BAC Information

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BAC

Clone NameB6Ng01-218B12
Chromosome17 (Build37)
Map Location 50,695,816 - 50,792,948
singlet/doubletdoublet
Overlap genePlcl2
Upstream geneDaam2, Kif6, EG668470, Rftn1, EG668475, EG628747, LOC100043818, Dazl
Downstream geneEG654432, Tbc1d5, LOC100043451, LOC100043452
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-218B12.bB6Ng01-218B12.g
ACCGA034315GA034316
length3541,137
definitionB6Ng01-218B12.b B6Ng01-218B12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,792,595 - 50,792,948)(50,695,816 - 50,696,401)
sequence
ttccacatactgccatccatatacagccaggggttacagttaatcccgag
ttaagaaccacatcttagtggttaactagaagtgtggtcctgtgaaaggg
tgacttgagggccaggtgctgtattattcaacagtcagcacagatagaca
tttaaaggaatcaaagcttgaaggctgagaacacagtacacaacccagac
aaagccagagagtcacaagcctatgcttagaggtgactaagcccaggagc
cagcaaatggtcaatctcacagagaactgccacagttgctctttcaaaac
atatttttacattgtatgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
tgtg

gaattccagaacatcatgttctgtaaaacaaacaactcaattgaccgtct
tcctagtccctggcaaccacgaacacactctgtctctctgaatttgtctt
ttctgcacatgtaaaataaatgagactgacttctttcatttttgcccagt
gttttaataatttatcctgtgtcagtttgcttctttttttatagttgaat
aactatagccattgtatgggtataccatcatttattcagttattagccaa
aggactttcagattatctctatcttttgactgtcataagcaaggttatta
ataacagtacacaaatttttgtatggacatatatttttatttcaccataa
ttcctagaaatcgtactgacaggttatatggtagctctaatattttaaat
atatactgattttttaaaatacatttttagttgagatagacatttgtcac
tttcacctaccctttcctcccctcagctcctgtaagttcccttccctcta
ctcgctcctctccaccatctcaagttgatagactcattgcctttgattat
tatttttacattcatatatatgtgtatgtatgcaaacatatatgaatgcc
acctgctgagtccattttattagtttctgtgtatatagtttcagagctga
ctcctcagaattggatgaccaatcaggggctcattccagggagcggctaa
ctctcctccttccaccagcctttagttgcctgtacctttgtgtctaggag
aaggaccccatgagattctcctgctaccaccgaggtatgtctgttgattc
agaagactgtttcatagcagacatgtattttggcttttacagtcttactg
atcctccctctgagatattccttaagccatagattcagaaactgtgataa
tagttgtgtctgttggtgcttggcgccccacaacctgttgacttctgcat
tgtgtccaggtggtgctttgtgtgatggtctccatctgctgtgagagagg
ctttccttgattagctacacttacatctgagattagtaggttcactttat
cctagaaatgatattgaccaggtagaatagtagacttgcaatgttgttct
ttaagcggcaaaccttagctttcatggtgaactgttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_50792595_50792948
seq2: B6Ng01-218B12.b_52_405 (reverse)

seq1  CACACACACACACACACACACACACACACACACATACATACAATGTAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACATACATACAATGTAAAA  50

seq1  ATATGTTTTGAAAGAGCAACTGTGGCAGTTCTCTGTGAGATTGACCATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTTTTGAAAGAGCAACTGTGGCAGTTCTCTGTGAGATTGACCATTT  100

seq1  GCTGGCTCCTGGGCTTAGTCACCTCTAAGCATAGGCTTGTGACTCTCTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCTCCTGGGCTTAGTCACCTCTAAGCATAGGCTTGTGACTCTCTGG  150

seq1  CTTTGTCTGGGTTGTGTACTGTGTTCTCAGCCTTCAAGCTTTGATTCCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTCTGGGTTGTGTACTGTGTTCTCAGCCTTCAAGCTTTGATTCCTT  200

seq1  TAAATGTCTATCTGTGCTGACTGTTGAATAATACAGCACCTGGCCCTCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGTCTATCTGTGCTGACTGTTGAATAATACAGCACCTGGCCCTCAA  250

seq1  GTCACCCTTTCACAGGACCACACTTCTAGTTAACCACTAAGATGTGGTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACCCTTTCACAGGACCACACTTCTAGTTAACCACTAAGATGTGGTTC  300

seq1  TTAACTCGGGATTAACTGTAACCCCTGGCTGTATATGGATGGCAGTATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTCGGGATTAACTGTAACCCCTGGCTGTATATGGATGGCAGTATGT  350

seq1  GGAA  354
      ||||
seq2  GGAA  354


seq1: chr17_50695816_50696401
seq2: B6Ng01-218B12.g_619_1201

seq1  TTTACATTCATATATATGTGTATGTATGCAAACATATATGAATGCCACCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACATTCATATATATGTGTATGTATGCAAACATATATGAATGCCACCT  50

seq1  GCTGAGTCCATTTTATTAGTTTCTGTGTATATAGTTTCAGAGCTGACTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGTCCATTTTATTAGTTTCTGTGTATATAGTTTCAGAGCTGACTCC  100

seq1  TCAGAATTGGATGACCAATCAGGGGCTCATTCCAGGGAGCGGCTAACTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAATTGGATGACCAATCAGGGGCTCATTCCAGGGAGCGGCTAACTCT  150

seq1  CCTCCTTCCACCAGCCTTTAGTTGCCTGTACCTTTGTGTCTAGGAGAAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTTCCACCAGCCTTTAGTTGCCTGTACCTTTGTGTCTAGGAGAAGG  200

seq1  ACCCCATGAGATTCTCCTGCTACCACCGAGGTATGTCTGTTGATTCAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  ACCCCATGAGATTCTCCTGCTACCACCGAGGTATGTCTGTTGATTCA-GA  249

seq1  AGACTGTTTCATAGCAGACATGTATTTTGGCTTTTACAGTCTTACTGATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGTTTCATAGCAGACATGTATTTTGGCTTTTACAGTCTTACTGATC  299

seq1  CTCCCTCTGAGATATTCCTTAAGCCATAGATTCAGAAACTGTGATAATAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTCTGAGATATTCCTTAAGCCATAGATTCAGAAACTGTGATAATAG  349

seq1  TTGTGTCTGTTGGTGCTTGGCGCCCCACAACCTGTTGACTTCTGCATTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTCTGTTGGTGCTTGGCGCCCCACAACCTGTTGACTTCTGCATTGT  399

seq1  GTCCA-GTGGTGCTTTGTGTGATGGTCTCCATCTGCTGTGAAGAGAGGC-  448
      ||||| |||||||||||||||||||||||||||||||||| |||||||| 
seq2  GTCCAGGTGGTGCTTTGTGTGATGGTCTCCATCTGCTGTG-AGAGAGGCT  448

seq1  TTCCTTGATTAGCTACACTTACATCTGAGAATTAGTAGGGTTCCACTTTA  498
      ||||||||||||||||||||||||||||| |||||||||  | |||||||
seq2  TTCCTTGATTAGCTACACTTACATCTGAG-ATTAGTAGG--TTCACTTTA  495

seq1  ATTCCTAGAAATGATATTGA-CAGGTTAGATAGTAGACCTGCCATGTTGT  547
        |||||||||||||||||| |||||   ||||||||| ||| |||||||
seq2  --TCCTAGAAATGATATTGACCAGGTAGAATAGTAGACTTGCAATGTTGT  543

seq1  TCTTTAAAGCGGCAAA-CTTAGCTTTCATGGTG-ACTGTTT  586
      ||||| |||||||||| |||||||||||||||| |||||||
seq2  TCTTT-AAGCGGCAAACCTTAGCTTTCATGGTGAACTGTTT  583


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