BAC Information

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BAC

Clone NameB6Ng01-213A11
Chromosome17 (Build37)
Map Location 50,561,131 - 50,561,959
singlet/doubletsinglet
Overlap genenone
Upstream geneMocs1, Daam2, Kif6, EG668470, Rftn1, EG668475, EG628747, LOC100043818, Dazl
Downstream genePlcl2, EG654432, Tbc1d5, LOC100043451
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-213A11.bB6Ng01-213A11.g
ACCGA030672GA030673
length1,2701,150
definitionB6Ng01-213A11.b B6Ng01-213A11.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctacataatctgctacagcaaacggcgagaggtggaaacatatcc
cagttcaccttacgaaactacaaaaaccggaggcaataaaaatgaaaacc
acacgacaatagccctcataaatatagatgtgaaaatactctacaaaata
ttagcaactataatacagcagtgtataaaagggattatgccttacaacac
tggagctacattttaggagcaagcctagctcagcatttgaaagcaaaatc
tacagtgtaacactttctatcagattttttttttaaatcacaagattata
tcgaccgacgcagaaagcatttcataaagtaatcattttatgattaaaac
ttagaaaaatagaaatgaagtaggacattttcaacttggtaagcatgcac
aaaccctctgccatcgacactgtacttaaggttgaaacacttagttttta
tcctcccgaaatcagaaataaggaaaggatgcctcctctcgcgggtatgc
aagagtactgaagtttcagctaccagagcaaagggatcctaggaggcaaa
ggcatgcagtgaacagaaggcattagagtgtgcttagttgtcggggatgt
aattgactatgcagaagctctctgtgaaactacaaaaataaaatgggcca
aggcagaaaacaagcttgggactcaaccgagttcagcaaggccacgggac
acaaggtaaacgtacactcaaaaaattcattcaatttacatatgccatca
acaaatatagacacctagattgcaacatggtttgtaattgctttaaaaat
gaaatgcttcagtgtagaaataagaaatcttgtcccaggagtgtatgctg
gttaagtatacaacgctgattctcaaaatggcaggtcttcataggtggag
aagcgtgcgtctgaattgtctgaaaaacattacgaagacgttacttctct
tcacttgatcaacaggttcgatgcagtgctaaaaaaaaaccaaacaaaac
aaaaccaaaaacccagtagtatgttcttgcagataccgaacaggataatt
ctaaattattgtggaaagaagaatgatgttaatagttacacacattggaa
gaacatggccggaataggacacatttttttccacctcaagagtgaattcc
ctgaatatgtgaactggtgtggcattattccagggaacaaacctggacag
ttagactcgacttcacgaacttaaatggctcacccatgaattgtgtacac
aagagagtctgcagaacacg
gaattctgttagaacatgggattccctttgactcgccccggttgggacta
caacatggctaaaggtaggtagagcttgaaaacctatcgccaggctctgg
tctctgaggcgcctcaagacggccgactaatttggcttaggtaacataat
gcaagggccaaccgaacctccctcggtgttccttgaaaggcttatggaag
ccttcaggaggttcactccctttgatcctatctcggaagcccagaaggcc
tcgttggccctggccttcataaggcagtctgcctcagatatcagaaagaa
acttcagagatcggaagggttacaggaggctgagttatgtgatctagtga
aagaggcagagaaagcagtggcttacctatccaagaagttagaccctgtt
gccagcaggtggttttcttgcctgaaagctattgctgccatagctctctc
tgcttgtcaagaatgctgataagctcactctgggacagcaaaaatgatct
gaaggatcagccttggcctgggagtccgagctggtacacagatggcagta
gctttgtggttgaaggtaagcagaaggcaggggcagcagtggtggacagg
aagcaagtgatctgggccagcagcctccctgaagggacgtcggcccagaa
agctgaatttgtggctttgatacaagccctacgaatggcaaaggggaagt
ttatcaatatttacactgacagcaggtatgcttttggcactgcacggagc
aatatacaaagagggctgttgacatctgcagagactggttagaacattcc
cttatcatgttctgagattaccggggagtgactgactctgtggtcaaata
ttgtgtgccttgctaattaatgctaatccttccagaatgcctcctgggag
aagactgaggggatccacccaggcttctcactgggaagtaaacttcactg
aggtgaagccagccaagtatggtaacagtacttattagtgtttctagaca
ccaccttttcaagctgggtagaagcttttctaacagaactgagatggcca
tgtgatagccaagagaatctagaagaacgtcttcccaaagttgggatacc
taaggtaattcggatctgatatgacctgcattgtggcccaggtaagtcag

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_50561131_50561959
seq2: B6Ng01-213A11.g_638_1214

seq1  AAGGCGGGGGCAGCAGTGGTGGACAGAAAGCAAGTGATCTAGGCCAGCAG  50
      ||||| |||||||||||||||||||| ||||||||||||| |||||||||
seq2  AAGGCAGGGGCAGCAGTGGTGGACAGGAAGCAAGTGATCTGGGCCAGCAG  50

seq1  CCTCCCTGAAGAGACTTCGGCCCAGAAAGCCAAACTTGTGGCTTTGATAC  100
      ||||||||||| ||| ||||||||||||||  || |||||||||||||||
seq2  CCTCCCTGAAGGGACGTCGGCCCAGAAAGCTGAATTTGTGGCTTTGATAC  100

seq1  AAACTCTACGAATGGCAAACAGGAAGTCTATCAACATTTACACTGACAGC  150
      || | ||||||||||||||  |||||| |||||| |||||||||||||||
seq2  AAGCCCTACGAATGGCAAAGGGGAAGTTTATCAATATTTACACTGACAGC  150

seq1  AGGTATACTTTTGCCACGGCACAGAGCAATATACAGACAAAGGGGGCTGT  200
      |||||| |||||| ||| |||| |||||||||    |||||| |||||||
seq2  AGGTATGCTTTTGGCACTGCACGGAGCAATAT----ACAAAGAGGGCTGT  196

seq1  TGACATCCGCAGAGAAAGACCTAAGATGCTATGGCTAAAGGGAATCAGAT  250
      ||                                                
seq2  TG------------------------------------------------  198

seq1  GACAGACCTAACCACCAAGCAGGCAGCCCAGAGTGTTAACCTTCTGCCTG  300
                                                        
seq2  --------------------------------------------------  198

seq1  TAGCAGAAAAGTCCAAAACCCCTGTGGAAGTACACCCTGGAAGACTGGCA  350
                                                        
seq2  --------------------------------------------------  198

seq1  AGAAATAAAAAGATAGACCAGTTCTCTAGGATCCCAGAGAGGACTTGCTA  400
                                                        
seq2  --------------------------------------------------  198

seq1  AACCTCAGAAGGTAAGGAGATCCTACCCTTCAAAAAGGACTAGAATATGT  450
                                                        
seq2  --------------------------------------------------  198

seq1  CCAACAGATACATCACCCAACCCACCTAAGAGCTAAACATCTGCAGAGAC  500
                                          ||||||||||||||
seq2  ------------------------------------ACATCTGCAGAGAC  212

seq1  TGGTTAGAACATCCCTTTATCATGTTCTGAGATTATC-AGGAGTGGCTGA  549
      |||||||||||| || ||||||||||||||||||| |  |||||| ||||
seq2  TGGTTAGAACATTCCCTTATCATGTTCTGAGATTACCGGGGAGTGACTGA  262

seq1  CTCGGTCGTCAAACTTTGTGTGTCTTGCCAGCTGGTTAATGCTCATCCTT  599
      ||| || ||||||  ||||||| |||    |||  |||||||| ||||||
seq2  CTCTGTGGTCAAATATTGTGTGCCTT----GCTAATTAATGCTAATCCTT  308

seq1  CCAGAATGCCTCCTGAAAAAAG----------------------------  621
      |||||||||||||||  | |||                            
seq2  CCAGAATGCCTCCTGGGAGAAGACTGAGGGGATCCACCCAGGCTTCTCAC  358

seq1  ---------------ACTGAGGTGAAGCCAGCCAAGTATGGTAACAAGTA  656
                     |||||||||||||||||||||||||||||| ||||
seq2  TGGGAAGTAAACTTCACTGAGGTGAAGCCAGCCAAGTATGGTAAC-AGTA  407

seq1  CTTATTAGTGTTTCTA---TCCACCTTTTCAAGCTGGGTAGAAGCTTTTC  703
      ||||||||||||||||    ||||||||||||||||||||||||||||| 
seq2  CTTATTAGTGTTTCTAGACACCACCTTTTCAAGCTGGGTAGAAGCTTTT-  456

seq1  CTACCAGGACTGAGATGGCCAATGTGATGGCCAAAAAGATCCTAGAAGAA  753
      ||| ||| |||||||||||| ||||||| ||| || |||  |||||||||
seq2  CTAACAGAACTGAGATGGCC-ATGTGATAGCC-AAGAGAATCTAGAAGAA  504

seq1  -ATCTTCCCAAGATTGGAGATACCCAAAGGTAA-TCGGGTCTGATAATGG  801
        |||||||||  |||| |||| || ||||||| |||| |||||||   |
seq2  CGTCTTCCCAAAGTTGG-GATA-CCTAAGGTAATTCGGATCTGATA--TG  550

seq1  ACCTGCCTTTGTTGGCCAGGTAAGTCAG  829
      ||||| | |||| | |||||||||||||
seq2  ACCTG-CATTGTGGCCCAGGTAAGTCAG  577