BAC Information

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BAC

Clone NameB6Ng01-211K01
Chromosome17 (Build37)
Map Location 45,915,432 - 46,071,811
singlet/doubletdoublet
Overlap genenone
Upstream geneRunx2, Supt3h, 4930564C03Rik, EG210562, EG668314, Cdc5l, Spats1, EG668319, Aars2, Tcte1, Gm323, Nfkbie, Slc35b2, Hsp90ab1, Slc29a1, EG653016, Capn11, Tmem63b, Mrpl14, LOC100043363
Downstream geneVegfa, Mrps18a, 1700027N10Rik, Mad2l1bp, Gtpbp2, Polh, Xpo5, Rpo1-1, Yipf3, Gm88, Tjap1, Egfl9, Abcc10, BC040756, Zfp318, LOC677168, Crip3, Slc22a7, EG328825, Ttbk1, BC048355, Parc, Srf, Ptk7, Klc4, Mrpl2, Cul7, BC011248, Klhdc3, Mea1, Ppp2r5d, Pex6, Gnmt, Tnrc5, Ptcra, 2310039H08Rik, Rpl7l1, BC032203, A330017A19Rik, Tbcc, Prph2, Ubr2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-211K01.bB6Ng01-211K01.g
ACCGA029644GA029645
length1,019634
definitionB6Ng01-211K01.b B6Ng01-211K01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,070,801 - 46,071,811)(45,915,432 - 45,916,065)
sequence
gaattctgggatcttgaacaccttcctgctccttaaaagtctgatcagac
gtttgtgaaactgagattgccgagctccgattacgatggggacacccctg
ttcatcagttctcctgaagtccggaagactcatcctcgctgccacttgga
gccagctcagctttcccttgggagaaccactgggttcccttctagtttca
tttctgttggtgtgataaaataccttgacaaaaagcaacacacacacaca
cacacacacacacactgacttacacacaggtaaacataacgttgacaatc
catcactgacactcttcccagatgattctagattgtatcaagttgacaaa
gctaatactcacaggtccccaaactcctacctcattagcaggaaggagaa
gtttggaggatggggaacagtgaatgccctcaaacatcaaccaaagggcc
aggtgagtggctgggccacccggcttgctcacaatctgtgccctctagag
gtcaggggtcaggggtcaggtaggttcttttccaggaaggctccctttgc
ctctgggtagaggaatggctcttcatacaggccccaagcaggcacttggg
caaggctgcagattaactcgaaaggaggcccaggcagggataaaagggga
tgtgggcctctgtgagaagccagggtgttaattcccctgctttcagtggg
ccttactaattcagatcccaaggggctttgctgggtttgtcctgggccta
gccatttaatcttataatacctcccagcaaggcccctttgtttctctctc
ttgcataaggtggtaggaactggggcagttcccccagaccctttccttat
gaccctactgcagctctacttggtggctgccaaggcaccttcaatccctt
gagcccctaatggactttccaggggaatatgtaaggcagccagctgctat
aagaatacatttctgggaatgcctttcaggggcttgctttgcaacccttg
ttagcaagcagtagaaggg
gtgtgtttccttcctttctctctctctctctctgtgttatgcatttttgt
atacatgtctgttgggcatttctctagttgccttcacaagaaaaggaaaa
cacaaacaaaacactaaaagttctcacactaggtggaaggttgccaagtt
gactaacagtgctggaatgcccttcagaatgtgttagcgttctttctggt
ggcattatgggagacggcccacgtagccagatcctccacagcgctgggtg
ttcctgactttcctaatcattgttgggttgataaatgaaaacttacactt
ggctgaaagttgcatttcaaatcattaatgagatgggacattatgtatta
atcttttaaaagctttacttattttattctatctgtgtgagtgttttgcc
tgtgtgtattcatgtgtactacgagtgtgcctggtagcccaagaggtaag
aagaggatggatctcctggaaccggagttaaggacagtttgaaaccacta
atgtggtgctgtgaacggaacccaagtcctcagtgagagtaacaagttcc
cttaaccacagagccatctctccagcccctagatattatatttttatttg
ctaggtgtgtgtgtgtgtgtgtatgagagagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_46070801_46071811
seq2: B6Ng01-211K01.b_49_1067 (reverse)

seq1  CCCTTCTACTGCTTGCTA--CAGGGTTGCAAAGCAAGCCCCCTGAAAGGC  48
      ||||||||||||||||||   |||||||||||||||| ||||||||||||
seq2  CCCTTCTACTGCTTGCTAACAAGGGTTGCAAAGCAAG-CCCCTGAAAGGC  49

seq1  ATTTCCAGAAATGTA-TCTATTAGCAGCTGGCTGCCTTACATATTCCCCT  97
      ||| ||||||||||| |||  |||||||||||||||||||||||||||||
seq2  ATTCCCAGAAATGTATTCTTATAGCAGCTGGCTGCCTTACATATTCCCCT  99

seq1  GGAAAGTCC-TTAGGGGCTC-AGGGATTGAAGGTGCCTTGGCAGCCACC-  144
      ||||||||| |||||||||| |||||||||||||||||||||||||||| 
seq2  GGAAAGTCCATTAGGGGCTCAAGGGATTGAAGGTGCCTTGGCAGCCACCA  149

seq1  AGTAGAGGCTGCAGTAGGGTCATAAGG-AAGGGTCTGGGGGAACTG-CCC  192
      |||||| |||||||||||||||||||| |||||||||||||||||| |||
seq2  AGTAGA-GCTGCAGTAGGGTCATAAGGAAAGGGTCTGGGGGAACTGCCCC  198

seq1  AGTTCCTACCACCTTATGCAAGAGAGAG-AACAAAGGGGCCTTGCTGGGA  241
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AGTTCCTACCACCTTATGCAAGAGAGAGAAACAAAGGGGCCTTGCTGGGA  248

seq1  GGTATTATAAGATTAAATGGCTAGGCCCAGGACAAACCCAGC-AAGCCCC  290
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GGTATTATAAGATTAAATGGCTAGGCCCAGGACAAACCCAGCAAAGCCCC  298

seq1  TTGGGATCTGAATTAGTAAGGCCCACTGAAAGCAGGGGAATTAACACCCT  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGATCTGAATTAGTAAGGCCCACTGAAAGCAGGGGAATTAACACCCT  348

seq1  GGCTTCTCACAGAGGCCCACATCCCCTTTTATCCCTGCCTGGGCCTCCTT  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCTCACAGAGGCCCACATCCCCTTTTATCCCTGCCTGGGCCTCCTT  398

seq1  TCGAGTTAATCTGCAGCCTTGCCCAAGTGCCTGCTTGGGGCCTGTATGAA  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAGTTAATCTGCAGCCTTGCCCAAGTGCCTGCTTGGGGCCTGTATGAA  448

seq1  GAGCCATTCCTCTACCCAGAGGCAAAGGGAGCCTTCCTGGAAAAGAACCT  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCATTCCTCTACCCAGAGGCAAAGGGAGCCTTCCTGGAAAAGAACCT  498

seq1  ACCTGACCCCTGACCCCTGACCTCTAGAGGGCACAGATTGTGAGCAAGCC  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGACCCCTGACCCCTGACCTCTAGAGGGCACAGATTGTGAGCAAGCC  548

seq1  GGGTGGCCCAGCCACTCACCTGGCCCTTTGGTTGATGTTTGAGGGCATTC  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGCCCAGCCACTCACCTGGCCCTTTGGTTGATGTTTGAGGGCATTC  598

seq1  ACTGTTCCCCATCCTCCAAACTTCTCCTTCCTGCTAATGAGGTAGGAGTT  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTCCCCATCCTCCAAACTTCTCCTTCCTGCTAATGAGGTAGGAGTT  648

seq1  TGGGGACCTGTGAGTATTAGCTTTGTCAACTTGATACAATCTAGAATCAT  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGACCTGTGAGTATTAGCTTTGTCAACTTGATACAATCTAGAATCAT  698

seq1  CTGGGAAGAGTGTCAGTGATGGATTGTCAACGTTATGTTTACCTGTGTGT  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAAGAGTGTCAGTGATGGATTGTCAACGTTATGTTTACCTGTGTGT  748

seq1  AAGTCAGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGCTTTTTGTCAAGGT  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCAGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGCTTTTTGTCAAGGT  798

seq1  ATTTTATCACACCAACAGAAATGAAACTAGAAGGGAACCCAGTGGTTCTC  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATCACACCAACAGAAATGAAACTAGAAGGGAACCCAGTGGTTCTC  848

seq1  CCAAGGGAAAGCTGAGCTGGCTCCAAGTGGCAGCGAGGATGAGTCTTCCG  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGGAAAGCTGAGCTGGCTCCAAGTGGCAGCGAGGATGAGTCTTCCG  898

seq1  GACTTCAGGAGAACTGATGAACAGGGGTGTCCCCATCGTAATCGGAGCTC  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCAGGAGAACTGATGAACAGGGGTGTCCCCATCGTAATCGGAGCTC  948

seq1  GGCAATCTCAGTTTCACAAACGTCTGATCAGACTTTTAAGGAGCAGGAAG  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAATCTCAGTTTCACAAACGTCTGATCAGACTTTTAAGGAGCAGGAAG  998

seq1  GTGTTCAAGATCCCAGAATTC  1011
      |||||||||||||||||||||
seq2  GTGTTCAAGATCCCAGAATTC  1019

seq1: chr17_45915432_45916065
seq2: B6Ng01-211K01.g_79_712

seq1  GTGTGTTTCCTTCCTTTCTCTCTCTCTCTCTCTGTGTTATGCATTTTTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTTTCCTTCCTTTCTCTCTCTCTCTCTCTGTGTTATGCATTTTTGT  50

seq1  ATACATGTCTGTTGGGCATTTCTCTAGTTGCCTTCACAAGAAAAGGAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATGTCTGTTGGGCATTTCTCTAGTTGCCTTCACAAGAAAAGGAAAA  100

seq1  CACAAACAAAACACTAAAAGTTCTCACACTAGGTGGAAGGTTGCCAAGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAACAAAACACTAAAAGTTCTCACACTAGGTGGAAGGTTGCCAAGTT  150

seq1  GACTAACAGTGCTGGAATGCCCTTCAGAATGTGTTAGCGTTCTTTCTGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAACAGTGCTGGAATGCCCTTCAGAATGTGTTAGCGTTCTTTCTGGT  200

seq1  GGCATTATGGGAGACGGCCCACGTAGCCAGATCCTCCACAGCGCTGGGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTATGGGAGACGGCCCACGTAGCCAGATCCTCCACAGCGCTGGGTG  250

seq1  TTCCTGACTTTCCTAATCATTGTTGGGTTGATAAATGAAAACTTACACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGACTTTCCTAATCATTGTTGGGTTGATAAATGAAAACTTACACTT  300

seq1  GGCTGAAAGTTGCATTTCAAATCATTAATGAGATGGGACATTATGTATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGAAAGTTGCATTTCAAATCATTAATGAGATGGGACATTATGTATTA  350

seq1  ATCTTTTAAAAGCTTTACTTATTTTATTCTATCTGTGTGAGTGTTTTGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTTAAAAGCTTTACTTATTTTATTCTATCTGTGTGAGTGTTTTGCC  400

seq1  TGTGTGTATTCATGTGTACTACGAGTGTGCCTGGTAGCCCAAGAGGTAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTATTCATGTGTACTACGAGTGTGCCTGGTAGCCCAAGAGGTAAG  450

seq1  AAGAGGATGGATCTCCTGGAACCGGAGTTAAGGACAGTTTGAAACCACTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGATGGATCTCCTGGAACCGGAGTTAAGGACAGTTTGAAACCACTA  500

seq1  ATGTGGTGCTGTGAACGGAACCCAAGTCCTCAGTGAGAGTAACAAGTTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGTGCTGTGAACGGAACCCAAGTCCTCAGTGAGAGTAACAAGTTCC  550

seq1  CTTAACCACAGAGCCATCTCTCCAGCCCCTAGATATTATATTTTTATTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAACCACAGAGCCATCTCTCCAGCCCCTAGATATTATATTTTTATTTG  600

seq1  CTAGGTGTGTGTGTGTGTGTGTATGAGAGAGAGA  634
      ||||||||||||||||||||||||||||||||||
seq2  CTAGGTGTGTGTGTGTGTGTGTATGAGAGAGAGA  634