BAC Information

Click to search

BAC

Clone NameB6Ng01-224P10
Chromosome17 (Build37)
Map Location 53,231,312 - 53,359,146
singlet/doubletdoublet
Overlap geneLOC668506
Upstream geneLOC672987, EG328839, Kcnh8
Downstream geneEG629036, LOC668512, Efhb, LOC668513, Rab5a, 4921523A10Rik, Pcaf, EG628822, Sgol1, EG629065, 4932415M13Rik, Ck-ps1, EG637939, Sult1c2, LOC100043826, LOC100043471, EG668523, LOC629121, Gm324, Sult1c1, LOC100043829, EG435531
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-224P10.bB6Ng01-224P10.g
ACCGA039279GA039280
length343663
definitionB6Ng01-224P10.b B6Ng01-224P10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,358,804 - 53,359,146)(53,231,312 - 53,231,973)
sequence
tttctgcttctggatatcccacctcctatttccttcctaagctatacacc
ataggctttttaattgacacatgttgcatccatacaacacacaacgtatt
cacgcacaacacattctggcactggagtcaagatgcttcagtcactggat
acatttttataatttacttacagtctatctggttccatttctggcccata
aaatgaggatagtgtcgtgataaagttcagaaaattcaagtgagaaactt
tagactaattctcagctgttagcaaatattaaataaactcaccattttaa
ttcagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
gaattctttatatattttggatattagctgtctatcagatataggattta
atgaagatattttcccaatctgtagtctgtcattttgggctattgacatt
gccctttgccttacaaaggcttttcaatttcaagatgtctcatttatcag
ttgttgatcttagagcctgagctacttgtgttctgtttgggaaattttcc
cctgtgacagtgcattgaaggctatttcacattttctcttctattggact
tagtgtaacaggtcttatattgaagactttgatccacttggaattgaact
ttgttcagagtgataaatatggatcaatttgcattcctctatatgcagac
caccagctagaccagcaccatttattgaagaggcacttcctgttccattt
tatggttttggcttctttgtcaaaaatcaagtatccataggtacatgggt
ttatttctgggtcatcaattcggttattttactgatttttatatatatct
tttctttttaacatcacatgctttatagattttttttagaagtgaaaaat
tccatggctacaaatattcagatttgtttacagataggttttttatattt
ttatgtgtgtatgtgtgtagatacacatatatgtgatttatatgtgaggt
gtatgaaggagtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_53358804_53359146
seq2: B6Ng01-224P10.b_54_396 (reverse)

seq1  CACACACACACACACACACACACACACACACACACACACTGAATTAAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACACACACTGAATTAAAAT  50

seq1  GGTGAGTTTATTTAATATTTGCTAACAGCTGAGAATTAGTCTAAAGTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGTTTATTTAATATTTGCTAACAGCTGAGAATTAGTCTAAAGTTTC  100

seq1  TCACTTGAATTTTCTGAACTTTATCACGACACTATCCTCATTTTATGGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTGAATTTTCTGAACTTTATCACGACACTATCCTCATTTTATGGGC  150

seq1  CAGAAATGGAACCAGATAGACTGTAAGTAAATTATAAAAATGTATCCAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAATGGAACCAGATAGACTGTAAGTAAATTATAAAAATGTATCCAGT  200

seq1  GACTGAAGCATCTTGACTCCAGTGCCAGAATGTGTTGTGCGTGAATACGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGAAGCATCTTGACTCCAGTGCCAGAATGTGTTGTGCGTGAATACGT  250

seq1  TGTGTGTTGTATGGATGCAACATGTGTCAATTAAAAAGCCTATGGTGTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTTGTATGGATGCAACATGTGTCAATTAAAAAGCCTATGGTGTAT  300

seq1  AGCTTAGGAAGGAAATAGGAGGTGGGATATCCAGAAGCAGAAA  343
      |||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTAGGAAGGAAATAGGAGGTGGGATATCCAGAAGCAGAAA  343

seq1: chr17_53231312_53231973
seq2: B6Ng01-224P10.g_70_732

seq1  GAATTCTTTATATATTTTGGATATTAGCTGTCTATCAGATATAGGATTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTATATATTTTGGATATTAGCTGTCTATCAGATATAGGATTTA  50

seq1  ATGAAGATATTTTCCCAATCTGTAGTCTGTCATTTTGGGCTATTGACATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGATATTTTCCCAATCTGTAGTCTGTCATTTTGGGCTATTGACATT  100

seq1  GCCCTTTGCCTTACAAAGGCTTTTCAATTTCAAGATGTCTCATTTATCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTTTGCCTTACAAAGGCTTTTCAATTTCAAGATGTCTCATTTATCAG  150

seq1  TTGTTGATCTTAGAGCCTGAGCTACTTGTGTTCTGTTTGGGAAATTTTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGATCTTAGAGCCTGAGCTACTTGTGTTCTGTTTGGGAAATTTTCC  200

seq1  CCTGTGACAGTGCATTGAAGGCTATTTCACATTTTCTCTTCTATTGGACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGACAGTGCATTGAAGGCTATTTCACATTTTCTCTTCTATTGGACT  250

seq1  TAGTGTAACAGGTCTTATATTGAAGACTTTGATCCACTTGGAATTGAACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTAACAGGTCTTATATTGAAGACTTTGATCCACTTGGAATTGAACT  300

seq1  TTGTTCAGAGTGATAAATATGGATCAATTTGCATTCCTCTATATGCAGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCAGAGTGATAAATATGGATCAATTTGCATTCCTCTATATGCAGAC  350

seq1  CACCAGCTAGACCAGCACCATTTATTGAAGAGGCACTTCCTGTTCCATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGCTAGACCAGCACCATTTATTGAAGAGGCACTTCCTGTTCCATTT  400

seq1  TATGGTTTTGGCTTCTTTGTCAAAAATCAAGTATCCATAGGTACATGGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTTTTGGCTTCTTTGTCAAAAATCAAGTATCCATAGGTACATGGGT  450

seq1  TTATTTCTGGGTCATCAATTCGGTTATTTTACTGATTTTTATATATATCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTCTGGGTCATCAATTCGGTTATTTTACTGATTTTTATATATATCT  500

seq1  TTTCTTTTTAACATCACATGCTTTATAGATTTTTTTTAGAAGTGAAAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTTTAACATCACATGCTTTATAGATTTTTTTTAGAAGTGAAAAAT  550

seq1  TCCATGGCTACAAATATTCAGATTTGTTTACAGATAGGTTTTTTATATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGGCTACAAATATTCAGATTTGTTTACAGATAGGTTTTTTATATTT  600

seq1  TTATGTGTGTATGTGTGTAGATACACATATATGTGA-TTATATGTGAGGT  649
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TTATGTGTGTATGTGTGTAGATACACATATATGTGATTTATATGTGAGGT  650

seq1  GTATGAAGGAGTT  662
      |||||||||||||
seq2  GTATGAAGGAGTT  663