BAC Information

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BAC

Clone NameB6Ng01-220K19
Chromosome17 (Build37)
Map Location 44,520,851 - 44,735,179
singlet/doubletdoublet
Overlap genenone
Upstream geneGpr116, Mep1a, LOC100043332, Pla2g7, Tdrd6, Slc25a27, Cyp39a1, Dscr1l1, Enpp5, Enpp4, Clic5
Downstream geneRunx2, Supt3h, 4930564C03Rik, EG210562, EG668314, Cdc5l, Spats1, EG668319, Aars2, Tcte1, Gm323, Nfkbie, Slc35b2, Hsp90ab1, Slc29a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-220K19.bB6Ng01-220K19.g
ACCGA036173GA036174
length1,103900
definitionB6Ng01-220K19.b B6Ng01-220K19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,734,080 - 44,735,179)(44,520,851 - 44,521,746)
sequence
gaattctctggaagcttttgctttgtaaacccctgtttggcagaaagatc
acagaatctgagctgaaaacacaatgtgtcccccctgcgcctgctccccg
tccggctgcttactgggaccctgaagcctcttgctttgccatgcagccct
gttctgaattatccagaggacaggctccaggttcctccagagggagggtc
caaagctctggtccctttgactttgaatgactgtagaaaaaaatattcat
cagtaggaggaacttttcactggctcctttgccatagaaaatagtaaaat
cctgaccacgagccaattttttaaaatggcatctttgttccatctttctg
actccttcttccccctgtcagagcccatcaatctgtcagattctattttg
ttttagcatatgagccatttgcaacaggctttcttctttcccaatgacct
atcagagatagtatagagcttcttgttctgagaggactcgggctaccctg
ctattatttctgggagactgaggtgcccgtggtaggggtctatgggattt
ggctcccagggccatatgggagactcattccaacaatcaccttcagtgta
ctttgttgtttttcctgtttacttcatactcaatatccctaagcatcctt
ttatcaacatccattcttgccatttggtgcagaaagagctcccagacctt
ttcctcctatgctgtacttgacatccaggtagcccagatggtacccgggg
gagagagagcttggtgatctaagatgctcttctcttggatggctttgaaa
gccgttgcttcaatctctctgcagtaagtcagatctagtagtggtcacag
aatgccgtgggcacctgctactttttgtaatgtttcttttgttttatctc
agttttcccagcggccccctgaagaggtacagtgtttctcttcccaactt
cactgataggaagctggggttcagacttgtcccaggttacagggctatta
agtctcaagcctagatctgcttgattgcaaaggcagcggctctaagtccc
gggatttgcacacaatctcctttcctcactctaattaatggaggcctatg
cga
gaattctaagccagaatagaccctgtcttccttatgctgcgttttttttg
ttttgttttgttttgttttttggcagagtattttatcaaagcaacacaaa
agtaactaagacaaataataatgtcacacagatgcctgctgcgaacattg
agtctagaaaataatacatgctatgtatgtaaattttaatttcctaataa
gtgcactacagggggaaaagtaaaaagacgtgaatttcatatagaggtaa
tattttgtcttacccccaacatttaagatacatcatttcaacatgtaatt
actgtaagctattactgaggtatctttcattctcttgtcatactaggtat
tttatatttgtagcatgttttagttcagacaagatccacttcaagtactc
agtggccatatgcaactgccgatgtctagaatatggttagaaatggcgtc
tgatagaaagacaatacacgtaaagagtgtagcttcgggtgagttagaaa
attgtatttgtatctgttacttgtcttgttgctgagaaaaaaaattatcc
aacagaagcaatttaaggaaagatttgttttagctcacagtttaataagg
catctggtccagaaaggtggggaaaatgtgtggaagcaggaagaagaggc
agttggtctcgttgcatccacaatcagggggcagagtgtggacaggaagt
agaacttgtctgtaagactttaagacacacccatactgacttacttcttc
cagaaagggactctgcctgcttcagattccagagccttataaaacagtac
cacccaccaagcaccaagtgttcagacttaagagcctatggagaagattc
ctttactcagaatataacgggggtgtgaggaagatgagggggagtgggtt

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_44734080_44735179
seq2: B6Ng01-220K19.b_45_1147 (reverse)

seq1  TCGCATA-GCCTCCATTATATAGA-TGA-GAAAGGAGATTGTGTGCAAAT  47
      ||||||| ||||||||||  |||| ||| |||||||||||||||||||||
seq2  TCGCATAGGCCTCCATTAATTAGAGTGAGGAAAGGAGATTGTGTGCAAAT  50

seq1  -CCGGGACTTAGGAGCGCTGCCTTTGCAATCAGGCAGATCTAGGCTTGAG  96
       |||||||||||   ||||||||||||||||| |||||||||||||||||
seq2  CCCGGGACTTAGAGCCGCTGCCTTTGCAATCAAGCAGATCTAGGCTTGAG  100

seq1  ACTTAATAGCCCTGTAACCTGGGACAAGTCTGAACCCCAGCTTCCTATCA  146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAATAGCCCTGTAACCTGGGACAAGTCTGAACCCCAGCTTCCTATCA  150

seq1  GTGAAGTTGGGAAGAGAAACACTGTAACCTCTTCAGGGGGCCGCTGGGAA  196
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GTGAAGTTGGGAAGAGAAACACTGT-ACCTCTTCAGGGGGCCGCTGGGAA  199

seq1  AACTGAGATAAAACAAAAGAAACATTACAAAAAGTAGCAGGTGCCCACGG  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAGATAAAACAAAAGAAACATTACAAAAAGTAGCAGGTGCCCACGG  249

seq1  CATTCTGTGACCACTACTAGATCTGACTTACTGCAGAGAGATTGAAGCAA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTGTGACCACTACTAGATCTGACTTACTGCAGAGAGATTGAAGCAA  299

seq1  CGGCTTTCAAAGCCATCCAAGAGAAGAGCATCTTAGATCACCAAGCTCTC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCTTTCAAAGCCATCCAAGAGAAGAGCATCTTAGATCACCAAGCTCTC  349

seq1  TCTCCCCCGGGTACCATCTGGGCTACCTGGATGTCAAGTACAGCATAGGA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCCCGGGTACCATCTGGGCTACCTGGATGTCAAGTACAGCATAGGA  399

seq1  GGAAAAGGTCTGGGAGCTCTTTCTGCACCAAATGGCAAGAATGGATGTTG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAGGTCTGGGAGCTCTTTCTGCACCAAATGGCAAGAATGGATGTTG  449

seq1  ATAAAAGGATGCTTAGGGATATTGAGTATGAAGTAAACAGGAAAAACAAC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAGGATGCTTAGGGATATTGAGTATGAAGTAAACAGGAAAAACAAC  499

seq1  AAAGTACACTGAAGGTGATTGTTGGAATGAGTCTCCCATATGGCCCTGGG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTACACTGAAGGTGATTGTTGGAATGAGTCTCCCATATGGCCCTGGG  549

seq1  AGCCAAATCCCATAGACCCCTACCACGGGCACCTCAGTCTCCCAGAAATA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAATCCCATAGACCCCTACCACGGGCACCTCAGTCTCCCAGAAATA  599

seq1  ATAGCAGGGTAGCCCGAGTCCTCTCAGAACAAGAAGCTCTATACTATCTC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCAGGGTAGCCCGAGTCCTCTCAGAACAAGAAGCTCTATACTATCTC  649

seq1  TGATAGGTCATTGGGAAAGAAGAAAGCCTGTTGCAAATGGCTCATATGCT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGGTCATTGGGAAAGAAGAAAGCCTGTTGCAAATGGCTCATATGCT  699

seq1  AAAACAAAATAGAATCTGACAGATTGATGGGCTCTGACAGGGGGAAGAAG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAATAGAATCTGACAGATTGATGGGCTCTGACAGGGGGAAGAAG  749

seq1  GAGTCAGAAAGATGGAACAAAGATGCCATTTTAAAAAATTGGCTCGTGGT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCAGAAAGATGGAACAAAGATGCCATTTTAAAAAATTGGCTCGTGGT  799

seq1  CAGGATTTTACTATTTTCTATGGCAAAGGAGCCAGTGAAAAGTTCCTCCT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATTTTACTATTTTCTATGGCAAAGGAGCCAGTGAAAAGTTCCTCCT  849

seq1  ACTGATGAATATTTTTTTCTACAGTCATTCAAAGTCAAAGGGACCAGAGC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATGAATATTTTTTTCTACAGTCATTCAAAGTCAAAGGGACCAGAGC  899

seq1  TTTGGACCCTCCCTCTGGAGGAACCTGGAGCCTGTCCTCTGGATAATTCA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGACCCTCCCTCTGGAGGAACCTGGAGCCTGTCCTCTGGATAATTCA  949

seq1  GAACAGGGCTGCATGGCAAAGCAAGAGGCTTCAGGGTCCCAGTAAGCAGC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGGGCTGCATGGCAAAGCAAGAGGCTTCAGGGTCCCAGTAAGCAGC  999

seq1  CGGACGGGGAGCAGGCGCAGGGGGGACACATTGTGTTTTCAGCTCAGATT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGACGGGGAGCAGGCGCAGGGGGGACACATTGTGTTTTCAGCTCAGATT  1049

seq1  CTGTGATCTTTCTGCCAAACAGGGGTTTACAAAGCAAAAGCTTCCAGAGA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGATCTTTCTGCCAAACAGGGGTTTACAAAGCAAAAGCTTCCAGAGA  1099

seq1  ATTC  1100
      ||||
seq2  ATTC  1103

seq1: chr17_44520851_44521746
seq2: B6Ng01-220K19.g_67_965

seq1  GAATTCTAAGCCAGAATAGACCCTGTCTTCCTTATGCTGCGTTTTTTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAGCCAGAATAGACCCTGTCTTCCTTATGCTGCGTTTTTTTTG  50

seq1  TTTTGTTTTGTTTTGTTTTTTGGCAGAGTATTTTATCAAAGCAACACAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTTGTTTTGTTTTTTGGCAGAGTATTTTATCAAAGCAACACAAA  100

seq1  AGTAACTAAGACAAATAATAATGTCACACAGATGCCTGCTGCGAACATTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAACTAAGACAAATAATAATGTCACACAGATGCCTGCTGCGAACATTG  150

seq1  AGTCTAGAAAATAATACATGCTATGTATGTAAATTTTAATTTCCTAATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTAGAAAATAATACATGCTATGTATGTAAATTTTAATTTCCTAATAA  200

seq1  GTGCACTACAGGGGGAAAAGTAAAAAGACGTGAATTTCATATAGAGGTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCACTACAGGGGGAAAAGTAAAAAGACGTGAATTTCATATAGAGGTAA  250

seq1  TATTTTGTCTTACCCCCAACATTTAAGATACATCATTTCAACATGTAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTGTCTTACCCCCAACATTTAAGATACATCATTTCAACATGTAATT  300

seq1  ACTGTAAGCTATTACTGAGGTATCTTTCATTCTCTTGTCATACTAGGTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTAAGCTATTACTGAGGTATCTTTCATTCTCTTGTCATACTAGGTAT  350

seq1  TTTATATTTGTAGCATGTTTTAGTTCAGACAAGATCCACTTCAAGTACTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATTTGTAGCATGTTTTAGTTCAGACAAGATCCACTTCAAGTACTC  400

seq1  AGTGGCCATATGCAACTGCCGATGTCTAGAATATGGTTAGAAATGGCGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCCATATGCAACTGCCGATGTCTAGAATATGGTTAGAAATGGCGTC  450

seq1  TGATAGAAAGACAATACACGTAAAGAGTGTAGCTTCGGGTGAGTTAGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGAAAGACAATACACGTAAAGAGTGTAGCTTCGGGTGAGTTAGAAA  500

seq1  ATTGTATTTGTATCTGTTACTTGTCTTGTTGCTGAGAAAAAAAATTATCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTATTTGTATCTGTTACTTGTCTTGTTGCTGAGAAAAAAAATTATCC  550

seq1  AACAGAAGCAATTTAAGGAAAGATTTGTTTTAGCTCACAGTTTAATAAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAAGCAATTTAAGGAAAGATTTGTTTTAGCTCACAGTTTAATAAGG  600

seq1  CATCTGGTCCAGAAAGGTGGGGAAAATGTGTGGAAGCAGGAAGAAGAGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGGTCCAGAAAGGTGGGGAAAATGTGTGGAAGCAGGAAGAAGAGGC  650

seq1  AGTTGGTCTCGTTGCATCCACAATCAGGGGGCAGAGTGTGGACAGGAAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGTCTCGTTGCATCCACAATCAGGGGGCAGAGTGTGGACAGGAAGT  700

seq1  AGAACTTGTCTGTAAGACTTTAAGACACACCCATACTGACTTACTTCTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTTGTCTGTAAGACTTTAAGACACACCCATACTGACTTACTTCTTC  750

seq1  CAGAAAGGGACTCTGCCTGCTTCAGATTCCAGAGCCTTATAAAACAGTAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAGGGACTCTGCCTGCTTCAGATTCCAGAGCCTTATAAAACAGTAC  800

seq1  CACCCACCAAGCACCAAGTGTTCAGACTTAAGAGCCTATGGAGAAGATTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCACCAAGCACCAAGTGTTCAGACTTAAGAGCCTATGGAGAAGATTC  850

seq1  C-TTACTCAGAATATAAC-GGGGTGTGAGGAAGATGA-GGGGAGTGGGT  896
      | |||||||||||||||| |||||||||||||||||| |||||||||||
seq2  CTTTACTCAGAATATAACGGGGGTGTGAGGAAGATGAGGGGGAGTGGGT  899