BAC Information

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BAC

Clone NameB6Ng01-216E18
Chromosome17 (Build37)
Map Location 12,006,381 - 12,007,441
singlet/doubletsinglet
Overlap genePark2
Upstream genePacrg, LOC100041113
Downstream geneAgpat4, Tdgf1-ps2, Map3k4, 4732491K20Rik, LOC625753, Plg, Slc22a3, LOC100041192, Slc22a2, Slc22a1, Igf2r, Air
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-216E18.bB6Ng01-216E18.g
ACCGA033025GA033026
length1,055969
definitionB6Ng01-216E18.b B6Ng01-216E18.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttgacattatatcctttaatcttgggtggcaaagcataaaggca
tgaaaagattatttttttaatcaataacagttcagccattgtgttaacat
ttctaacttgtcatgtaggggttaaaatagaagcataagtattaaattag
ctagactgaatgggtagattcttatgtttctgacactgggtctctgattt
cccagcaccatcacatctagagtgtgtaggtgacggttttgtgagccacc
agctaagagtggaaaggttgggcatcaggtgccctgcatgactgggaatc
tagagaggcagcctgtattgagcatagacattttccataattatattgcc
tatggggctgccacctgtcctgatctgatgtgattaaggtgaaacacata
aactatcctcacttctcttggtgtggagtggagccaagttacacctcaag
gaagaagaggtgaatatgtctacacctggggcaggacaggaatgctgctg
cagcctctggtagccagggagcgaggagctggtctccgtgtcacaggaag
tctgagcttacaaactctgaagtgttttagcagggtatgtcagctattcc
catggctgttatgaaatgctcaacaagaagcaatttaggagaagatgttt
ttggcttgaagtttgaacataaagtttataacaatggggaaagcatggca
gtgggaatgtgagacagctcattgtgtccacagtcgggaaggagatgcta
acgttcagttcacttactccttggtattcagtccaggaggccactgcacc
gaatggtgtcagccacatccctacctcagctaatgctctctgaaacaccc
tcagagagggtaaagaggtgactaaatcgaatcaacttgctatcagtaat
caataattaccatcaatgatcatgataaccatcacataggttatcagagc
cttggcacactgccattccagtcgtgctgcaccattggggaatgttaccc
tgcttagacatcgagtataggtgacttaataggccattttgtgaatgata
ctggc
gaattcacaccaagtcactgcccatctcggggagtagtaatgaggtgatg
ggcgagcaacaaatcaggtgctgacacaccacgctgagggctatataagc
agcaccattttctgggtttggggtcttccctcctgaagaagcaataaagc
ttttgctgcagaagaatccggttgtccgagtgtgttcttgccggtgagaa
caatagctcgggacacttctgggaagtgttttctgaaagcacaaagaggc
tgtgttccagagatagccaagtttgtactcctgctgcagcaggacttggt
aatatgtaagggtcacccaggtggtactggttttgaaggcatgaaggggt
catgaagagcagctgaggctcgacactgtgagaggccatggaaggccatt
ggtgaaggtgcagctgcagttgcaattgaaggcccaggactgaaggggtc
atgcagtgttttggagatgccagtaccatgagatgaccaccaagagcagt
agcagcagtggagtacaggcatttggagcctagaggacaacgcgtgtgct
acaaagggcatggctggagaagtgacccaagcccttggaggagcccagaa
gattgtgagttggattccagacattggaaggttggagattgatttttgct
tttgattgtgactgtgccctgatattttccctcctgaaggaagaaactat
tttagtggagcccacagttaagagacttttaattgtaaaaagactttgga
tttttgaaagagatggatattttaaagagattgaaaattttagaatatgt
aaagactgtgggatgtttaaagttatttagaccttggagatgaataagaa
tgtaaagggtttaggcttactagttgatgttgtttgtgtgtcaagttgac
aaagtggtcatttgtacttgtctagtttttgtgttcaacttgacacagct
tgagtttaccacagagaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_12006381_12007441
seq2: B6Ng01-216E18.b_42_1096

seq1  GAATTCTTGACATTATATCCTTTAATCTTGGGTGGCAAAGCATAAAGGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGACATTATATCCTTTAATCTTGGGTGGCAAAGCATAAAGGCA  50

seq1  TGAAAAGATTATTTTTTTAATCAATAACAGTTCAGCCATTGTGTTAACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAGATTATTTTTTTAATCAATAACAGTTCAGCCATTGTGTTAACAT  100

seq1  TTCTAACTTGTCATGTAGGGGTTAAAATAGAAGCATAAGTATTAAATTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAACTTGTCATGTAGGGGTTAAAATAGAAGCATAAGTATTAAATTAG  150

seq1  CTAGACTGAATGGGTAGATTCTTATGTTTCTGACACTGGGTCTCTGATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGACTGAATGGGTAGATTCTTATGTTTCTGACACTGGGTCTCTGATTT  200

seq1  CCCAGCACCATCACATCTAGAGTGTGTAGGTGACGGTTTTGTGAGCCACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCACCATCACATCTAGAGTGTGTAGGTGACGGTTTTGTGAGCCACC  250

seq1  AGCTAAGAGTGGAAAGGTTGGGCATCAGGTGCCCTGCATGACTGGGAATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAAGAGTGGAAAGGTTGGGCATCAGGTGCCCTGCATGACTGGGAATC  300

seq1  TAGAGAGGCAGCCTGTATTGAGCATAGACATTTTCCATAATTATATTGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAGGCAGCCTGTATTGAGCATAGACATTTTCCATAATTATATTGCC  350

seq1  TATGGGGCTGCCACCTGTCCTGATCTGATGTGATTAAGGTGAAACACATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGGGCTGCCACCTGTCCTGATCTGATGTGATTAAGGTGAAACACATA  400

seq1  AACTATCCTCACTTCTCTTGGTGTGGAGTGGAGCCAAGTTACACCTCAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATCCTCACTTCTCTTGGTGTGGAGTGGAGCCAAGTTACACCTCAAG  450

seq1  GAAGAAGAGGTGAATATGTCTACACCTGGGGCAGGACAGGAATGCTGCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAGAGGTGAATATGTCTACACCTGGGGCAGGACAGGAATGCTGCTG  500

seq1  CAGCCTCTGGTAGCCAGGGAGCGAGGAGCTGGTCTCCGTGTCACAGGAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTCTGGTAGCCAGGGAGCGAGGAGCTGGTCTCCGTGTCACAGGAAG  550

seq1  TCTGAGCTTACAAACTCTGAAGTGTTTTAGCAGGGTATGTCAGCTATTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGCTTACAAACTCTGAAGTGTTTTAGCAGGGTATGTCAGCTATTCC  600

seq1  CATGGCTGTTATGAAATGCTCAACAAGAAGCAATTTAGGAGAAGATGTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCTGTTATGAAATGCTCAACAAGAAGCAATTTAGGAGAAGATGTTT  650

seq1  TTGGCTTGAAGTTTGAACATAAAGTTTATAACAATGGGGAAAGCATGGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTTGAAGTTTGAACATAAAGTTTATAACAATGGGGAAAGCATGGCA  700

seq1  GTGGGAATGTGAGACAGCTCATTGTGTCCACAGTCGGGAAGGAGATGCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGAATGTGAGACAGCTCATTGTGTCCACAGTCGGGAAGGAGATGCTA  750

seq1  ACGTTCAGTTCACTTACTCCTTGGTATTCAGTCCAGGAGGCCACTGCACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTTCAGTTCACTTACTCCTTGGTATTCAGTCCAGGAGGCCACTGCACC  800

seq1  GAATGGTGTCAGCCACATCCCTACCTCAGCTAATGCTCTCTGAAAACACC  850
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GAATGGTGTCAGCCACATCCCTACCTCAGCTAATGCTCTCTG-AAACACC  849

seq1  CTCAGAGAGGGTAAAGAGGTGACTAAATCGAATCAAACTTGCTAATCAGT  900
      |||||||||||||||||||||||||||||||||| |||||||| ||||||
seq2  CTCAGAGAGGGTAAAGAGGTGACTAAATCGAATC-AACTTGCT-ATCAGT  897

seq1  AATCAATAATAACCATCAATGATCAATGATAACCATCACATAAGGTTATC  950
      |||||||||| ||||||||||||| |||||||||||||||| ||||||||
seq2  AATCAATAATTACCATCAATGATC-ATGATAACCATCACAT-AGGTTATC  945

seq1  AGAGCCTTGGCACACTGCCATTCCAGTCGTGCTGCA-CATTGGGGAATG-  998
      |||||||||||||||||||||||||||||||||||| |||||||||||| 
seq2  AGAGCCTTGGCACACTGCCATTCCAGTCGTGCTGCACCATTGGGGAATGT  995

seq1  TACCCTGCTTAGACCATCGGAGTTATAGGTGACTTATTAGG-CATTTTGT  1047
      ||||||||||||| |||| ||| ||||||||||||| |||| ||||||||
seq2  TACCCTGCTTAGA-CATC-GAG-TATAGGTGACTTAATAGGCCATTTTGT  1042

seq1  GAATGAATACTGCC  1061
      ||||| |||||| |
seq2  GAATG-ATACTGGC  1055