BAC Information

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BAC

Clone NameB6Ng01-210K24
Chromosome17 (Build37)
Map Location 51,848,541 - 51,849,655
singlet/doubletsinglet
Overlap genenone
Upstream geneTbc1d5, LOC100043451, LOC100043452
Downstream geneSatb1, EG628919, LOC672987, EG328839
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-210K24.bB6Ng01-210K24.g
ACCGA028961GA028962
length6291,136
definitionB6Ng01-210K24.b B6Ng01-210K24.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctctctctctctctctctctctctctctctctgtgtgtgtgtgtg
tgtgtgtgtgtgtgtgtgtgtgtgtttcactggaaatgaaaacaactgcc
taatgcatgagagggaagaaccccaaacttgagtattgtccaaccttacg
aggtcatgccttcataggtaaataatgattcctaaagtaataacaactga
ccctgaacaaatacccactggcccttgacaatgtgaagcatcaagggaga
taaactagcgtacccctcaagaacctccccctgtccaaggccccagatcg
ggaattaacctcatgctcttcctccaggaagcctgaaaccggagaccact
cccctccctggtctgacaagaaactaacaccctcccgagctcaatatacc
gagaatcgacagtccccgtgccccacaacattaaaatgaaaaactggaca
tccactctgttttggtgacctctattgcgaccaagataggacaatcaaga
tccactgttttattatttaaaatttgaccaagcttaatcttcaaatttac
ctatagcagcgtcgcttatgtgccctctacctttctttaatttatagcta
tttctatctgtactaaacatcatctagtt
gaattctctggcgttagtgttacctgtcattttgtaatgaactgagatag
ggtggcagtgaggttgctgagagtggagtcacaaaatgcagagaggtgtg
aagtcccccagtagagtgaatgtccttcatgaacttgcccagctctagtg
atgtgctaaggactgtgtagttcctttcctgtgaagtcctgtggagctct
gggcagacacatcttctccagctgctagatgtcagagtgtgtcatagaca
gaaagcaagagtccttctccctctctttagataccctaaggcctgggagg
tagaaagttaaaaacaaactccccaccatgagccgtaatggctggagcaa
aattctggacttactgtttgagacaggctttcatcctgaaagttgtttgg
ccttaaacttactctgcagcccagggtaacaattctactacctcagcctt
ccaaaaggtgagattaaggtccaacatcaccatgcctagcaagtatgacg
tcttgactgacagctcccagaacaaagcacatgtgttggagaaggaacca
tgactgtctgtcatatccagcccggcttgttggcatgtgctagaacatcc
acacaaaacatttttaattttttaaaatttattttaacttcattgtctat
gagtattttgcctacatgtatgtgtgtgtaccacatgcatgtccggtacc
cacaaaaaaaggaggggcagcagatcttttagaattggagttaagaacag
ttataaactgccatgtaagtctgagaccaaagccctggtcctctgtaaga
atagccagtgtttttaaacactcagccatctttctcagctgttctcctct
tcagaatataaacacgtgtatatggttttatgtattttttctatattaaa
aataaccctagaaaatccaaatgggaagggagttacaggagacaaagttt
ggagctgaagacaaaaggatgggaccggtctaggtgactgccaatatccg
ggagatccattccataattcagcttccaaacgctggacacattggcatac
acttagcaagaattttgctgatagggaccctgatataagctgtctctaat
ggagaactaccgccgggggccttagcaacaacataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_51848541_51849655
seq2: B6Ng01-210K24.g_65_1200

seq1  GAATTCTCTGGCGTTAGTGTTACCTGTCATTTTGTAATGAACTGAGATAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGGCGTTAGTGTTACCTGTCATTTTGTAATGAACTGAGATAG  50

seq1  GGTGGCAGTGAGGTTGCTGAGAGTGGAGTCACAAAATGCAGAGAGGTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCAGTGAGGTTGCTGAGAGTGGAGTCACAAAATGCAGAGAGGTGTG  100

seq1  AAGTCCCCCAGTAGAGTGAATGTCCTTCATGAACTTGCCCAGCTCTAGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCCCCAGTAGAGTGAATGTCCTTCATGAACTTGCCCAGCTCTAGTG  150

seq1  ATGTGCTAAGGACTGTGTAGTTCCTTTCCTGTGAAGTCCTGTGGAGCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCTAAGGACTGTGTAGTTCCTTTCCTGTGAAGTCCTGTGGAGCTCT  200

seq1  GGGCAGACACATCTTCTCCAGCTGCTAGATGTCAGAGTGTGTCATAGACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGACACATCTTCTCCAGCTGCTAGATGTCAGAGTGTGTCATAGACA  250

seq1  GAAAGCAAGAGTCCTTCTCCCTCTCTTTAGATACCCTAAGGCCTGGGAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCAAGAGTCCTTCTCCCTCTCTTTAGATACCCTAAGGCCTGGGAGG  300

seq1  TAGAAAGTTAAAAACAAACTCCCCACCATGAGCCGTAATGGCTGGAGCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAGTTAAAAACAAACTCCCCACCATGAGCCGTAATGGCTGGAGCAA  350

seq1  AATTCTGGACTTACTGTTTGAGACAGGCTTTCATCCTGAAAGTTGTTTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTGGACTTACTGTTTGAGACAGGCTTTCATCCTGAAAGTTGTTTGG  400

seq1  CCTTAAACTTACTCTGCAGCCCAGGGTAACAATTCTACTACCTCAGCCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAAACTTACTCTGCAGCCCAGGGTAACAATTCTACTACCTCAGCCTT  450

seq1  CCAAAAGGTGAGATTAAGGTCCAACATCACCATGCCTAGCAAGTATGACG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAGGTGAGATTAAGGTCCAACATCACCATGCCTAGCAAGTATGACG  500

seq1  TCTTGACTGACAGCTCCCAGAACAAAGCACATGTGTTGGAGAAGGAACCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGACTGACAGCTCCCAGAACAAAGCACATGTGTTGGAGAAGGAACCA  550

seq1  TGACTGTCTGTCATATCCAGCCCGGCTTGTTGGCATGTGCTAGAACATCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGTCTGTCATATCCAGCCCGGCTTGTTGGCATGTGCTAGAACATCC  600

seq1  ACACAAAACATTTTTAATTTTTTAAAATTTATTTTAACTTCATTGTCTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAAACATTTTTAATTTTTTAAAATTTATTTTAACTTCATTGTCTAT  650

seq1  GAGTATTTTGCCTACATGTATGTGTGTGTACCACATGCATGTCCGGTACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTATTTTGCCTACATGTATGTGTGTGTACCACATGCATGTCCGGTACC  700

seq1  CACAAAAAAAGGAGGGGCAGCAGATCTTTTAGAATTGGAGTTAAGAACAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAAAAAGGAGGGGCAGCAGATCTTTTAGAATTGGAGTTAAGAACAG  750

seq1  TTATAAACTGCCATGTAAGTCTGAGACCAAAGCCCTGGTCCTCTGTAAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAACTGCCATGTAAGTCTGAGACCAAAGCCCTGGTCCTCTGTAAGA  800

seq1  ATAGCCAGTGTTTTTAAACACTCAGCCATCTTTCTCAGCTGTTCTCCTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCCAGTGTTTTTAAACACTCAGCCATCTTTCTCAGCTGTTCTCCTCT  850

seq1  TCAGAATATAAACACGTGTATATGGTTTTATGTA-TTTTTCTATATTAAA  899
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TCAGAATATAAACACGTGTATATGGTTTTATGTATTTTTTCTATATTAAA  900

seq1  AATAACCCTAGAAAATCCAAATGG--AAGGAGTTACA-GAGACAAAGTTT  946
      ||||||||||||||||||||||||  | ||||||||| ||||||||||||
seq2  AATAACCCTAGAAAATCCAAATGGGAAGGGAGTTACAGGAGACAAAGTTT  950

seq1  GGAGCTG-AGACAAAAGGAT-GGACC-GTCTA-GTGACTGCC-ATATCC-  990
      ||||||| |||||||||||| ||||| ||||| ||||||||| |||||| 
seq2  GGAGCTGAAGACAAAAGGATGGGACCGGTCTAGGTGACTGCCAATATCCG  1000

seq1  GGAGATCCATCCCATAA-TCAGCCTCCAAACGCT-GACACCATTGCATAC  1038
      |||||||||| |||||| ||||| |||||||||| |||||  | ||||||
seq2  GGAGATCCATTCCATAATTCAGCTTCCAAACGCTGGACACATTGGCATAC  1050

seq1  AC-TAGCAAG-ATTTTGCTGATA-GGACCCTGATAT-AGCTGTCTCTAAT  1084
      || ||||||| |||||||||||| |||||||||||| |||||||||||||
seq2  ACTTAGCAAGAATTTTGCTGATAGGGACCCTGATATAAGCTGTCTCTAAT  1100

seq1  -GAG-ACTA-CGCCGGGG--CCTAGCAAACACATAA  1115
       ||| |||| ||||||||  | ||||||  ||||||
seq2  GGAGAACTACCGCCGGGGGCCTTAGCAACAACATAA  1136