BAC Information

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BAC

Clone NameB6Ng01-220B16
Chromosome17 (Build37)
Map Location 25,275,769 - 25,276,403
singlet/doubletsinglet
Overlap geneClcn7
Upstream genePdpk1, Amdhd2, Atp6v0c, Tbc1d24, Ntn2l, 1600002H07Rik, Ccnf, Abca17, Abca3, Rnps1, Dci, Dnase1l2, E4f1, 1700012G19Rik, Gbl, 9930021D14Rik, LOC666299, Caskin1, Traf7, Rab26, Pkd1, Tsc2, Nthl1, Slc9a3r2, Npw, Zfp598, Syngr3, Gfer, Noxo1, Tbl3, Rnf151, Rps2, Snora64, Ndufb10, Rpl3l, Sepx1, Hs3st6, 4930528F23Rik, Fahd1, Hagh, Igfals, Nubp2, Spsb3, Mrps34, Nme3, Mapk8ip3, Hn1l, Cramp1l, Ift140, BC054438, Telo2, 1110018H23Rik
Downstream geneGm317, BC003965, Unkl, Gnptg, 0610007P22Rik, Ube2i, Prss34, Prss28, Prss29, LOC432543, LOC666472, Tpsab1, Mcpt6, Tpsg1, Cacna1h, Tekt4, Sstr5, LOC100042580, Sox8, Tmem112, LOC545396, Gng13, Chtf18, Rpusd1, BC052484, Msln, Narfl, Haghl, Ccdc78, BC008155, Metrn, Fbxl16, Wdr24, 2610003J06Rik, Stub1, Rhbdl1, Rhot2, Wdr90, 9530058B02Rik, 0610011F06Rik, Wfikkn1, Rab40c, LOC100043160, Pigq, F430201B04Rik, D630044L22Rik, Solh, 1700022N22Rik, Rab11fip3, Decr2, Nme4, EG666609, Tmem8, Mrpl28, Axin1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-220B16.bB6Ng01-220B16.g
ACCGA035748GA035749
length6361,220
definitionB6Ng01-220B16.b B6Ng01-220B16.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcattctgtagaccagactggtctcaaactcagagatctgcctgcc
tctgcctcctgagtgctgggattgaaggtgtgcgccactatgacttgccc
atttggtatagtcttaatgttgggcaatcagtctctagaacttcttcatc
ttgtaaaactgaaactgtacccagaattttcttgtcttcttcctccttcc
cctggccaccacctcttactttctgtcttcatgggtgcagccagactaag
gaggctaacctcaaacagctttatagctgaacttgtggggggtggggaag
gagtggaggcaggccatcaccacatagctgacaggcctggaatacactat
gtagaccatgctggcttacatgtatgtatttgcactgcatacatgcctaa
tgtaggcagaagccaggagcatatcagatcccctgaaactatagttatag
atggtatgagctgccatgtggtggctggggatcaaaccctgggtcctctg
gaagagcagccagtgttcttaaccactgtgcggtcttccagttctgacct
tgagcttttgattcctctctttccacctaaatgctggggttacaagacct
atgctggcatgcctggtttctgcagtgctggagatt
gaattcacacatctgcatgcaaggcacagtgggaccctaccaattggctc
taattggtaaataaagttgccaggctgccaatggctgggcagggagactg
aggtgggactttaaataagagtttctgggcaagggaaccatggggaaaag
agggatttttagaatcgccatgctggggaagcaggaggatcagtcttgag
agctgtaggagagaaagcatacggccatgtaagagctgaggatgagtggc
cccagggggccctccccaaatagtgtctggggtagcaaagatggaatata
gattttagtaaatgataaattcaggagtctcagagggtaggtgttagcaa
tgtggaaggttgggaggggcccagctgttgggctgcttagggcatattaa
aaataaggctgcatgtgtgtgtcttttattcaagaatccacatggagccg
gggcagtggtggcgcacgactttgatcccagcacttgggaggcagaggca
ggcagatttctgagtttgaggccagtctggtctacattgagttctagaac
agccagaactacacagagaaaccctgtctcaaaaaaccaaaaaaaacaaa
acaaaacaaaaaaaagaatctacatgggatagtcataagaagtgcttgcc
tgctagggagattagagtgatttgcatactatcactacaccatggcgtta
catcatacactcctgctctaaaccttctgcagtgccctgtggaccacaga
tcaatcctttcaataactacatacgacttccagctgcctctccacgcagt
ctttccctcagtctcattcctgcagaaaaatccaattatcccgtgagtcc
agaccaggcttcaactgtgaccctagcctgaaagtagattccaaagtgga
atgtggtacgattttgtgcaatttaggggtggtattcacatagaacaaga
cttccagggtcagttggagggctaggcacggataatgcataggactcttt
aaacttaaaaaaactcaagtaaaaagattactgggggccactcagagcca
cggcaccaaaatggaagtcctcctagaccaatctgctgatatacctttgg
gtttccaaatggtacattcacaggtcaacatccttatggcatagagacca
tggaacttggatgccgttttgccagtctggaattggaatctcaacccgaa
cctagtgatggtgcgtacat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_25275769_25276403
seq2: B6Ng01-220B16.b_49_684

seq1  GAATTCATTCTGTAGACCAGACTGGTCTCAAACTCAGAGATCTGCCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCTGTAGACCAGACTGGTCTCAAACTCAGAGATCTGCCTGCC  50

seq1  TCTGCCTCCTGAGTGCTGGGATTGAAGGTGTGCGCCACTATGACTTGCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCCTGAGTGCTGGGATTGAAGGTGTGCGCCACTATGACTTGCCC  100

seq1  ATTTGGTATAGTCTTAATGTTGGGCAATCAGTCTCTAGAACTTCTTCATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGTATAGTCTTAATGTTGGGCAATCAGTCTCTAGAACTTCTTCATC  150

seq1  TTGTAAAACTGAAACTGTACCCAGAATTTTCTTGTCTTCTTCCTCCTTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAAACTGAAACTGTACCCAGAATTTTCTTGTCTTCTTCCTCCTTCC  200

seq1  CCTGGCCACCACCTCTTACTTTCTGTCTTCATGGGTGCAGCCAGACTAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCCACCACCTCTTACTTTCTGTCTTCATGGGTGCAGCCAGACTAAG  250

seq1  GAGGCTAACCTCAAACAGCTTTATAGCTGAACTTGTGGGGGGTGGGGAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTAACCTCAAACAGCTTTATAGCTGAACTTGTGGGGGGTGGGGAAG  300

seq1  GAGTGGAGGCAGGCCATCACCACATAGCTGACAGGCCTGGAATACACTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGAGGCAGGCCATCACCACATAGCTGACAGGCCTGGAATACACTAT  350

seq1  GTAGACCATGCTGGCTTACATGTATGTATTTGCACTGCATACATGCCTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGACCATGCTGGCTTACATGTATGTATTTGCACTGCATACATGCCTAA  400

seq1  TGTAGGCAGAAGCCAGGAGCATATCAGATCCCCTGAAACTATAGTTATAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGCAGAAGCCAGGAGCATATCAGATCCCCTGAAACTATAGTTATAG  450

seq1  ATGGTATGAGCTGCCATGTGGTGGCTGGGGATCAAACCCTGGGTCCTCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTATGAGCTGCCATGTGGTGGCTGGGGATCAAACCCTGGGTCCTCTG  500

seq1  GAAGAGCAGCCAGTGTTCTTAACCACTGAGCGGTC-TCCAGTTCTGACCT  549
      |||||||||||||||||||||||||||| |||||| ||||||||||||||
seq2  GAAGAGCAGCCAGTGTTCTTAACCACTGTGCGGTCTTCCAGTTCTGACCT  550

seq1  TGAGCTTTTGATTCCTCTCTTTCCACCTAAATGCTGGGGTTACAAGACCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTTTTGATTCCTCTCTTTCCACCTAAATGCTGGGGTTACAAGACCT  600

seq1  ATGCTGGCATGCCTGGTTTCTGCAGTGCTGGAGATT  635
      ||||||||||||||||||||||||||||||||||||
seq2  ATGCTGGCATGCCTGGTTTCTGCAGTGCTGGAGATT  636