BAC Information

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BAC

Clone NameB6Ng01-220F09
Chromosome17 (Build37)
Map Location 49,904,078 - 50,112,281
singlet/doubletdoublet
Overlap geneKif6, EG668470
Upstream geneLrfn2, 1700008K24Rik, LOC672972, Mocs1, Daam2
Downstream geneRftn1, EG668475, EG628747, LOC100043818, Dazl, Plcl2, EG654432, Tbc1d5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-220F09.bB6Ng01-220F09.g
ACCGA035919GA035920
length1,160908
definitionB6Ng01-220F09.b B6Ng01-220F09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,904,078 - 49,905,219)(50,111,616 - 50,112,281)
sequence
gaattcattccccagaacccacattaaaaaaaaaaaagttaagtgttata
gtgcccacaggaggattcatcagctacctgagatcctaacttagttcatg
tctgcattaagccagtcatgttggtgcatgcctttaataccagcacttgg
gaattcagaggcaggtggatctctgtgagttgtgggccagcctggtctac
acatcgagttccaggccagacaagctatataataagactatcaaaacata
acaaaactccacaagcaaaacaacaaaaaccatctctcagttgctctgac
atcacaagccagactctgtcaccctgttcctgtgatagccatgtctagat
ggcttcccttgtagctgtgctgcagtttaccacacagatgcatgtgtgtg
agacgggaattgtgagtggaaacatctgtctgcagtctgcccggagtgtg
caggaaggcctctgattctgtcacactgcctctgtgcttgctgggtcccc
agagtcaatgactggagcctgatgcaggtgtcgctgacgcgctgaatgga
gatgtctcacacatttgtaagatccatcacatgaaaatagaaaccatgca
gttaaatccgaactcctggtgaagacgtgttttaaattgcatgggtccca
tgcaatattgcaagtatcgagatacacttctgctgaaacaaacaaacaaa
caaacaaaaaaaaaaaaaacattgactgtccaaaattctaaattaatcag
gagtcttaactatccccccagcctatccccccagaaaatcctaatcctgg
ctctgacctttgtaatattgctttattgcaggaatttcacaagccatctg
taaaggggccacttgtgtggggctcagtgacagtgtttgtctagcatgca
catgctttgagttcaatccctagaaccaaataaaaggacccgttctaaag
gaaaaatagggaagtctattgtagttggattagtggtgccaatcaattga
gggttttctttcttggtggatgactggagtcagcctcacatcattgttag
ccactggaatgctgcaacttctgatctttctttcttccctcccacttctt
ttctggcctcattcccatctaaattttccctggaaccgaggaaaaaatca
gggcgattcc

gaattcagacagcaggagtgtggtttgcacattcactgccagtttgaccg
ctcccttgttcatgcagtctgcttctagaacatactgaaagcctaccaac
tgctgagactcctgggataaagaagttgactctaaagaggaagacaaatc
cagccctattgaagtaacttgaaaacttgtcagcagtaggcaacaagagc
aacaaaactaacaagattttttattagactagggaaaaagataaagtact
aaaatgaatgaaagaagaatggactgtcagaatcagtcttacaaaatgaa
aagaattatataggatttttattaagaaccgcatgccaaagtttgactaa
cttaaatgaattgtacattaactaaatatctacctatatattcatatatt
ataaaaatttatatataatataatttatgtacattatgtaactatattta
atatataatataaaacatataaactaagcaggggctgcagaggacctgga
cttgattccaagcatccacatagtggttcacaacttcctacagctccagt
gttaggggatctgatgccctcttctggcctctgagagttcctgcttgcat
gtgattcatagaaactcacatagtaaaacacacatacaaataaagacatc
cttttaagaaagacataaactacgaaaatggcacaggaagcaaaaggaaa
cataagcagagttacatgaagtgaaaagactaaatgagcaattttaaaac
tcctgcaaaaaaacaaaaaacaaaaaaaccaaaaccaacccaagcccaga
tgatatcactggtggattctacctgatacataaagtaaaaggaattccag
ccttcttaaacttcacaaaacagaagagaacaatgatttggatttatcct
aatgaatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_49904078_49905219
seq2: B6Ng01-220F09.b_43_1202

seq1  GAATTCATTCCCCAGAACCCACATTAAAAAAAAAAAAGTTAAGTGTTATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCCCCAGAACCCACATTAAAAAAAAAAAAGTTAAGTGTTATA  50

seq1  GTGCCCACAGGAGGATTCATCAGCTACCTGAGATCCTAACTTAGTTCATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCCACAGGAGGATTCATCAGCTACCTGAGATCCTAACTTAGTTCATG  100

seq1  TCTGCATTAAGCCAGTCATGTTGGTGCATGCCTTTAATACCAGCACTTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCATTAAGCCAGTCATGTTGGTGCATGCCTTTAATACCAGCACTTGG  150

seq1  GAATTCAGAGGCAGGTGGATCTCTGTGAGTTGTGGGCCAGCCTGGTCTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGGCAGGTGGATCTCTGTGAGTTGTGGGCCAGCCTGGTCTAC  200

seq1  ACATCGAGTTCCAGGCCAGACAAGCTATATAATAAGACTATCAAAACATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCGAGTTCCAGGCCAGACAAGCTATATAATAAGACTATCAAAACATA  250

seq1  ACAAAACTCCACAAGCAAAACAACAAAAACCATCTCTCAGTTGCTCTGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACTCCACAAGCAAAACAACAAAAACCATCTCTCAGTTGCTCTGAC  300

seq1  ATCACAAGCCAGACTCTGTCACCCTGTTCCTGTGATAGCCATGTCTAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACAAGCCAGACTCTGTCACCCTGTTCCTGTGATAGCCATGTCTAGAT  350

seq1  GGCTTCCCTTGTAGCTGTGCTGCAGTTTACCACACAGATGCATGTGTGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCCCTTGTAGCTGTGCTGCAGTTTACCACACAGATGCATGTGTGTG  400

seq1  AGACGGGAATTGTGAGTGGAAACATCTGTCTGCAGTCTGCCCGGAGTGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACGGGAATTGTGAGTGGAAACATCTGTCTGCAGTCTGCCCGGAGTGTG  450

seq1  CAGGAAGGCCTCTGATTCTGTCACACTGCCTCTGTGCTTGCTGGGTCCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAGGCCTCTGATTCTGTCACACTGCCTCTGTGCTTGCTGGGTCCCC  500

seq1  AGAGTCAATGACTGGAGCCTGATGCAGGTGTCGCTGACGCGCTGAATGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCAATGACTGGAGCCTGATGCAGGTGTCGCTGACGCGCTGAATGGA  550

seq1  GATGTCTCACACATTTGTAAGATCCATCACATGAAAATAGAAACCATGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTCTCACACATTTGTAAGATCCATCACATGAAAATAGAAACCATGCA  600

seq1  GTTAAATCCGAACTCCTGGTGAAGACGTGTTTTAAATTGCATGGGTCCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAATCCGAACTCCTGGTGAAGACGTGTTTTAAATTGCATGGGTCCCA  650

seq1  TGCAATATTGCAAGTATCGAGATACACTTCTGCTGAAACAAACAAACAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATATTGCAAGTATCGAGATACACTTCTGCTGAAACAAACAAACAAA  700

seq1  CAAACAAAAAAAAAAAAAACATTGACTGTCCAAAATTCTAAATTAATCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAAAAAAAAAAAAAACATTGACTGTCCAAAATTCTAAATTAATCAG  750

seq1  GAGTCTTAACTATCCCCCCAGCCTATCCCCCCAGAAAATCCTAATCCTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTTAACTATCCCCCCAGCCTATCCCCCCAGAAAATCCTAATCCTGG  800

seq1  CTCTGACCTTTGTAATATTGCTTTATTGCAGGAA-TTCACAAGCCATCTG  849
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CTCTGACCTTTGTAATATTGCTTTATTGCAGGAATTTCACAAGCCATCTG  850

seq1  TAAA-GGGCCAC-TGTGTGGGGCTCAGTGACAGTGTTTGTCTAGCATGCA  897
      |||| ||||||| |||||||||||||||||||||||||||||||||||||
seq2  TAAAGGGGCCACTTGTGTGGGGCTCAGTGACAGTGTTTGTCTAGCATGCA  900

seq1  CAATGCTTTGAGTTCAATCCCTAGAACCAAATAAAAGGACCCGTTCTAAA  947
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  C-ATGCTTTGAGTTCAATCCCTAGAACCAAATAAAAGGACCCGTTCTAAA  949

seq1  GGAAAAATAGGGAAGTCTA-TGTAGTTGGATTAGT-GTGCAAATC-ATTG  994
      ||||||||||||||||||| ||||||||||||||| |||| |||| ||||
seq2  GGAAAAATAGGGAAGTCTATTGTAGTTGGATTAGTGGTGCCAATCAATTG  999

seq1  AGGG-TTTCTTTCTT-GTGGATGACTGGAGTCAGCCCTCACATCA-TGTT  1041
      |||| |||||||||| |||||||||||||||||| |||||||||| ||||
seq2  AGGGTTTTCTTTCTTGGTGGATGACTGGAGTCAG-CCTCACATCATTGTT  1048

seq1  AG-CACT-GAATGCTGCAACTTCTGATC-TTCCTTCTTCCCT-CCACTTC  1087
      || |||| |||||||||||||||||||| ||| ||||||||| |||||||
seq2  AGCCACTGGAATGCTGCAACTTCTGATCTTTCTTTCTTCCCTCCCACTTC  1098

seq1  -TTTCT-GCCTCATCCCAATTCTAATTT--CCTGAAAC--AGGAAAAAA-  1130
       ||||| ||||||| || ||   |||||  |||| |||  ||||||||| 
seq2  TTTTCTGGCCTCATTCCCATCTAAATTTTCCCTGGAACCGAGGAAAAAAT  1148

seq1  CAGGCGGATTCC  1142
      ||||  ||||||
seq2  CAGGGCGATTCC  1160


seq1: chr17_50111616_50112281
seq2: B6Ng01-220F09.g_67_732 (reverse)

seq1  ATGTCTTTCTTAAAAGGATGTCTTTATTTGTATGTGTGTTTTACTATGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTTTCTTAAAAGGATGTCTTTATTTGTATGTGTGTTTTACTATGTG  50

seq1  AGTTTCTATGAATCACATGCAAGCAGGAACTCTCAGAGGCCAGAAGAGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCTATGAATCACATGCAAGCAGGAACTCTCAGAGGCCAGAAGAGGG  100

seq1  CATCAGATCCCCTAACACTGGAGCTGTAGGAAGTTGTGAACCACTATGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGATCCCCTAACACTGGAGCTGTAGGAAGTTGTGAACCACTATGTG  150

seq1  GATGCTTGGAATCAAGTCCAGGTCCTCTGCAGCCCCTGCTTAGTTTATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTTGGAATCAAGTCCAGGTCCTCTGCAGCCCCTGCTTAGTTTATAT  200

seq1  GTTTTATATTATATATTAAATATAGTTACATAATGTACATAAATTATATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTATATTATATATTAAATATAGTTACATAATGTACATAAATTATATT  250

seq1  ATATATAAATTTTTATAATATATGAATATATAGGTAGATATTTAGTTAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATAAATTTTTATAATATATGAATATATAGGTAGATATTTAGTTAAT  300

seq1  GTACAATTCATTTAAGTTAGTCAAACTTTGGCATGCGGTTCTTAATAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAATTCATTTAAGTTAGTCAAACTTTGGCATGCGGTTCTTAATAAAA  350

seq1  ATCCTATATAATTCTTTTCATTTTGTAAGACTGATTCTGACAGTCCATTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTATATAATTCTTTTCATTTTGTAAGACTGATTCTGACAGTCCATTC  400

seq1  TTCTTTCATTCATTTTAGTACTTTATCTTTTTCCCTAGTCTAATAAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCATTCATTTTAGTACTTTATCTTTTTCCCTAGTCTAATAAAAAA  450

seq1  TCTTGTTAGTTTTGTTGCTCTTGTTGCCTACTGCTGACAAGTTTTCAAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTTAGTTTTGTTGCTCTTGTTGCCTACTGCTGACAAGTTTTCAAGT  500

seq1  TACTTCAATAGGGCTGGATTTGTCTTCCTCTTTAGAGTCAACTTCTTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCAATAGGGCTGGATTTGTCTTCCTCTTTAGAGTCAACTTCTTTAT  550

seq1  CCCAGGAGTCTCAGCAGTTGGTAGGCTTTCAGTATGTTCTAGAAGCAGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGAGTCTCAGCAGTTGGTAGGCTTTCAGTATGTTCTAGAAGCAGAC  600

seq1  TGCATGAACAAGGGAGCGGTCAAACTGGCAGTGAATGTGCAAACCACACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGAACAAGGGAGCGGTCAAACTGGCAGTGAATGTGCAAACCACACT  650

seq1  CCTGCTGTCTGAATTC  666
      ||||||||||||||||
seq2  CCTGCTGTCTGAATTC  666


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