BAC Information

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BAC

Clone NameB6Ng01-218I05
Chromosome17 (Build37)
Map Location 80,389,644 - 80,390,830
singlet/doubletsinglet
Overlap genenone
Upstream genePrkcn, LOC675425, Qpct, LOC668812, LOC383277, Cdc42ep3, LOC639964, AW061290, Cyp1b1, EG668821, Arl6ip2, LOC625074
Downstream geneHnrpll, Gpx4-ps, Galm, Sfrs7, 4930560E09Rik, Gemin6, Dhx57, Morn2, Sos1, Cdkl4, F420015M19Rik, Map4k3, LOC100043697, C230072F16Rik, LOC675572, EG668830, Tmem178
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-218I05.bB6Ng01-218I05.g
ACCGA034622GA034623
length1,2311,193
definitionB6Ng01-218I05.b B6Ng01-218I05.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctttaggggctgcaagaggctagtgaaaaaaatttctcaggaac
agcaaagggccattgaataaactcattgggggccacagtaggctggtaaa
aaaaggaagagaaacgggaaaaagaatcatacacacacacatacaaatat
atacaaacacagacatacgcacatagacacatgcacacagacaaacacag
acacacatagacacagacacaaacacacagacacacacacagacacacac
acatagacacatatatacacacagacaaacacacagacacacacacatag
acacacacacaaacacacacacaaacacacagacacacacacagagacac
agactcacatacacacacaaacacacagacacatacacacaaacacacag
acacacacacatagacacatatacacacacagacagacacacacacatag
acacatatacacacacagacagacacacacacacacacacacacacatac
actcaggtgcatgatgactgaagcaaactttaataagctccaacaatttc
acatacatacatacatacatacatacatacatacatacgtacgtacatac
atacatacattcatacatacatacatacatacacattcacacactgggta
gatggagcaaagcctcaaccactttccacacatgcacacacacatatttt
ggtgatgaagcaaacgccaacgagctggctccaaccactttacatacaca
tatgtacacatgtttggtggatggagcaaagcttcaatgagcaggctcca
aaaactttatttttttttccttctacagcttatatatcccagcacaacct
ttcaagcagtaaaaattacaatgtgattacattctacttttcttctagcg
aatgactatgaaaagaacagtctgttccctagtacctttacaagaaatag
cattacatagtacagggaaagaaaaaaatgatttcccaagaacccacgta
catttgtaactaagcaacttgctatagattacaaatatgagcaagcaagt
aatttctcaaccattttcctcttcttgggaggcaacatttgcagtttaag
agaaaggatcattattttaattattaatcttaaaagtattcatataaaaa
atcttaaaggaacccaagtctgaacttttcggtcaaaggacaaccaccca
ttgtatttttaggaagcgctccgaaagtagt
gaattcagaagtcagcaaaggtgtcagccctctggttttggagacttgtc
agtcctccactgactatcagagcacacccctcacaggcctgccatctcca
agtctttctgggggcagttttgacctttcccgcagggcgtgtcactgtgg
taagcttctcattggctggtggagcctcatgtggagtcaggtggatagct
gtgtcttttctgggttctcactgcattccaattagcctactttgcctaat
cagagccagcaggaactacctcacactctccacatcccttgctaccaacg
ctaagaagcttgcttgactaccgaatgacgttaattgccagagtaattct
cagagtgtttatgatcttagaattcttcctcaccttctttaccacacaat
cctgcttcttccttgtcagtgtgtgataacaattccttgattttattttt
gagacagggtctcacgttggcctcaaacttactatgtaactgaggaggtc
cttgaaccctcctccgtctcaggagtggtaggatttggtgtggcagaata
atggaggcctggctcttggcatgagccaccttaataaagatcctgtggaa
gatggcaagcttgctcactcccactccatgtctcctctttagatcagtgc
tccctgcccccaagaaaaaagagttttaaccgtacagtcttcccttgaag
gcaaatgcaggcagaatcccagtttaaagctgagtgtagactaggagata
cagaggagtgggggaagtgattttcttctctcctcagtctcccctttccc
caagtacctgcaggctccctattaaacattccaataatggctgtcccctg
gaccaatccagcacctttgatcagaaaggacaacagtaatcgtagccttt
ccccacccacatcgcctttcccagccacagcctaggacagattttcccaa
gccgcgagctgaaattcaattcggaggcattcctccggctgtttacttgg
ttgttttcatgcctcacaagttctgggggtgcctctgactgaatccctgc
ctcgccagacctgcagcagtgccaagaaggcaggcttgcattgggttgca
gcggaaccacatgggaccgcctgaagcttgctaatgatttccatggtggg
cttcttggcaacgaatcttgctcgttgatttggggttttctca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_80389644_80390830
seq2: B6Ng01-218I05.g_67_1259

seq1  GAATTCAGAAGTCAGCAAAGGTGTCAGCCCTCTGGTTTTGGAGACTTGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAAGTCAGCAAAGGTGTCAGCCCTCTGGTTTTGGAGACTTGTC  50

seq1  AGTCCTCCACTGACTATCAGAGCACACCCCTCACAGGCCTGCCATCTCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTCCACTGACTATCAGAGCACACCCCTCACAGGCCTGCCATCTCCA  100

seq1  AGTCTTTCTGGGGGCAGTTTTGACCTTTCCCGCAGGGCGTGTCACTGTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTTCTGGGGGCAGTTTTGACCTTTCCCGCAGGGCGTGTCACTGTGG  150

seq1  TAAGCTTCTCATTGGCTGGTGGAGCCTCATGTGGAGTCAGGTGGATAGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTTCTCATTGGCTGGTGGAGCCTCATGTGGAGTCAGGTGGATAGCT  200

seq1  GTGTCTTTTCTGGGTTCTCACTGCATTCCAATTAGCCTACTTTGCCTAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTTTTCTGGGTTCTCACTGCATTCCAATTAGCCTACTTTGCCTAAT  250

seq1  CAGAGCCAGCAGGAACTACCTCACACTCTCCACATCCCTTGCTACCAACG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCCAGCAGGAACTACCTCACACTCTCCACATCCCTTGCTACCAACG  300

seq1  CTAAGAAGCTTGCTTGACTACCGAATGACGTTAATTGCCAGAGTAATTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAAGCTTGCTTGACTACCGAATGACGTTAATTGCCAGAGTAATTCT  350

seq1  CAGAGTGTTTATGATCTTAGAATTCTTCCTCACCTTCTTTACCACACAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTGTTTATGATCTTAGAATTCTTCCTCACCTTCTTTACCACACAAT  400

seq1  CCTGCTTCTTCCTTGTCAGTGTGTGATAACAATTCCTTGATTTTATTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTTCTTCCTTGTCAGTGTGTGATAACAATTCCTTGATTTTATTTTT  450

seq1  GAGACAGGGTCTCACGTTGGCCTCAAACTTACTATGTAACTGAGGAGGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAGGGTCTCACGTTGGCCTCAAACTTACTATGTAACTGAGGAGGTC  500

seq1  CTTGAACCCTCCTCCGTCTCAGGAGTGGTAGGATTTGGTGTGGCAGAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAACCCTCCTCCGTCTCAGGAGTGGTAGGATTTGGTGTGGCAGAATA  550

seq1  ATGGAGGCCTGGCTCTTGGCATGAGCCACCTTAATAAAGATCCTGTGGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGGCCTGGCTCTTGGCATGAGCCACCTTAATAAAGATCCTGTGGAA  600

seq1  GATGGCAAGCTTGCTCACTCCCACTCCATGTCTCCTCTTTAGATCAGTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCAAGCTTGCTCACTCCCACTCCATGTCTCCTCTTTAGATCAGTGC  650

seq1  TCCCTGCCCCCAAGAAAAAAGAGTTTTAACCGTACAGTCTTCCCTTGAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGCCCCCAAGAAAAAAGAGTTTTAACCGTACAGTCTTCCCTTGAAG  700

seq1  GCAAATGCAGGCAGAATCCCAGTTTAAAGCTGAGTGTAGACTAGGAGATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATGCAGGCAGAATCCCAGTTTAAAGCTGAGTGTAGACTAGGAGATA  750

seq1  CAGAGGAGT-GGGGAAGTGATTTTCTTCTCTCCTCAGTCTCCCCTTTCCC  799
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGAGTGGGGGAAGTGATTTTCTTCTCTCCTCAGTCTCCCCTTTCCC  800

seq1  CAAGTACCTGCAGGCTCCCTATTAAACATTCCAATAATGGCTGTCCCCTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTACCTGCAGGCTCCCTATTAAACATTCCAATAATGGCTGTCCCCTG  850

seq1  GACCAATCCAGCACCTTTGATCAG-AAGGAC-ACAGTAATCGTAGCC-TT  896
      |||||||||||||||||||||||| |||||| ||||||||||||||| ||
seq2  GACCAATCCAGCACCTTTGATCAGAAAGGACAACAGTAATCGTAGCCTTT  900

seq1  CCCCACCCACATCGCCTTTCCCAGCCACAGCCTAGGACAGATTTTCCCAA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACCCACATCGCCTTTCCCAGCCACAGCCTAGGACAGATTTTCCCAA  950

seq1  GCCGCGAGCTGAAATTCAA-TCGGAGGCATTCCTCCGGCTGTTTACTTGG  995
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GCCGCGAGCTGAAATTCAATTCGGAGGCATTCCTCCGGCTGTTTACTTGG  1000

seq1  -TGTTTTCATGCCTCACAGGTTCTGGGGTGCCCTCTGACTGAAT-CCTGC  1043
       ||||||||||||||||| |||||||||   ||||||||||||| |||||
seq2  TTGTTTTCATGCCTCACAAGTTCTGGGGGTGCCTCTGACTGAATCCCTGC  1050

seq1  CTCGGCCAGACCTGCAGGCAGTGCCAAGAAGCAGGGCTGGCATTGGGTGG  1093
      ||| |||||||||||| ||||||||||||||   |||| ||||||||| |
seq2  CTC-GCCAGACCTGCA-GCAGTGCCAAGAAGGCAGGCTTGCATTGGGTTG  1098

seq1  CAGCGGA--CACATGGG--CG-CTGAAGCCTGCTTTATGATTCCCATG--  1136
      |||||||  ||||||||  || ||||||| ||| | |||||| |||||  
seq2  CAGCGGAACCACATGGGACCGCCTGAAGCTTGC-TAATGATTTCCATGGT  1147

seq1  TGGCTTCCTTTTGCAAACAGATTCTTGGCTCTGTGGTTTGGGGTTTCCTC  1186
       ||||||  || ||||   || |||| ||||  || |||||||||| |||
seq2  GGGCTTC--TTGGCAA--CGAATCTT-GCTCGTTGATTTGGGGTTTTCTC  1192

seq1  A  1187
      |
seq2  A  1193