BAC Information

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BAC

Clone NameB6Ng01-217F20
Chromosome17 (Build37)
Map Location 51,848,541 - 51,995,342
singlet/doubletdoublet
Overlap geneSatb1, EG628919
Upstream geneTbc1d5, LOC100043451, LOC100043452
Downstream geneLOC672987, EG328839
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-217F20.bB6Ng01-217F20.g
ACCGA033794GA033795
length1,181368
definitionB6Ng01-217F20.b B6Ng01-217F20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,848,541 - 51,849,705)(51,994,985 - 51,995,342)
sequence
gaattctctggcgttagtgttacctgtcattttgtaatgaactgagatag
ggtggcagtgaggttgctgagagtggagtcacaaaatgcagagaggtgtg
aagtcccccagtagagtgaatgtccttcatgaacttgcccagctctagtg
atgtgctaaggactgtgtagttcctttcctgtgaagtcctgtggagctct
gggcagacacatcttctccagctgctagatgtcagagtgtgtcatagaca
gaaagcaagagtccttctccctctctttagataccctaaggcctgggagg
tagaaagttaaaaacaaactccccaccatgagccgtaatggctggagcaa
aattctggacttactgtttgagacaggctttcatcctgaaagttgtttgg
ccttaaacttactctgcagcccagggtaacaattctactacctcagcctt
ccaaaaggtgagattaaggtccaacatcaccatgcctagcaagtatgacg
tcttgactgacagctcccagaacaaagcacatgtgttggagaaggaacca
tgactgtctgtcatatccagcccggcttgttggcatgtgctagaacatcc
acacaaaacatttttaattttttaaaatttattttaacttcattgtctat
gagtattttgcctacatgtatgtgtgtgtaccacatgcatgtccggtacc
cacaaaaaaaggaggggcagcagatcttttagaattggagttaagaacag
ttataaactgccatgtaagtctgagaccaaagccctggtcctctgtaaga
atagccagtgtttttaaacactcagccatctttctcagctgttctcctct
tcagaatataaacacgtgtatatggtttatgtatttttctatattaaaaa
ataaccctagaaaatccaaatggaaaggagttacagagacaaagtttgga
gctgagacaaaaggatggaccgtctagtgactgccatatccggagatcca
ttcccattaatcagcctccaaacgctgacccattgcaatacacctagcag
atttttgctgaatggacctgatataagcttgtctctctaaatgagaccta
cgccaggtccttagcaaacaccatatatttgatgctcccaggtcgtaaat
gatgggaataccatgggtccccccaatggag

agatcaggtaaagagaaataggaaatggagctttctttagggaccaagat
ggcaagatggcaccgttagtagatagggtttttttgctgctgtttaccca
tacgacttatggctccactttcccaagctcaacccatttttggagcccac
atcagtttagaatccttagattctagttacatagttactaagtgagcagc
ttgctagttcagtctcaccacacagttcctagctatcatggccaagttgg
tgcatgttctaacttgcttgccggaggcaggagttccctcttagttaagt
ggtaccatttactcttctctctctctctctctctctctctctctttctct
ctattttgtttattcttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_51848541_51849705
seq2: B6Ng01-217F20.b_46_1226

seq1  GAATTCTCTGGCGTTAGTGTTACCTGTCATTTTGTAATGAACTGAGATAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGGCGTTAGTGTTACCTGTCATTTTGTAATGAACTGAGATAG  50

seq1  GGTGGCAGTGAGGTTGCTGAGAGTGGAGTCACAAAATGCAGAGAGGTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCAGTGAGGTTGCTGAGAGTGGAGTCACAAAATGCAGAGAGGTGTG  100

seq1  AAGTCCCCCAGTAGAGTGAATGTCCTTCATGAACTTGCCCAGCTCTAGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCCCCAGTAGAGTGAATGTCCTTCATGAACTTGCCCAGCTCTAGTG  150

seq1  ATGTGCTAAGGACTGTGTAGTTCCTTTCCTGTGAAGTCCTGTGGAGCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCTAAGGACTGTGTAGTTCCTTTCCTGTGAAGTCCTGTGGAGCTCT  200

seq1  GGGCAGACACATCTTCTCCAGCTGCTAGATGTCAGAGTGTGTCATAGACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGACACATCTTCTCCAGCTGCTAGATGTCAGAGTGTGTCATAGACA  250

seq1  GAAAGCAAGAGTCCTTCTCCCTCTCTTTAGATACCCTAAGGCCTGGGAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCAAGAGTCCTTCTCCCTCTCTTTAGATACCCTAAGGCCTGGGAGG  300

seq1  TAGAAAGTTAAAAACAAACTCCCCACCATGAGCCGTAATGGCTGGAGCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAGTTAAAAACAAACTCCCCACCATGAGCCGTAATGGCTGGAGCAA  350

seq1  AATTCTGGACTTACTGTTTGAGACAGGCTTTCATCCTGAAAGTTGTTTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTGGACTTACTGTTTGAGACAGGCTTTCATCCTGAAAGTTGTTTGG  400

seq1  CCTTAAACTTACTCTGCAGCCCAGGGTAACAATTCTACTACCTCAGCCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAAACTTACTCTGCAGCCCAGGGTAACAATTCTACTACCTCAGCCTT  450

seq1  CCAAAAGGTGAGATTAAGGTCCAACATCACCATGCCTAGCAAGTATGACG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAGGTGAGATTAAGGTCCAACATCACCATGCCTAGCAAGTATGACG  500

seq1  TCTTGACTGACAGCTCCCAGAACAAAGCACATGTGTTGGAGAAGGAACCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGACTGACAGCTCCCAGAACAAAGCACATGTGTTGGAGAAGGAACCA  550

seq1  TGACTGTCTGTCATATCCAGCCCGGCTTGTTGGCATGTGCTAGAACATCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGTCTGTCATATCCAGCCCGGCTTGTTGGCATGTGCTAGAACATCC  600

seq1  ACACAAAACATTTTTAATTTTTTAAAATTTATTTTAACTTCATTGTCTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAAACATTTTTAATTTTTTAAAATTTATTTTAACTTCATTGTCTAT  650

seq1  GAGTATTTTGCCTACATGTATGTGTGTGTACCACATGCATGTCCGGTACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTATTTTGCCTACATGTATGTGTGTGTACCACATGCATGTCCGGTACC  700

seq1  CACAAAAAAAGGAGGGGCAGCAGATCTTTTAGAATTGGAGTTAAGAACAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAAAAAGGAGGGGCAGCAGATCTTTTAGAATTGGAGTTAAGAACAG  750

seq1  TTATAAACTGCCATGTAAGTCTGAGACCAAAGCCCTGGTCCTCTGTAAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAACTGCCATGTAAGTCTGAGACCAAAGCCCTGGTCCTCTGTAAGA  800

seq1  ATAGCCAGTGTTTTTAAACACTCAGCCATCTTTCTCAGCTGTTCTCCTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCCAGTGTTTTTAAACACTCAGCCATCTTTCTCAGCTGTTCTCCTCT  850

seq1  TCAGAATATAAACACGTGTATATGGTTTTATGTATTTTTCTATATT-AAA  899
      ||||||||||||||||||||||||| |||||||||||||||||||| |||
seq2  TCAGAATATAAACACGTGTATATGG-TTTATGTATTTTTCTATATTAAAA  899

seq1  AATAACCCTAGAAAATCCAAATGG-AAGGAGTTACAGAGACAAAGTTTGG  948
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AATAACCCTAGAAAATCCAAATGGAAAGGAGTTACAGAGACAAAGTTTGG  949

seq1  AGCTGAGACAAAAGGATGGACCGTCTAGTGACTGCCATATCCGGAGATCC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAGACAAAAGGATGGACCGTCTAGTGACTGCCATATCCGGAGATCC  999

seq1  A-TCCCA-TAATCAGCCTCCAAACGCTGACACCATTGC-ATACA-CTAGC  1044
      | ||||| |||||||||||||||||||||| ||||||| ||||| |||||
seq2  ATTCCCATTAATCAGCCTCCAAACGCTGAC-CCATTGCAATACACCTAGC  1048

seq1  AAGATTTTGCTGATAGGACCCTGATAT-AGC-TGTCTCT---AATGAGA-  1088
      |   |||||||||  ||| |||||||| ||| |||||||   ||||||| 
seq2  AGATTTTTGCTGAATGGA-CCTGATATAAGCTTGTCTCTCTAAATGAGAC  1097

seq1  CTACGCCGGGGCC-TAGCAAACA-CATA-AGTGGATGCTCACAGTCGGTT  1135
      ||||||| || || ||||||||| |||| | | ||||||| |||   || 
seq2  CTACGCCAGGTCCTTAGCAAACACCATATATTTGATGCTCCCAGGTCGTA  1147

seq1  AATGGATGGATCAC--TGGG--CCCCCAATGGAG  1165
      ||||   |||  ||  ||||  ||||||||||||
seq2  AATGATGGGAATACCATGGGTCCCCCCAATGGAG  1181


seq1: chr17_51994985_51995342
seq2: B6Ng01-217F20.g_67_424 (reverse)

seq1  AGAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAGTAAATGGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAGTAAATGGTA  50

seq1  CCACTTAACTAAGAGGGAACTCCTGCCTCCGGCAAGCAAGTTAGAACATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTAACTAAGAGGGAACTCCTGCCTCCGGCAAGCAAGTTAGAACATG  100

seq1  CACCAACTTGGCCATGATAGCTAGGAACTGTGTGGTGAGACTGAACTAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAACTTGGCCATGATAGCTAGGAACTGTGTGGTGAGACTGAACTAGC  150

seq1  AAGCTGCTCACTTAGTAACTATGTAACTAGAATCTAAGGATTCTAAACTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGCTCACTTAGTAACTATGTAACTAGAATCTAAGGATTCTAAACTG  200

seq1  ATGTGGGCTCCAAAAATGGGTTGAGCTTGGGAAAGTGGAGCCATAAGTCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGGCTCCAAAAATGGGTTGAGCTTGGGAAAGTGGAGCCATAAGTCG  250

seq1  TATGGGTAAACAGCAGCAAAAAAACCCTATCTACTAACGGTGCCATCTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGGTAAACAGCAGCAAAAAAACCCTATCTACTAACGGTGCCATCTTG  300

seq1  CCATCTTGGTCCCTAAAGAAAGCTCCATTTCCTATTTCTCTTTACCTGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTTGGTCCCTAAAGAAAGCTCCATTTCCTATTTCTCTTTACCTGAT  350

seq1  CTGAATTC  358
      ||||||||
seq2  CTGAATTC  358


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