BAC Information

Click to search

BAC

Clone NameB6Ng01-219J06
Chromosome17 (Build37)
Map Location 12,075,211 - 12,076,358
singlet/doubletsinglet
Overlap genePark2
Upstream geneLOC100041113
Downstream geneAgpat4, Tdgf1-ps2, Map3k4, 4732491K20Rik, LOC625753, Plg, Slc22a3, LOC100041192, Slc22a2, Slc22a1, Igf2r, Air, EG635617, Mas1, Mrgprh
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-219J06.bB6Ng01-219J06.g
ACCGA035372GA035373
length1,1741,143
definitionB6Ng01-219J06.b B6Ng01-219J06.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggcagagaagcacttgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggagtgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaactggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaacaggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacctagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
gaaactcacacaatatgtattcactgataagtggatattagccccaaacc
taggatacccaagatataagatataatttgctaaacacatgaaactcaag
gagaatgaagactgaagtgtggacactatgcccctccttagatttgggaa
caaaacacccatggaaggagttacagagacggagtttggagctgagatga
aaggatggaccatgtagagactgccatagccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttattgaaa
ggacgcagatgtagctgtctcttgtgagactatgccggggcccagcaaac
acagaagtggatgctccacagtcagctaatggatggatcatagggcttcc
ccattgggaggagctagagaaagtagcccaaggagcttaaaggggatctg
caaccctattatggtggaacaacaataatgagctaacccagttaccccgg
agctcttggatctaggctgcattattatccaaaagatgacctagtccggc
catcactggaaaagaaagggtccaattgacttgcaaccttaatatggccc
catacaggaataacccaggtctat
gaattctttctccttcagatgtctcacctcctatttcctgcctaagccat
aggccatgggctttttaattgacaggtgatacagccataatccatacaat
acacaagattatatatacacatacatgtatacatatatacacatacctat
atacatacacatatatacatatatatgtatgtatatactatgttagattc
tctgtttatgactgtgattaaatactctgacaaaagggagaaaggcttta
ttttagctcacagaccagcaaggtggggaagtcagaggacaggagcctga
agcagatgcccatggtgcatctgcactagagaggcagagagtaacaaacg
caggctgctcagccccctccttccatttatagcacacaggcccagagaag
gaatggccccacccacagtgtgccggtctccccactcacttaaagcagcc
aagataatgcccacaggattctatcaagttgacaacactaaccattgcat
atacatacatgactttacgtgcccataagaaatccaagacccatgtgtga
gagaaaacataaggctttctgagtttggtctaattcacttaatatgatta
tattcaattgtatccatttccccacaaataatatacttttgttcttacac
ttgaaaatttttgcttatattctgtattagtcagggttctctagagtcac
agaacttatggatagtctctagatagtaaaggaatttaatgatgacttac
aggcggcagcccaattcccaacaattgttcagtcgcagctgtgaatggaa
gtccaaggatctagcagttactcagtctcacgcagcaagcaggcgaagga
gaaagagctagagctagactcccttcttccaatgtccttatattgtctcc
agcagaatgtgtcgcccagattaaaaggtgtgttccaccacacctttaat
cccagatgaaagtgtagcccagatttaaaggtggtgttccttaaactcgg
gagattcatcttctggatccatgggccactatggctcagatctcaaccaa
gatcagaataaggattcttccagcatccagataaggtcacctgatgatct
tcaattctgatgtagtcaatttcaaaatagtcaagttgacaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_12075211_12076358
seq2: B6Ng01-219J06.g_66_1208

seq1  GAATTCTTTCTCCTTCAGATGTCTCACCTCCTATTTCCTGCCTAAGCCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCTCCTTCAGATGTCTCACCTCCTATTTCCTGCCTAAGCCAT  50

seq1  AGGCCATGGGCTTTTTAATTGACAGGTGATACAGCCATAATCCATACAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCATGGGCTTTTTAATTGACAGGTGATACAGCCATAATCCATACAAT  100

seq1  ACACAAGATTATATATACACATACATGTATACATATATACACATACCTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAGATTATATATACACATACATGTATACATATATACACATACCTAT  150

seq1  ATACATACACATATATACATATATATGTATGTATATACTATGTTAGATTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATACACATATATACATATATATGTATGTATATACTATGTTAGATTC  200

seq1  TCTGTTTATGACTGTGATTAAATACTCTGACAAAAGGGAGAAAGGCTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTATGACTGTGATTAAATACTCTGACAAAAGGGAGAAAGGCTTTA  250

seq1  TTTTAGCTCACAGACCAGCAAGGTGGGGAAGTCAGAGGACAGGAGCCTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGCTCACAGACCAGCAAGGTGGGGAAGTCAGAGGACAGGAGCCTGA  300

seq1  AGCAGATGCCCATGGTGCATCTGCACTAGAGAGGCAGAGAGTAACAAACG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGATGCCCATGGTGCATCTGCACTAGAGAGGCAGAGAGTAACAAACG  350

seq1  CAGGCTGCTCAGCCCCCTCCTTCCATTTATAGCACACAGGCCCAGAGAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTGCTCAGCCCCCTCCTTCCATTTATAGCACACAGGCCCAGAGAAG  400

seq1  GAATGGCCCCACCCACAGTGTGCCGGTCTCCCCACTCACTTAAAGCAGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGCCCCACCCACAGTGTGCCGGTCTCCCCACTCACTTAAAGCAGCC  450

seq1  AAGATAATGCCCACAGGATTCTATCAAGTTGACAACACTAACCATTGCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAATGCCCACAGGATTCTATCAAGTTGACAACACTAACCATTGCAT  500

seq1  ATACATACATGACTTTACGTGCCCATAAGAAATCCAAGACCCATGTGTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATACATGACTTTACGTGCCCATAAGAAATCCAAGACCCATGTGTGA  550

seq1  GAGAAAACATAAGGCTTTCTGAGTTTGGTCTAATTCACTTAATATGATTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAACATAAGGCTTTCTGAGTTTGGTCTAATTCACTTAATATGATTA  600

seq1  TATTCAATTGTATCCATTTCCCCACAAATAATATACTTTTGTTCTTACAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCAATTGTATCCATTTCCCCACAAATAATATACTTTTGTTCTTACAC  650

seq1  TTGAAAATTTTTGCTTATATTCTGTATTAGTCAGGGTTCTCTAGAGTCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAATTTTTGCTTATATTCTGTATTAGTCAGGGTTCTCTAGAGTCAC  700

seq1  AGAACTTATGGATAGTCTCTAGATAGTAAAGGAATTTAATGATGACTTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTTATGGATAGTCTCTAGATAGTAAAGGAATTTAATGATGACTTAC  750

seq1  AGGCGGCAGCCCAATTCCCAACAATTGTTCAGTCGCAGCTGTGAATGGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCGGCAGCCCAATTCCCAACAATTGTTCAGTCGCAGCTGTGAATGGAA  800

seq1  GTCCAAGGATCTAGCAGTTACTCAGTCTCACGCAGCAAGCAGGCGAAGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAAGGATCTAGCAGTTACTCAGTCTCACGCAGCAAGCAGGCGAAGGA  850

seq1  GAAAGAGCTAGAGCTAGACTCCCTTCTTCCAATGTCCTTATATTGTCTCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAGCTAGAGCTAGACTCCCTTCTTCCAATGTCCTTATATTGTCTCC  900

seq1  AGCAGAAGGTGTCGCCCAGATT-AAAGGTGTGTTCCACCACACCTTTAAT  949
      ||||||| |||||||||||||| |||||||||||||||||||||||||||
seq2  AGCAGAATGTGTCGCCCAGATTAAAAGGTGTGTTCCACCACACCTTTAAT  950

seq1  CCCAGATGAAAGGTGTAGCCCAGA-TTAAAGGT-GTGTTCCTTAAACTC-  996
      ||||||||||| |||||||||||| |||||||| ||||||||||||||| 
seq2  CCCAGATGAAA-GTGTAGCCCAGATTTAAAGGTGGTGTTCCTTAAACTCG  999

seq1  GGAGATTCAATCTTCTGGAATCCAT-GGCCACTATGGCTCAAGATCTCCA  1045
      |||||||| ||||||||| |||||| |||||||||||||| |||||||  
seq2  GGAGATTC-ATCTTCTGG-ATCCATGGGCCACTATGGCTC-AGATCTC--  1044

seq1  AACCAAGATCCAGATAAGGA-TCTCCAAGCATCCAGATAAGGGTCA-CTG  1093
      ||||||||||   ||||||| ||| | ||||||||||||| ||||| |||
seq2  AACCAAGATCAGAATAAGGATTCTTCCAGCATCCAGATAA-GGTCACCTG  1093

seq1  ATGAGCCTTCCAATTCTGGATTGTAGTTCATTCCAAATATAGTCAAGTTG  1143
      |||| |  | ||||||||   ||||||  ||| |||| ||||||||||||
seq2  ATGATC--TTCAATTCTG--ATGTAGTCAATTTCAAA-ATAGTCAAGTTG  1138

seq1  ACAAC  1148
      |||||
seq2  ACAAC  1143