BAC Information

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BAC

Clone NameB6Ng01-211E21
Chromosome17 (Build37)
Map Location 80,572,625 - 80,675,896
singlet/doubletdoublet
Overlap geneGalm, Sfrs7, 4930560E09Rik, Gemin6, Dhx57
Upstream geneLOC383277, Cdc42ep3, LOC639964, AW061290, Cyp1b1, EG668821, Arl6ip2, LOC625074, Hnrpll, Gpx4-ps
Downstream geneMorn2, Sos1, Cdkl4, F420015M19Rik, Map4k3, LOC100043697, C230072F16Rik, LOC675572, EG668830, Tmem178, Thumpd2, LOC100043700, LOC100043704
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-211E21.bB6Ng01-211E21.g
ACCGA029407GA029408
length1,2041,022
definitionB6Ng01-211E21.b B6Ng01-211E21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,674,717 - 80,675,896)(80,572,625 - 80,573,631)
sequence
gaattctttgatgaaattactgagtggccagtcagggatagcaaatattc
ttctgtcctctacaagtcatttgtctcagtcttagaagaggggaaaggga
caggggtagtatctctgactaagagatggcttctgtggataagaaggcag
gctctggacttaggctaggataagcaccttcttgctgctttccgtgtaac
cttagtcactaatcctctctgaggctcaactgatcatttgaaaaataggg
atttcagtaatatatagcagggctattgagacgctaaaaagagtttgttt
ctataaatgactttacctaggacctgagtgacatgtaggtccctaaagaa
atgtcatttcccaagacagaaactaacagttcactataagatgaaaccag
caactgaagggcagggtcccaagtcgttggctctttgattaaatgcttac
acccttgcttaatttttctctgaaataagtagacattaacatccaatatt
ttaaaatgtccccttccctagaagaggcacctctggggaggaggaagaca
gcgagccccagtgtggcgaggagcagggctggccagctggacaagagcct
atctttcttcctgactgcagtccttgggaatatataggcccagaagaagt
ggagcctcctgtgccagaatgtgcagtctcacccttggcagtgcagaaac
tttccaggtgatcactttatcacttacagaagtctcttctctgtggatgc
cctatcatgacagtgcccgtagggcccaatatgctgacaactcgatcttt
taaaatggagggattattattatctgggatgctttttccaaatacagaat
gtagctgtccacagttgtaactccatatttgtatttaagtgactctcacg
tcagtgatgtgaagacttttacacagcatctttgtcatgttttgccctcg
gcaggtacggcttccacactgagcactgtcagctggccctgaggatctgt
gatggagacttaggggcggcactagagcatctttctccgccagtgttttc
tcaagaagacgtttgggagaagagggatgggcgcctctcctgaagcagcc
tggtttattgtgagccttggaatgagtgtggtgtggagccaagacaggga
gaagacgccttgctctctccaagttccaatctgcgggaaaaaatcataga
aaga
gaattctggggattaactcaggtccttgagcgcttacgtgatcaccccag
taccgtccaaaagtaacctcaaggatccatgctcctgatattcgctctct
cgaaggcacttaaaaacagtgtacagaggggaagatggagggagagaggc
ctccacagagacttgtcagtcagtgctgagagacaaaaaacatcctggag
cgattactggagctattgctacataacaaaccatcccaacacagtcattt
attgtctgtttctgttaggacgaatgttaaaaacaaattctggtttttct
tcccagtcttgctcccagaatgacgactctgagactaattatttattatt
taatggctaggccataagctttggctcattctctgactagctcataactt
acttaacccattcaaattttcctgtgtaccacatggttagttacctctct
tcagtcctggcctcctcctctctctcagcatctccctgagttcatttacc
ttctggtttatgtccatctcttcagtccctctctcttctttctgcatctc
cttttattttctctctcctcctgccagggtcccacctcctatttcctgcc
tcagctcattggccatcagcttttttattggcaggcaatgcttataagac
attttctttacagacaagtcattctcttgggcctccagcaaagatcagga
ctggcacataaacatctaaagatgtttcttcagtgtttggctgttggtgt
cggtttttggttgggagctcagttgaggctgtcaccgtaactgcacacca
cacacacacacacacacacacacacacacacacacacacacagccttgtg
acttgatctttcctaattgtatggtggctgggcttcaagaagctccatgt
cttgaagagcagcctaaggcctgaagcaattttatatcttccataccggt
gtcctcaggagtcacacaccccagcagcctctattgaaggtggttattca
aggtgcatgtaagcctcaaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_80674717_80675896
seq2: B6Ng01-211E21.b_47_1250 (reverse)

seq1  TCTTTCTATGAATTTTTCTCCGCAGAT--GGACTT---GAGAGCAA-GCG  44
      ||||||||||| |||||| ||||||||  | ||||   |||||||| |||
seq2  TCTTTCTATGATTTTTTC-CCGCAGATTGGAACTTGGAGAGAGCAAGGCG  49

seq1  TC-TCTTCCTGTCTCTGCTCCA---CACACTCATTC--AAGCTCAC-ATA  87
      || ||| |||||||  ||||||   |||||||||||  | |||||| |||
seq2  TCTTCTCCCTGTCTTGGCTCCACACCACACTCATTCCAAGGCTCACAATA  99

seq1  AAC--AGCTGCCTCA-GAGA-GCG-CCATCCTCTCT----CCAAACGTCT  128
      |||   ||||| ||| |||| ||| |||||| ||||    ||||||||||
seq2  AACCAGGCTGCTTCAGGAGAGGCGCCCATCC-CTCTTCTCCCAAACGTCT  148

seq1  --CTGAG-AAACACTGGCGGAG-AAGATGCTCTAGTGCCGCCCCTAAGTC  174
         |||| |||||||||||||| |||||||||||||||||||||||||||
seq2  TCTTGAGAAAACACTGGCGGAGAAAGATGCTCTAGTGCCGCCCCTAAGTC  198

seq1  TCCATCACAGATCCTCAGGGCCAGCTGACAGTGCTCAGTGTGGAAGCCGT  224
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCACAGATCCTCAGGGCCAGCTGACAGTGCTCAGTGTGGAAGCCGT  248

seq1  ACCTGCCGAGGGCAAAACATGACAAAGATGCTGTGTAAAAGTCTTCACAT  274
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCCGAGGGCAAAACATGACAAAGATGCTGTGTAAAAGTCTTCACAT  298

seq1  CACTGACGTGAGAGTCACTTAAATACAAATATGGAGTTACAACTGTGGAC  324
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGACGTGAGAGTCACTTAAATACAAATATGGAGTTACAACTGTGGAC  348

seq1  AGCTACATTCTGTATTTGGAAAAAGCATCCCAGATAATAATAATCCCTCC  374
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTACATTCTGTATTTGGAAAAAGCATCCCAGATAATAATAATCCCTCC  398

seq1  ATTTTAAAAGATCGAGTTGTCAGCATATTGGGCCCTACGGGCACTGTCAT  424
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAAAGATCGAGTTGTCAGCATATTGGGCCCTACGGGCACTGTCAT  448

seq1  GATAGGGCATCCACAGAGAAGAGACTTCTGTAAGTGATAAAGTGATCACC  474
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGGGCATCCACAGAGAAGAGACTTCTGTAAGTGATAAAGTGATCACC  498

seq1  TGGAAAGTTTCTGCACTGCCAAGGGTGAGACTGCACATTCTGGCACAGGA  524
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAGTTTCTGCACTGCCAAGGGTGAGACTGCACATTCTGGCACAGGA  548

seq1  GGCTCCACTTCTTCTGGGCCTATATATTCCCAAGGACTGCAGTCAGGAAG  574
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCACTTCTTCTGGGCCTATATATTCCCAAGGACTGCAGTCAGGAAG  598

seq1  AAAGATAGGCTCTTGTCCAGCTGGCCAGCCCTGCTCCTCGCCACACTGGG  624
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATAGGCTCTTGTCCAGCTGGCCAGCCCTGCTCCTCGCCACACTGGG  648

seq1  GCTCGCTGTCTTCCTCCTCCCCAGAGGTGCCTCTTCTAGGGAAGGGGACA  674
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCGCTGTCTTCCTCCTCCCCAGAGGTGCCTCTTCTAGGGAAGGGGACA  698

seq1  TTTTAAAATATTGGATGTTAATGTCTACTTATTTCAGAGAAAAATTAAGC  724
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAATATTGGATGTTAATGTCTACTTATTTCAGAGAAAAATTAAGC  748

seq1  AAGGGTGTAAGCATTTAATCAAAGAGCCAACGACTTGGGACCCTGCCCTT  774
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTGTAAGCATTTAATCAAAGAGCCAACGACTTGGGACCCTGCCCTT  798

seq1  CAGTTGCTGGTTTCATCTTATAGTGAACTGTTAGTTTCTGTCTTGGGAAA  824
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGCTGGTTTCATCTTATAGTGAACTGTTAGTTTCTGTCTTGGGAAA  848

seq1  TGACATTTCTTTAGGGACCTACATGTCACTCAGGTCCTAGGTAAAGTCAT  874
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATTTCTTTAGGGACCTACATGTCACTCAGGTCCTAGGTAAAGTCAT  898

seq1  TTATAGAAACAAACTCTTTTTAGCGTCTCAATAGCCCTGCTATATATTAC  924
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGAAACAAACTCTTTTTAGCGTCTCAATAGCCCTGCTATATATTAC  948

seq1  TGAAATCCCTATTTTTCAAATGATCAGTTGAGCCTCAGAGAGGATTAGTG  974
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATCCCTATTTTTCAAATGATCAGTTGAGCCTCAGAGAGGATTAGTG  998

seq1  ACTAAGGTTACACGGAAAGCAGCAAGAAGGTGCTTATCCTAGCCTAAGTC  1024
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGGTTACACGGAAAGCAGCAAGAAGGTGCTTATCCTAGCCTAAGTC  1048

seq1  CAGAGCCTGCCTTCTTATCCACAGAAGCCATCTCTTAGTCAGAGATACTA  1074
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCCTGCCTTCTTATCCACAGAAGCCATCTCTTAGTCAGAGATACTA  1098

seq1  CCCCTGTCCCTTTCCCCTCTTCTAAGACTGAGACAAATGACTTGTAGAGG  1124
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGTCCCTTTCCCCTCTTCTAAGACTGAGACAAATGACTTGTAGAGG  1148

seq1  ACAGAAGAATATTTGCTATCCCTGACTGGCCACTCAGTAATTTCATCAAA  1174
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAGAATATTTGCTATCCCTGACTGGCCACTCAGTAATTTCATCAAA  1198

seq1  GAATTC  1180
      ||||||
seq2  GAATTC  1204

seq1: chr17_80572625_80573631
seq2: B6Ng01-211E21.g_68_1089

seq1  GAATTCTGGGGATTAACTCAGGTCCTTGAGCGCTTACGTGATCACCCCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGGGATTAACTCAGGTCCTTGAGCGCTTACGTGATCACCCCAG  50

seq1  TACCGTCCAAAAGTAACCTCAAGGATCCATGCTCCTGATATTCGCTCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCGTCCAAAAGTAACCTCAAGGATCCATGCTCCTGATATTCGCTCTCT  100

seq1  CGAAGGCACTTAAAAACAGTGTACAGAGGGGAAGATGGAGGGAGAGAGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAGGCACTTAAAAACAGTGTACAGAGGGGAAGATGGAGGGAGAGAGGC  150

seq1  CTCCACAGAGACTTGTCAGTCAGTGCTGAGAGACAAAAAACATCCTGGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACAGAGACTTGTCAGTCAGTGCTGAGAGACAAAAAACATCCTGGAG  200

seq1  CGATTACTGGAGCTATTGCTACATAACAAACCATCCCAACACAGTCATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATTACTGGAGCTATTGCTACATAACAAACCATCCCAACACAGTCATTT  250

seq1  ATTGTCTGTTTCTGTTAGGACGAATGTTAAAAACAAATTCTGGTTTTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCTGTTTCTGTTAGGACGAATGTTAAAAACAAATTCTGGTTTTTCT  300

seq1  TCCCAGTCTTGCTCCCAGAATGACGACTCTGAGACTAATTATTTATTATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGTCTTGCTCCCAGAATGACGACTCTGAGACTAATTATTTATTATT  350

seq1  TAATGGCTAGGCCATAAGCTTTGGCTCATTCTCTGACTAGCTCATAACTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGCTAGGCCATAAGCTTTGGCTCATTCTCTGACTAGCTCATAACTT  400

seq1  ACTTAACCCATTCAAATTTTCCTGTGTACCACATGGTTAGTTACCTCTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAACCCATTCAAATTTTCCTGTGTACCACATGGTTAGTTACCTCTCT  450

seq1  TCAGTCCTGGCCTCCTCCTCTCTCTCAGCATCTCCCTGAGTTCATTTACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCCTGGCCTCCTCCTCTCTCTCAGCATCTCCCTGAGTTCATTTACC  500

seq1  TTCTGGTTTATGTCCATCTCTTCAGTCCCTCTCTCTTCTTTCTGCATCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGTTTATGTCCATCTCTTCAGTCCCTCTCTCTTCTTTCTGCATCTC  550

seq1  CTTTTATTTTCTCTCTCCTCCTGCCAGGGTCCCACCTCCTATTTCCTGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTATTTTCTCTCTCCTCCTGCCAGGGTCCCACCTCCTATTTCCTGCC  600

seq1  TCAGCTCATTGGCCATCAGCTTTTTTATTGGCAGGCAATGCTTATAAGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTCATTGGCCATCAGCTTTTTTATTGGCAGGCAATGCTTATAAGAC  650

seq1  ATTTTCTTTACAGACAAGTCATTCTCTTGGGCCTCCAGCAAAGATCAGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTTTACAGACAAGTCATTCTCTTGGGCCTCCAGCAAAGATCAGGA  700

seq1  CTGGCACATAAACATCTAAAGATGTTTCTTCAGTGTTTGGCTGTTGGTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCACATAAACATCTAAAGATGTTTCTTCAGTGTTTGGCTGTTGGTGT  750

seq1  CGGTTTTTGGTTGGGAGCTCAGTTGAGGCTGTCACCGTAACTGCACACCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTTTTTGGTTGGGAGCTCAGTTGAGGCTGTCACCGTAACTGCACACCA  800

seq1  CACACACACACACACACACACACACACACACACACACACACAGCCTTGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACACACACACAGCCTTGTG  850

seq1  ACTTGATC-TTCCTAATTGTATGGTGGCTGGGCTTCAAG-AGCT-CATGT  897
      |||||||| |||||||||||||||||||||||||||||| |||| |||||
seq2  ACTTGATCTTTCCTAATTGTATGGTGGCTGGGCTTCAAGAAGCTCCATGT  900

seq1  CTTG-AGAGCAGCCTA--GGCTGAAGCCATTTTATATCT--CATACCGGT  942
      |||| |||||||||||  | ||||||| |||||||||||  |||||||||
seq2  CTTGAAGAGCAGCCTAAGGCCTGAAGCAATTTTATATCTTCCATACCGGT  950

seq1  GT-CTCAGGAGT--CACACCCCAGCAG-CTCTATTG-AGGTGGTTA-TCA  986
      || |||||||||  ||||||||||||| |||||||| ||||||||| |||
seq2  GTCCTCAGGAGTCACACACCCCAGCAGCCTCTATTGAAGGTGGTTATTCA  1000

seq1  AGGTGCATGTAAG-CTCAAAGA  1007
      ||||||||||||| ||||||||
seq2  AGGTGCATGTAAGCCTCAAAGA  1022