BAC Information

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BAC

Clone NameB6Ng01-210B12
Chromosome17 (Build37)
Map Location 26,914,767 - 27,054,528
singlet/doubletdoublet
Overlap geneBnip1, Nkx2-5, Kifc1
Upstream geneNarfl, Haghl, Ccdc78, BC008155, Metrn, Fbxl16, Wdr24, 2610003J06Rik, Stub1, Rhbdl1, Rhot2, Wdr90, 9530058B02Rik, 0610011F06Rik, Wfikkn1, Rab40c, LOC100043160, Pigq, F430201B04Rik, D630044L22Rik, Solh, 1700022N22Rik, Rab11fip3, Decr2, Nme4, EG666609, Tmem8, Mrpl28, Axin1, Pdia2, Arhgdig, Rgs11, Itfg3, LOC100042643, Luc7l, EG383229, EG240055, C230078M08Rik, Dusp1, EG666668, Ergic1, Atp6v0e, A930001N09Rik
Downstream genePhf1, Cuta, Syngap1, Zbtb9, Bak1, Ggnbp1, Itpr3, 2900010M23Rik, Ihpk3, Lemd2, LOC100042713, ENSMUSG00000073430, Grm4, LOC677010, Hmga1, AI413582, Nudt3, Rps10, Pacsin1, Spdef, LOC100042744, D17Wsu92e, EG666682, Snrpc, F830021D11Rik, Taf11, Anks1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-210B12.bB6Ng01-210B12.g
ACCGA028526GA028527
length715135
definitionB6Ng01-210B12.b B6Ng01-210B12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,914,767 - 26,915,479)(27,054,394 - 27,054,528)
sequence
gaattcctttgttcttttttggggggtgggggatcatgtggtctgtgtaa
cagttctggctgtccgtccttcaatttgctttgttgaccaagctggcctc
agactcacagagatctgcctgcttctgcctcccaagtgctgggattaaag
gcatgtaccacaatacattttaactggtgaattcttaagcaacagtgcga
tgaagaatttgaaagaaaaatattgagaagttctgtcccaattcagctga
aagatttagaattagaaggtagtagacgtccttacatatggaggtggcac
ccctaaaccttgctagttgtcttaataagagcctcagctactatcaggcc
cagtgagggtggtggccttgtcccttctacagaagagtcgacagcactca
gatgataggacaagccctatatccaggcaagggtaatacagttcagttca
tactctaatctgcctgaggcgttctgaggataattcatatttacctcagg
tttgccaggccagtatttgaaagaatgcccatgcagaggaaagcaagctg
tttaaaatgtgaaagtcaaagatctgaagctagtcagtgtagaggagttc
agagacagatactgaacaaaaggagcaagattagaagggattcagggctg
gtgcagggggtatgtgactgctcctttcaagacagcctcccagcttaggg
ttgtcttactggaac
aatgggaaatgctggagggggataagggacacgggatggtagcgcctgca
cgactggaatggcggaccaacgtcgcagcgactgtcctgggacctcgccg
tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_26914767_26915479
seq2: B6Ng01-210B12.b_45_759

seq1  GAATTCCTTTGTTCTTTTTTGGGGGGTGGGGGATCAGGTTCTCTGTGTAA  50
      |||||||||||||||||||||||||||||||||||| ||  |||||||||
seq2  GAATTCCTTTGTTCTTTTTTGGGGGGTGGGGGATCATGTGGTCTGTGTAA  50

seq1  CAGTTCTGGCTGTCCGTCCTTCAATTTGCTTTGTTGACCAAGCTGGCCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCTGGCTGTCCGTCCTTCAATTTGCTTTGTTGACCAAGCTGGCCTC  100

seq1  AGACTCACAGAGATCTGCCTGCTTCTGCCTCCCAAGTGCTGGGATTAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCACAGAGATCTGCCTGCTTCTGCCTCCCAAGTGCTGGGATTAAAG  150

seq1  GCATGTACCACAATACATTTTAACTGGTGAATTCTTAAGCAACAGTGCGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTACCACAATACATTTTAACTGGTGAATTCTTAAGCAACAGTGCGA  200

seq1  TGAAGAATTTGAAAGAAAAATATTGAGAAGTTCTGTCCCAATTCAGCTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAATTTGAAAGAAAAATATTGAGAAGTTCTGTCCCAATTCAGCTGA  250

seq1  AAGATTTAGAATTAGAAGGTAGTAGACGTCCTTACATATGGAGGTGGCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTTAGAATTAGAAGGTAGTAGACGTCCTTACATATGGAGGTGGCAC  300

seq1  CCCTAAACCTTGCTAGTTGTCTTAATAAGAGCCTCAGCTACTATCAGGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAAACCTTGCTAGTTGTCTTAATAAGAGCCTCAGCTACTATCAGGCC  350

seq1  CAGTGAGGGTGGTGGCCTTGTCCCTTCTACAGAAGAGTCGACAGCACTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAGGGTGGTGGCCTTGTCCCTTCTACAGAAGAGTCGACAGCACTCA  400

seq1  GATGATAGGACAAGCCCTATATCCAGGCAAGGGTAATACAGTTCAGTTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATAGGACAAGCCCTATATCCAGGCAAGGGTAATACAGTTCAGTTCA  450

seq1  TACTCTAATCTGCCTGAGGCGTTCTGAGGATAATTCATATTTACCTCAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTAATCTGCCTGAGGCGTTCTGAGGATAATTCATATTTACCTCAGG  500

seq1  TTTGCCAGGCCAGTATTTGAAAGAATGCCCATGCAGAGGAAAGCAAGCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCAGGCCAGTATTTGAAAGAATGCCCATGCAGAGGAAAGCAAGCTG  550

seq1  TTTAAAATGTGAAAGTCAAAGATCTGAAGCTAGTCAGTGTAGAGGAGTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAATGTGAAAGTCAAAGATCTGAAGCTAGTCAGTGTAGAGGAGTTC  600

seq1  AGAGACAGATACTGAACAAAAGGAGCAAGATTAGAAGGGATTCAGGGCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACAGATACTGAACAAAAGGAGCAAGATTAGAAGGGATTCAGGGCTG  650

seq1  GTGCAGGGGGTATGTGACTGCTCC-TTCAAGACAGCCT-CCAGCTTAGGG  698
      |||||||||||||||||||||||| ||||||||||||| |||||||||||
seq2  GTGCAGGGGGTATGTGACTGCTCCTTTCAAGACAGCCTCCCAGCTTAGGG  700

seq1  TTGTCTTACTGGAAC  713
      |||||||||||||||
seq2  TTGTCTTACTGGAAC  715

seq1: chr17_27054394_27054528
seq2: B6Ng01-210B12.g_71_205 (reverse)

seq1  ACACACACACACACACACACACACACACACACACACGGCGAGGTCCCAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACACACACGGCGAGGTCCCAGG  50

seq1  ACAGTCGCTGCGACGTTGGTCCGCCATTCCAGTCGTGCAGGCGCTACCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCGCTGCGACGTTGGTCCGCCATTCCAGTCGTGCAGGCGCTACCAT  100

seq1  CCCGTGTCCCTTATCCCCCTCCAGCATTTCCCATT  135
      |||||||||||||||||||||||||||||||||||
seq2  CCCGTGTCCCTTATCCCCCTCCAGCATTTCCCATT  135