BAC Information

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BAC

Clone NameB6Ng01-222B13
Chromosome17 (Build37)
Map Location 40,612,344 - 40,713,315
singlet/doubletdoublet
Overlap geneLOC100043756, EG433107
Upstream geneLOC100043300, EG668200, LOC672857, LOC627695, LOC634967, Pgk2, Crisp3, Crisp1, LOC668229
Downstream geneEG619517, Crisp2, Rhag, 9130008F23Rik, EG435528, Cenpq, Mut, Ldha-ps3, LOC627577
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-222B13.bB6Ng01-222B13.g
ACCGA037214GA037215
length1,2161,151
definitionB6Ng01-222B13.b B6Ng01-222B13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,612,344 - 40,613,587)(40,712,168 - 40,713,315)
sequence
gaattcttaaaaaaaaatattttaaagcaacaccaagagaaacagatcca
atgtatttgacaaactcagcaagattttctggtacagaatgtttgtaaac
taaattcaacaacaacagatcaaaaaataaaaagtatagtataattcagt
ggtttcattccaaagaagcaagaatgtttcaacatgtcagaattaatgga
tgtaataagccgcaatagtcagtgttaatgatcaacgtgacagaatccag
aattatgcagattacgagcctttgggcatgcatgtgtaggattattttag
ctacattagttgatgtgggaagactcatattgattatataaggtggagaa
agcaaactgatcacaagcttgcatgtttgcctttgtacaccccctgtttc
cacttagtggatgatttacatccagtattttgaagggttattttttttct
ccttaagaaggtctgctttaaaatattttttaaaaaatgtaatcaggaaa
ccatgtatatttctttgaaccatgttgctgcaggctcttatgggcaagga
agctttgctgctttttagtattgatgagtccagactcataattgagaaag
agaaatattgaaggcttctccaacaacctcttcctatcacacccagaaaa
gaaacagtcttaacaggaagtcattgaaaccatcaattgtatgacagtag
gaatgaattcaaataacataaaatctttagatgacagtaagtaagtttag
gctcactgactacaccaacttagagttagtaaagcatagtgaccatgaag
tgggcataaatttcagtgtgcagaagcatatggaaatgattatatcatga
aatttcatatgcacataaaatattctaataatatattaaaacagtattat
gaaagaacacaggtggaaattctgggataaacactcaaaggttgtcctct
gatttctatacatgtgctatggacataggctttgtacccaaacataggac
atgagagagagagagagagagaggagagagagagagagagagagagagag
aaagacatgtgaaatcttattagctctgtacaatatttgaacttgaaaat
taaagcaatgaatgtttattcataaatgtgtcacaaaggatatatgtcac
aatctaagtccttcattaactcaatttaatgaattacaggacctatggta
ccatcttacctgaaaa

gaattcctaggttctttctgcacaggttcattcccctgaacgcagaggaa
attgggggggcgggggaggagagattcagtatctatattttttgctgtgt
atcatcccgtattttgctactttctgtttacagcttacatctgtactgga
tgtaaggtagggagccagggttgtgattatacagatatagttataccaaa
gtcttagatgtagcattttgtgaagagcaagtgcaaaatttaccaatatt
tccccttaaacttgaatttatttttaatttccccttcattatgaaatatg
aacacaatgaattgcatatctatgccatttaaactccatcttttgttaga
tgtgttgtttcctattttcattaaggtttaaacacccactgcttattgca
catatatcccttctcaattagtcactacatcctacatcctttagacactg
ctaatgaccacttaacgatacattcttctttatttcggaacacataaatg
tcttacttagtacattaaacttgttgtgtctaattttgtatactgtgtat
acattagaaattccccaaaaaacttttaaatataaaatttgctttagaat
tttatcactgacaatagagaaccactatcagcattgatctactacatttt
acatttttttctatcattcccttcccttcccccccttcaagtcctcccat
gtactctctaatgctctctttcaagtttaccgcctgctttttcattgcca
ttatgactaaactttgagttaagacatccccacagggaaatgaaatgtct
tatttgctggtcctttcccgatcagtggccaggatctagaaaacacctgg
atctacctggatcctcatgcattcattgccaaaatctttcagagtggcag
tcttttattcttgttcttggtgggcctatatattgggaattataataatg
ctttttattcacatgacatggagagactaaagtttaaggaaaaaaatgtg
ccctcagtgttaatcataggcagatgatgaaatgcattcaatgtgagttt
tcttagtcatcagattactgtattaacttctgtaataactctggttgaca
ggttaagggttttcaacttgccctgacagtcaatcagtgttcctgtatat
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_40612344_40613587
seq2: B6Ng01-222B13.b_48_1263

seq1  GAATTCTTAAAAAAAAATATTTTAAAGCAACACCAAGAGAAACAGATCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAAAAAAAAATATTTTAAAGCAACACCAAGAGAAACAGATCCA  50

seq1  ATGTATTTGACAAACTCAGCAAGATTTTCTGGTACAGAATGTTTGTAAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATTTGACAAACTCAGCAAGATTTTCTGGTACAGAATGTTTGTAAAC  100

seq1  TAAATTCAACAACAACAGATCAAAAAATAAAAAGTATAGTATAATTCAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTCAACAACAACAGATCAAAAAATAAAAAGTATAGTATAATTCAGT  150

seq1  GGTTTCATTCCAAAGAAGCAAGAATGTTTCAACATGTCAGAATTAATGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCATTCCAAAGAAGCAAGAATGTTTCAACATGTCAGAATTAATGGA  200

seq1  TGTAATAAGCCGCAATAGTCAGTGTTAATGATCAACGTGACAGAATCCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATAAGCCGCAATAGTCAGTGTTAATGATCAACGTGACAGAATCCAG  250

seq1  AATTATGCAGATTACGAGCCTTTGGGCATGCATGTGTAGGATTATTTTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATGCAGATTACGAGCCTTTGGGCATGCATGTGTAGGATTATTTTAG  300

seq1  CTACATTAGTTGATGTGGGAAGACTCATATTGATTATATAAGGTGGAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATTAGTTGATGTGGGAAGACTCATATTGATTATATAAGGTGGAGAA  350

seq1  AGCAAACTGATCACAAGCTTGCATGTTTGCCTTTGTACACCCCCTGTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAACTGATCACAAGCTTGCATGTTTGCCTTTGTACACCCCCTGTTTC  400

seq1  CACTTAGTGGATGATTTACATCCAGTATTTTGAAGGGTTATTTTTTTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTAGTGGATGATTTACATCCAGTATTTTGAAGGGTTATTTTTTTTCT  450

seq1  CCTTAAGAAGGTCTGCTTTAAAATATTTTTTAAAAAATGTAATCAGGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAAGAAGGTCTGCTTTAAAATATTTTTTAAAAAATGTAATCAGGAAA  500

seq1  CCATGTATATTTCTTTGAACCATGTTGCTGCAGGCTCTTATGGGCAAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTATATTTCTTTGAACCATGTTGCTGCAGGCTCTTATGGGCAAGGA  550

seq1  AGCTTTGCTGCTTTTTAGTATTGATGAGTCCAGACTCATAATTGAGAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTGCTGCTTTTTAGTATTGATGAGTCCAGACTCATAATTGAGAAAG  600

seq1  AGAAATATTGAAGGCTTCTCCAACAACCTCTTCCTATCACACCCAGAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATATTGAAGGCTTCTCCAACAACCTCTTCCTATCACACCCAGAAAA  650

seq1  GAAACAGTCTTAACAGGAAGTCATTGAAACCATCAATTGTATGACAGTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAGTCTTAACAGGAAGTCATTGAAACCATCAATTGTATGACAGTAG  700

seq1  GAATGAATTCAAATAACATAAAATCTTTAGATGACAGTAAGTAAGTTTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGAATTCAAATAACATAAAATCTTTAGATGACAGTAAGTAAGTTTAG  750

seq1  GCTCACTGACTACACCAACTTAGAGTTAGTAAAGCATAGTGACCATGAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACTGACTACACCAACTTAGAGTTAGTAAAGCATAGTGACCATGAAG  800

seq1  TGGGCATAAATTTCAGTGTGCAGAAGCATATGGAAATGATTATATCATGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCATAAATTTCAGTGTGCAGAAGCATATGGAAATGATTATATCATGA  850

seq1  AATTTCATATGCACATAAAATATTCTAATAATATATTAAAACAGTATTAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCATATGCACATAAAATATTCTAATAATATATTAAAACAGTATTAT  900

seq1  GAAAGAACACAGGTGGAAATTCTGGGATAAACACTCAAAGGTTGTCCTCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAACACAGGTGGAAATTCTGGGATAAACACTCAAAGGTTGTCCTCT  950

seq1  GATTTCTATACATGTGCTATGGGACATAGGCTTTGTACCCAAACATAGGA  1000
      |||||||||||||||||||| |||||||||||||||||||||||||||| 
seq2  GATTTCTATACATGTGCTAT-GGACATAGGCTTTGTACCCAAACATAGG-  998

seq1  ACATGGAGAGAGAGAGAGAGAGAGAGGGAGAGAGAGAGAGAGAGAGAGAG  1050
      |||| |||||||||||||||||||||   |||||||||||||||||||||
seq2  ACAT-GAGAGAGAGAGAGAGAGAGAG---GAGAGAGAGAGAGAGAGAGAG  1044

seq1  AGAAGAGAAAGACAATGTGAAATCT--ATAGCTCTGTACAAATATTTGAA  1098
      || |||||||||| |||||||||||   ||||||||||| |||||||| |
seq2  AG-AGAGAAAGAC-ATGTGAAATCTTATTAGCTCTGTAC-AATATTTG-A  1090

seq1  ACTATGAAAAATTAAAAGCCAAATGAAAATGTTTATCAATTAAATGTGTC  1148
      ||| ||||||  | |||||  ||||  |||||||||  | ||||||||||
seq2  ACT-TGAAAA--TTAAAGC--AATG--AATGTTTATTCA-TAAATGTGTC  1132

seq1  ACAAAAGGAATATTAATGTCAACAATCTAAAAGTCCTTTCATTTTTACTC  1198
      |||||  | ||||  ||||| |||||||  |||||| ||||  || ||||
seq2  ACAAA--GGATAT--ATGTC-ACAATCT--AAGTCC-TTCA--TTAACTC  1172

seq1  AAATTTAATAGGATTTACAGGGACTA-GGTACCATCTTACCTAAAAA  1244
       ||||||||  || |||||||  ||| ||||||||||||||| ||||
seq2  -AATTTAAT--GAATTACAGGACCTATGGTACCATCTTACCTGAAAA  1216


seq1: chr17_40712168_40713315
seq2: B6Ng01-222B13.g_67_1217 (reverse)

seq1  AATATACAGGGAAACTGATGGACTGTCAGGCAAAGTTGAAAAACCTAAAC  50
      |||||||||| | |||||| ||||||||||  |||||||||| ||| |||
seq2  AATATACAGGAACACTGATTGACTGTCAGGGCAAGTTGAAAACCCTTAAC  50

seq1  TGGTCAACAGAAGTTA-TACAGA--GTAATACAGTAATCTGATGACT-AG  96
        ||||||   ||||| ||||||   ||||||||||||||||||||| ||
seq2  CTGTCAACCAGAGTTATTACAGAAGTTAATACAGTAATCTGATGACTAAG  100

seq1  AAAACTCACATTGAATGCATTTCATCATCTGCCTATGATTAAAACACTGA  146
      ||||||||||||||||||||||||||||||||||||||||  ||||||||
seq2  AAAACTCACATTGAATGCATTTCATCATCTGCCTATGATT--AACACTGA  148

seq1  GGGCACATTTTTTTCC-TAAACTTTAGTCTCTCCATGTCATGTGAATAAA  195
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GGGCACATTTTTTTCCTTAAACTTTAGTCTCTCCATGTCATGTGAATAAA  198

seq1  AAGCATTATTTATAATTCCCAATATATAGGCCCACCAAGAACAAGAAT-A  244
      |||||||| ||||||||||||||||||||||||||||||||||||||| |
seq2  AAGCATTA-TTATAATTCCCAATATATAGGCCCACCAAGAACAAGAATAA  247

seq1  AAGACTGCCACTCTGAAAGATTTTGGCAATGAATGCATGAGGATCCAGGT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTGCCACTCTGAAAGATTTTGGCAATGAATGCATGAGGATCCAGGT  297

seq1  AGATCCAGGTGTTTTCTAGATCCTGGCCACTGATCGGGAAAGGACCAGCA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCAGGTGTTTTCTAGATCCTGGCCACTGATCGGGAAAGGACCAGCA  347

seq1  AATAAGACATTTCATTTCCCTGTGGGGATGTCTTAACTCAAAGTTTAGTC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGACATTTCATTTCCCTGTGGGGATGTCTTAACTCAAAGTTTAGTC  397

seq1  ATAATGGCAATGAAAAAGCAGGCGGTAAACTTGAAAGAGAGCATTAGAGA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGGCAATGAAAAAGCAGGCGGTAAACTTGAAAGAGAGCATTAGAGA  447

seq1  GTACATGGGAGGACTTGAAGGGGGGGAAGGGAAGGGAATGATAGAAAAAA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACATGGGAGGACTTGAAGGGGGGGAAGGGAAGGGAATGATAGAAAAAA  497

seq1  ATGTAAAATGTAGTAGATCAATGCTGATAGTGGTTCTCTATTGTCAGTGA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAAATGTAGTAGATCAATGCTGATAGTGGTTCTCTATTGTCAGTGA  547

seq1  TAAAATTCTAAAGCAAATTTTATATTTAAAAGTTTTTTGGGGAATTTCTA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTCTAAAGCAAATTTTATATTTAAAAGTTTTTTGGGGAATTTCTA  597

seq1  ATGTATACACAGTATACAAAATTAGACACAACAAGTTTAATGTACTAAGT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATACACAGTATACAAAATTAGACACAACAAGTTTAATGTACTAAGT  647

seq1  AAGACATTTATGTGTTCCGAAATAAAGAAGAATGTATCGTTAAGTGGTCA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACATTTATGTGTTCCGAAATAAAGAAGAATGTATCGTTAAGTGGTCA  697

seq1  TTAGCAGTGTCTAAAGGATGTAGGATGTAGTGACTAATTGAGAAGGGATA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCAGTGTCTAAAGGATGTAGGATGTAGTGACTAATTGAGAAGGGATA  747

seq1  TATGTGCAATAAGCAGTGGGTGTTTAAACCTTAATGAAAATAGGAAACAA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGCAATAAGCAGTGGGTGTTTAAACCTTAATGAAAATAGGAAACAA  797

seq1  CACATCTAACAAAAGATGGAGTTTAAATGGCATAGATATGCAATTCATTG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCTAACAAAAGATGGAGTTTAAATGGCATAGATATGCAATTCATTG  847

seq1  TGTTCATATTTCATAATGAAGGGGAAATTAAAAATAAATTCAAGTTTAAG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCATATTTCATAATGAAGGGGAAATTAAAAATAAATTCAAGTTTAAG  897

seq1  GGGAAATATTGGTAAATTTTGCACTTGCTCTTCACAAAATGCTACATCTA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAATATTGGTAAATTTTGCACTTGCTCTTCACAAAATGCTACATCTA  947

seq1  AGACTTTGGTATAACTATATCTGTATAATCACAACCCTGGCTCCCTACCT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTTGGTATAACTATATCTGTATAATCACAACCCTGGCTCCCTACCT  997

seq1  TACATCCAGTACAGATGTAAGCTGTAAACAGAAAGTAGCAAAATACGGGA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATCCAGTACAGATGTAAGCTGTAAACAGAAAGTAGCAAAATACGGGA  1047

seq1  TGATACACAGCAAAAAATATAGATACTGAATCTCTCCTCCCCCGCCCCCC  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATACACAGCAAAAAATATAGATACTGAATCTCTCCTCCCCCGCCCCCC  1097

seq1  CAATTTCCTCTGCGTTCAGGGGAATGAACCTGTGCAGAAAGAACCTAGGA  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTCCTCTGCGTTCAGGGGAATGAACCTGTGCAGAAAGAACCTAGGA  1147

seq1  ATTC  1148
      ||||
seq2  ATTC  1151


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