BAC Information

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BAC

Clone NameB6Ng01-220O20
Chromosome17 (Build37)
Map Location 80,630,467 - 80,790,444
singlet/doubletdoublet
Overlap geneDhx57, Morn2
Upstream geneLOC383277, Cdc42ep3, LOC639964, AW061290, Cyp1b1, EG668821, Arl6ip2, LOC625074, Hnrpll, Gpx4-ps, Galm, Sfrs7, 4930560E09Rik, Gemin6
Downstream geneSos1, Cdkl4, F420015M19Rik, Map4k3, LOC100043697, C230072F16Rik, LOC675572, EG668830, Tmem178, Thumpd2, LOC100043700, LOC100043704, Slc8a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-220O20.bB6Ng01-220O20.g
ACCGA036363GA036364
length8691,128
definitionB6Ng01-220O20.b B6Ng01-220O20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,630,467 - 80,631,328)(80,789,318 - 80,790,444)
sequence
gaattcatacaggagggcggagaagcatctgattaccaggtgcttggttc
tgggtccttattgtgtgggacggtcccttaaaatggtcccttagtgctca
tcatgtggtggcctcctggtgtgttttggtgcctgttttccaaagagcat
gccacactttgccattcttcctggcagtcttagagacaacccctgaaacc
agtgggtttagagacaacccctgaaaccagtgggtttccgggaaacttgg
tggagagaagagttactgagcctagaaattaaagttcttgtttcggtttt
acatagtagccaaagtctactaggttggattttgttcagttagcatggag
ataagataagggtgtgtgtgtgtgttttatacatcaaaatgtggccctaa
ggatgataactatctgcaagagtcaagttataagtgattttaaaaaagat
cagaaatgagagatgatatttttaaattgttctccatccacacatatttg
tacatatcacttcttggtctttacacttcagtacttagcagcttactcga
tagcacatgcttagtatatctatttgtgcacatgcctgcacctgtatgta
tgtgtgtgtgtgtgcgcgcgcgagtgtgcgagtgtgtgtgtgtgtcagag
gacagcatgtacaagtttcagttggtcttctccctctgttgttttgggtc
tagggatccagctcaagtcaggtttcggcagctttggcaacttcccttta
ccccagttgagcagtctgtcagcaccacagcacacgtttctaagagttgc
tctggcggaggtttcgtgttagtattctaaaattgtttacatcttaagat
atgtcctactggcacaatt
gaattccacttcaggagtttcataaacaatctagcttcaatctcagatga
gcttaaactcttacaaaatgaaatagcccagcaaaagaaccttagcattg
taacccacacatccctttctcagatggtccaattctgaactccgagaaat
aacatgctccttgcgtgggcttgtatgtagactcttcaaggctgcaagtc
actcctgggacctcctagcaggaaagtctgcatctctggtaaagtggctt
cattctcctatcacccggatcatttcctgcagacaccagtggtcagaggg
ctggagaccagaggtagagcaactgtctcaccttgacttcatccctaact
cgtcattaagccaaatatcacggtcactaaagcccccacctcccctttca
gcttacagtgctatctagaaagattatggaatgcgccagaaggaaacaga
gtaacccattactcttttcattggagaagtgttttagtatcagtgagagt
ggcatgatatctttaattggttctgaagatgtctgtatcttctcctctga
ttggcgttttccttaaacagaaatgtgagggactgagctgacggtgctga
agtttggccatatgcaaagtggaagtgatttatgaagcattaaaaaaaaa
agcaagcatagccttgcccttgagaggacttgctgtcttaataggaaggt
aagacaaatctcaaaagatgaagtagtcacaccacacaggatctcagaaa
gatgaggccttcacgtggatcttaaggatccgctcagcgggaagaggcag
agcgaggctgtgaagctgactgagctggagggcatggctcagaggcggtg
gagagcctgggttagttgcattcctttatgcagaaccgcggtcagaaact
aaaagtccttatggagagtgaccctaaaccaccggtgatggcgaggactt
gggaatctgagcacagacagagctgtgtttggtatgtggatgtgctgggg
atctgggagcagagccgctcagaagtgccaggaagactgcactccactct
agcaggtcagttatcagaaggtagggaccgactgggtctacattacttat
tagcttatatatattcatatagtggtct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_80630467_80631328
seq2: B6Ng01-220O20.b_49_917

seq1  GAATTCATACAGGAGGGCGGAGAAGCATCTGATTACCAGGTGCTTGGTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATACAGGAGGGCGGAGAAGCATCTGATTACCAGGTGCTTGGTTC  50

seq1  TGGGTCCTTATTGTGTGGGACGGTCCCTTAAAATGGTCCCTTAGTGCTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCCTTATTGTGTGGGACGGTCCCTTAAAATGGTCCCTTAGTGCTCA  100

seq1  TCATGTGGTGGCCTCCTGGTGTGTTTTGGTGCCTGTTTTCCAAAGAGCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTGGTGGCCTCCTGGTGTGTTTTGGTGCCTGTTTTCCAAAGAGCAT  150

seq1  GCCACACTTTGCCATTCTTCCTGGCAGTCTTAGAGACAACCCCTGAAACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACACTTTGCCATTCTTCCTGGCAGTCTTAGAGACAACCCCTGAAACC  200

seq1  AGTGGGTTTAGAGACAACCCCTGAAACCAGTGGGTTTCCGGGAAACTTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGTTTAGAGACAACCCCTGAAACCAGTGGGTTTCCGGGAAACTTGG  250

seq1  TGGAGAGAAGAGTTACTGAGCCTAGAAATTAAAGTTCTTGTTTCGGTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAGAAGAGTTACTGAGCCTAGAAATTAAAGTTCTTGTTTCGGTTTT  300

seq1  ACATAGTAGCCAAAGTCTACTAGGTTGGATTTTGTTCAGTTAGCATGGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGTAGCCAAAGTCTACTAGGTTGGATTTTGTTCAGTTAGCATGGAG  350

seq1  ATAAGATAAGGGTGTGTGTGTGTGTTTTATACATCAAAATGTGGCCCTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGATAAGGGTGTGTGTGTGTGTTTTATACATCAAAATGTGGCCCTAA  400

seq1  GGATGATAACTATCTGCAAGAGTCAAGTTATAAGTGATTTTAAAAAAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGATAACTATCTGCAAGAGTCAAGTTATAAGTGATTTTAAAAAAGAT  450

seq1  CAGAAATGAGAGATGATATTTTTAAATTGTTCTCCATCCACACATATTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAATGAGAGATGATATTTTTAAATTGTTCTCCATCCACACATATTTG  500

seq1  TACATATCACTTCTTGGTCTTTACACTTCAGTACTTAGCAGCTTACTCGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATATCACTTCTTGGTCTTTACACTTCAGTACTTAGCAGCTTACTCGA  550

seq1  TAGCACATGCTTAGTATATCTATTTGTGCACATGCCTGCACCTGTATGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCACATGCTTAGTATATCTATTTGTGCACATGCCTGCACCTGTATGTA  600

seq1  TGTGTGTGTGTGTGCGCGCGCGAGTGTGCGAGTGTGTGTGTGTGTCAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGCGCGCGCGAGTGTGCGAGTGTGTGTGTGTGTCAGAG  650

seq1  GACAGCATGTACAAGTTTCAGTTGGTCTTCTCCCTCTGTTG-TTTGGGTC  699
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GACAGCATGTACAAGTTTCAGTTGGTCTTCTCCCTCTGTTGTTTTGGGTC  700

seq1  TAGGGATCCAGCTCAAGTCAGG-TTCGGCAGCTTTGGCAACTTCCCTT--  746
      |||||||||||||||||||||| |||||||||||||||||||||||||  
seq2  TAGGGATCCAGCTCAAGTCAGGTTTCGGCAGCTTTGGCAACTTCCCTTTA  750

seq1  ACCCAG-TGAGCAGTCTGTCAGCACCACAGCACACGTTTCTAAGAGTTGC  795
       ||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGTTGAGCAGTCTGTCAGCACCACAGCACACGTTTCTAAGAGTTGC  800

seq1  TCTGGCGGAGGTTTCGTGTTAGTATTCTAAAA-TGTTTACATCTTTAGAT  844
      |||||||||||||||||||||||||||||||| |||||||||||| ||||
seq2  TCTGGCGGAGGTTTCGTGTTAGTATTCTAAAATTGTTTACATCTTAAGAT  850

seq1  ATGT-CTACTGGCACAATT  862
      |||| ||||||||||||||
seq2  ATGTCCTACTGGCACAATT  869

seq1: chr17_80789318_80790444
seq2: B6Ng01-220O20.g_67_1194 (reverse)

seq1  AGACCACTAT-TGTATATTATTAAGCTAAT-AGTAATGTGG--CCAGTCT  46
      |||||||||| || ||||   ||||||||| |||||||| |  |||||| 
seq2  AGACCACTATATGAATATATATAAGCTAATAAGTAATGTAGACCCAGTC-  49

seq1  GGGTCCCTACTTCCTGATAACTG-GCTGCT-GGGT-GAGTGCAGTTCTTC  93
       ||||||||| | ||||||||||  ||||| | || |||||||| |||||
seq2  -GGTCCCTACCTTCTGATAACTGACCTGCTAGAGTGGAGTGCAG-TCTTC  97

seq1  CT-GCACCTCTGAGCGCTCCTGCTTCCCAGATCCCCAGCACATCCACATA  142
      || |||| ||||||||   |||| ||||||||||||||||||||||||||
seq2  CTGGCACTTCTGAGCGGCTCTGC-TCCCAGATCCCCAGCACATCCACATA  146

seq1  CCAAACACAGCTCTTGTCTGTGCTCAGATTCCCAAGTCCTCGCCATCACC  192
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CCAAACACAGCTC-TGTCTGTGCTCAGATTCCCAAGTCCTCGCCATCACC  195

seq1  GGTGGTTTAGGGTCACTCTCCATAAGGACTTTTAGTTTTCTGACCGCGGT  242
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GGTGGTTTAGGGTCACTCTCCATAAGGACTTTTAG-TTTCTGACCGCGGT  244

seq1  TCTGCATAAAGGAATGCAACTAACCCAGGCTCTCCACCGCCTCTGAGCCA  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCATAAAGGAATGCAACTAACCCAGGCTCTCCACCGCCTCTGAGCCA  294

seq1  TGCCCTTCCAGCTCAGTCAGCTTCACAGCCTCGCTCTGCCTCTTCCCGCT  342
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCC-TCCAGCTCAGTCAGCTTCACAGCCTCGCTCTGCCTCTTCCCGCT  343

seq1  GAGCGGATCCTTAAGATCCACGTGAAGGCCTCATCTTTCTGAGATCCTGT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCGGATCCTTAAGATCCACGTGAAGGCCTCATCTTTCTGAGATCCTGT  393

seq1  GTGGTGTGACTACTTCATCTTTTGAGATTTGTCTTACCTTCCTATTAAGA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGTGACTACTTCATCTTTTGAGATTTGTCTTACCTTCCTATTAAGA  443

seq1  CAGCAAGTCCTCTCAAGGGCAAGGCTATGCTTGCTTTTTTTTTTAATGCT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAGTCCTCTCAAGGGCAAGGCTATGCTTGCTTTTTTTTTTAATGCT  493

seq1  TCATAAATCACTTCCACTTTGCATATGGCCAAACTTCAGCACCGTCAGCT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAATCACTTCCACTTTGCATATGGCCAAACTTCAGCACCGTCAGCT  543

seq1  CAGTCCCTCACATTTCTGTTTAAGGAAAACGCCAATCAGAGGAGAAGATA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCCTCACATTTCTGTTTAAGGAAAACGCCAATCAGAGGAGAAGATA  593

seq1  CAGACATCTTCAGAACCAATTAAAGATATCATGCCACTCTCACTGATACT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACATCTTCAGAACCAATTAAAGATATCATGCCACTCTCACTGATACT  643

seq1  AAAACACTTCTCCAATGAAAAGAGTAATGGGTTACTCTGTTTCCTTCTGG  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACACTTCTCCAATGAAAAGAGTAATGGGTTACTCTGTTTCCTTCTGG  693

seq1  CGCATTCCATAATCTTTCTAGATAGCACTGTAAGCTGAAAGGGGAGGTGG  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCATTCCATAATCTTTCTAGATAGCACTGTAAGCTGAAAGGGGAGGTGG  743

seq1  GGGCTTTAGTGACCGTGATATTTGGCTTAATGACGAGTTAGGGATGAAGT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTTAGTGACCGTGATATTTGGCTTAATGACGAGTTAGGGATGAAGT  793

seq1  CAAGGTGAGACAGTTGCTCTACCTCTGGTCTCCAGCCCTCTGACCACTGG  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTGAGACAGTTGCTCTACCTCTGGTCTCCAGCCCTCTGACCACTGG  843

seq1  TGTCTGCAGGAAATGATCCGGGTGATAGGAGAATGAAGCCACTTTACCAG  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGCAGGAAATGATCCGGGTGATAGGAGAATGAAGCCACTTTACCAG  893

seq1  AGATGCAGACTTTCCTGCTAGGAGGTCCCAGGAGTGACTTGCAGCCTTGA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCAGACTTTCCTGCTAGGAGGTCCCAGGAGTGACTTGCAGCCTTGA  943

seq1  AGAGTCTACATACAAGCCCACGCAAGGAGCATGTTATTTCTCGGAGTTCA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCTACATACAAGCCCACGCAAGGAGCATGTTATTTCTCGGAGTTCA  993

seq1  GAATTGGACCATCTGAGAAAGGGATGTGTGGGTTACAATGCTAAGGTTCT  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGGACCATCTGAGAAAGGGATGTGTGGGTTACAATGCTAAGGTTCT  1043

seq1  TTTGCTGGGCTATTTCATTTTGTAAGAGTTTAAGCTCATCTGAGATTGAA  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTGGGCTATTTCATTTTGTAAGAGTTTAAGCTCATCTGAGATTGAA  1093

seq1  GCTAGATTGTTTATGAAACTCCTGAAGTGGAATTC  1127
      |||||||||||||||||||||||||||||||||||
seq2  GCTAGATTGTTTATGAAACTCCTGAAGTGGAATTC  1128