seq1  GAAATGTATCTTC-ACAATCCC-TTCAGAGAATCAGGT-GGGGAAGAGAA  942
      ||||||||||||| |||||||| |||| |||||||||| |||||||||||
seq2  GAAATGTATCTTCAACAATCCCTTTCAAAGAATCAGGTGGGGGAAGAGAA  950

seq1  GGGATACACAGGAGGGAGTGAAGCACTACT-GTCATAAAAATCACGGATG  991
      |||||||||||||||||||||||||||||| ||||| |||||||||||||
seq2  GGGATACACAGGAGGGAGTGAAGCACTACTGGTCAT-AAAATCACGGATG  999

seq1  ACAAACTTAACACCTTTTGCAT-GTCAGCATAATGTCAAGAGTATG-AGA  1039
      ||||||||| |||||||||||| |||||||| ||||  |||||||| |||
seq2  ACAAACTTACCACCTTTTGCATGGTCAGCAT-ATGTTCAGAGTATGAAGA  1048

seq1  TTACCACATCTGCTT-GGTCACTATTGGAATGTAGGTGTAAGAAAAAATG  1088
      ||||||||||||||| |||||||| | |||||||| ||||||||||| ||
seq2  TTACCACATCTGCTTGGGTCACTAAT-GAATGTAGATGTAAGAAAAACTG  1097

seq1  TACAAAATCATGTGCAGGATATATATCCTAAAATA  1123
      ||| ||||||||||   |||||   ||||||||||
seq2  TAC-AAATCATGTGGCAGATATTATTCCTAAAATA  1131


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