BAC Information

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BAC

Clone NameB6Ng01-225I15
Chromosome17 (Build37)
Map Location 50,958,415 - 51,102,742
singlet/doubletdoublet
Overlap geneTbc1d5
Upstream geneKif6, EG668470, Rftn1, EG668475, EG628747, LOC100043818, Dazl, Plcl2, EG654432
Downstream geneLOC100043451, LOC100043452, Satb1, EG628919
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-225I15.bB6Ng01-225I15.g
ACCGA039707GA039708
length1,2191,166
definitionB6Ng01-225I15.b B6Ng01-225I15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,101,559 - 51,102,742)(50,958,415 - 50,959,582)
sequence
gaattcaggctctatatagtcaaaaggacatctcatgcttggaagcatta
ttttggatattctaaataacaatggataagatgacagtaatctaaaatga
aacccaaccttattattacaacttggagggccacaaagcacattctaaga
gcagaccatgtttcggaagaagacagattacaagactcttgtcttattta
cttcgagttttcttacaaggtctcattaatctccagacacagcttcattc
gcggaccatgttcagaaagtgcacaagagcatacctgggcagaagcattc
atctgtattagaaaatactttgtctcagagcactgagaagctcccaagct
aatctcgctttctcacagtcaatacccccggggtaagaggccagagtttc
ctgccctcttaattgctatttaaagaaaacttctcttaccttctttaagg
acagaacgtcccattggttaccagatattgaggtccctacaatctctact
agtagcaaagaaacaaacctcatgaggcaagaaggaaacttgtattagaa
caatgtagtcagtgctgcttcagacttctagagtctgacaccaggcccgt
ttatattagatatatataggcccagtacaattttggagaaaacaaaatgc
ctggtaatatctatcccaagcccatgtgtataaaacacctgatccatcaa
gtttcctcagacctctgcaggtactcagtgaaataaacacacacacacac
acacacacacacacttttagaaagaaggcataaacccattgtacacttat
tgctggtgtccccaattctccataatttgctaaggtgaaattgatgaacc
aataatatgtacattaatattttacttatgtattatataagtatgcacac
acacacacacacacacacacacacacacacacaccttcttgtgcatgtac
caccagaagaggatttggggtgccaaacactattgttattgaatctgtgt
gctacattgtagaatgctgaataattaaactcggaagcttctgcaagaag
cattcaagacttcttaattccactaagcccatctccttccagtccttgaa
attgtatattaaaaagagctcaaaatataatattttttgtagaaaaaaaa
ttaaagttatcctccaaagaacaaagcaccctgtgaaaagcaacacgaat
atgtctctggaaaaacaca
gaattctttggtctgatattcactgactgctagagggttcacagaaggtc
ttaattctgtctcttattagcacacactgtcccatcattaaatacagata
caggtatcaaagttttacacacacacacacacacacacacacacacacac
acacacacacacacacacacacacacacgatactcctgtctggacattac
tgtaaactcactgactttgtaccttatttcctcccttgcccttaggagtt
gaactcagacgttactgatgattgagcagcacagtcattttgctattgta
gtgagatatatgctggctggtacatcaagccataccttctccatataagg
tattgttttagtaaagcaaccaacaagcaaataaaaacagcttatactgt
gagctaatttcaaatgtctactacaaaataaatttacaagacatcagatt
ttgaaaaacaaaatttaggtttttaagacaatatttgaaaatcgaaaagt
tatgaatataatgcatctgtcatgtaatagattttcatctaagaaaataa
ggggaatgaaattttctactgtggtgtgttagactattaactcagcacca
agatgatctctggtctatactaatattacaacacatttggataaaatatc
atattgaaaatagaacatggacatattacgaatagcgagtgttaaaatct
tagaacaatttttatacatgtttaggcaaaaaccaaagattaaaaacaag
aaagcaaaacaacattaattgggcaactataaagagaaaaacttctgagc
ccatgccagccccatttcacataccgaataaacccaattccctaaagtga
catctgcatctttgccctggcacgctgaggtctcagatggcagagaagca
ttttaaaccacctgtgcattatgcacaattctaacctttacacaataaag
agataacagaaggagaaacattttttcctttttttttctaatgtatttac
atttgaacttagcatgcaaggcgcatgccagagtaacacactccccctgc
ccacccattatttgatactttctaatatattgaaagtaggactttagtcc
tttcaccttcttgtcacctatgctggacctcgaacctgtctaaggtagct
gatcttcctcacgcac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_51101559_51102742
seq2: B6Ng01-225I15.b_44_1262 (reverse)

seq1  TGTGTTTCTCCAGACA-ATA---CTGT--CTTCT-ACA--GTGCTT--GT  39
      ||||||| |||||| | |||    |||  ||| | |||  ||||||   |
seq2  TGTGTTTTTCCAGAGACATATTCGTGTTGCTTTTCACAGGGTGCTTTGTT  50

seq1  CTGT----GAGTACTTAA----TTCTTCTACAAAAA----TATATATTGA  77
      || |    ||  |||| |    || |||||||||||    ||||| ||||
seq2  CTTTGGAGGATAACTTTAATTTTTTTTCTACAAAAAATATTATATTTTGA  100

seq1  GCTC-TTTTAATATACAA-TTCAGGGACTGGA--GAGAT-GGCTTAGTG-  121
      |||| ||||||||||||| |||| ||||||||  ||||| ||||||||| 
seq2  GCTCTTTTTAATATACAATTTCAAGGACTGGAAGGAGATGGGCTTAGTGG  150

seq1  -ATTAAG-AGTCCTGAATGC-TCTTGCAGAAGC-TCCGAGTTTAATTA-T  166
       |||||| |||| ||||||| |||||||||||| |||||||||||||| |
seq2  AATTAAGAAGTCTTGAATGCTTCTTGCAGAAGCTTCCGAGTTTAATTATT  200

seq1  CAGCA-TCTACAATGTAGCACACAAGAATCAATAACAATAGTGTTTGGCA  215
      ||||| ||||||||||||||||| ||| ||||||||||||||||||||||
seq2  CAGCATTCTACAATGTAGCACAC-AGATTCAATAACAATAGTGTTTGGCA  249

seq1  CCCAAAATCCTCTTCTGGT-GTACATGCACAAGAAGGTGTGTGTGTGTGT  264
      ||| ||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CCCCAAATCCTCTTCTGGTGGTACATGCACAAGAAGGTGTGTGTGTGTGT  299

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGCATACTTATATAATACATAAGTAAA  314
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGCATACTTATATAATACATAAGTAAA  349

seq1  ATATTAATGTACATATTATTGGTTCATCAATTTCACCTTAGCAAATTATG  364
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAATGTACATATTATTGGTTCATCAATTTCACCTTAGCAAATTATG  399

seq1  GAGAATTGGGGACACCAGCAATAAGTGTACAATGGGTTTATGCCTTCTTT  414
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATTGGGGACACCAGCAATAAGTGTACAATGGGTTTATGCCTTCTTT  449

seq1  CTAAAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTATTTCACTGAGTAC  464
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTATTTCACTGAGTAC  499

seq1  CTGCAGAGGTCTGAGGAAACTTGATGGATCAGGTGTTTTATACACATGGG  514
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGAGGTCTGAGGAAACTTGATGGATCAGGTGTTTTATACACATGGG  549

seq1  CTTGGGATAGATATTACCAGGCATTTTGTTTTCTCCAAAATTGTACTGGG  564
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGATAGATATTACCAGGCATTTTGTTTTCTCCAAAATTGTACTGGG  599

seq1  CCTATATATATCTAATATAAACGGGCCTGGTGTCAGACTCTAGAAGTCTG  614
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATATATATCTAATATAAACGGGCCTGGTGTCAGACTCTAGAAGTCTG  649

seq1  AAGCAGCACTGACTACATTGTTCTAATACAAGTTTCCTTCTTGCCTCATG  664
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGCACTGACTACATTGTTCTAATACAAGTTTCCTTCTTGCCTCATG  699

seq1  AGGTTTGTTTCTTTGCTACTAGTAGAGATTGTAGGGACCTCAATATCTGG  714
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTGTTTCTTTGCTACTAGTAGAGATTGTAGGGACCTCAATATCTGG  749

seq1  TAACCAATGGGACGTTCTGTCCTTAAAGAAGGTAAGAGAAGTTTTCTTTA  764
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCAATGGGACGTTCTGTCCTTAAAGAAGGTAAGAGAAGTTTTCTTTA  799

seq1  AATAGCAATTAAGAGGGCAGGAAACTCTGGCCTCTTACCCCGGGGGTATT  814
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCAATTAAGAGGGCAGGAAACTCTGGCCTCTTACCCCGGGGGTATT  849

seq1  GACTGTGAGAAAGCGAGATTAGCTTGGGAGCTTCTCAGTGCTCTGAGACA  864
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTGAGAAAGCGAGATTAGCTTGGGAGCTTCTCAGTGCTCTGAGACA  899

seq1  AAGTATTTTCTAATACAGATGAATGCTTCTGCCCAGGTATGCTCTTGTGC  914
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATTTTCTAATACAGATGAATGCTTCTGCCCAGGTATGCTCTTGTGC  949

seq1  ACTTTCTGAACATGGTCCGCGAATGAAGCTGTGTCTGGAGATTAATGAGA  964
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCTGAACATGGTCCGCGAATGAAGCTGTGTCTGGAGATTAATGAGA  999

seq1  CCTTGTAAGAAAACTCGAAGTAAATAAGACAAGAGTCTTGTAATCTGTCT  1014
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTAAGAAAACTCGAAGTAAATAAGACAAGAGTCTTGTAATCTGTCT  1049

seq1  TCTTCCGAAACATGGTCTGCTCTTAGAATGTGCTTTGTGGCCCTCCAAGT  1064
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCGAAACATGGTCTGCTCTTAGAATGTGCTTTGTGGCCCTCCAAGT  1099

seq1  TGTAATAATAAGGTTGGGTTTCATTTTAGATTACTGTCATCTTATCCATT  1114
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATAATAAGGTTGGGTTTCATTTTAGATTACTGTCATCTTATCCATT  1149

seq1  GTTATTTAGAATATCCAAAATAATGCTTCCAAGCATGAGATGTCCTTTTG  1164
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTTAGAATATCCAAAATAATGCTTCCAAGCATGAGATGTCCTTTTG  1199

seq1  ACTATATAGAGCCTGAATTC  1184
      ||||||||||||||||||||
seq2  ACTATATAGAGCCTGAATTC  1219

seq1: chr17_50958415_50959582
seq2: B6Ng01-225I15.g_62_1227

seq1  GAATTCTTTGGTCTGATATTCACTGACTGCTAGAGGGTTCACAGAAGGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGGTCTGATATTCACTGACTGCTAGAGGGTTCACAGAAGGTC  50

seq1  TTAATTCTGTCTCTTATTAGCACACACTGTCCCATCATTAAATACAGATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTCTGTCTCTTATTAGCACACACTGTCCCATCATTAAATACAGATA  100

seq1  CAGGTATCAAAGTTTTACACACACACACACACACACACACACACACACAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTATCAAAGTTTTACACACACACACACACACACACACACACACACAC  150

seq1  ACACACACACACACACACACACACACACGATACTCCTGTCTGGACATTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACGATACTCCTGTCTGGACATTAC  200

seq1  TGTAAACTCACTGACTTTGTACCTTATTTCCTCCCTTGCCCTTAGGAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAACTCACTGACTTTGTACCTTATTTCCTCCCTTGCCCTTAGGAGTT  250

seq1  GAACTCAGACGTTACTGATGATTGAGCAGCACAGTCATTTTGCTATTGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCAGACGTTACTGATGATTGAGCAGCACAGTCATTTTGCTATTGTA  300

seq1  GTGAGATATATGCTGGCTGGTACATCAAGCCATACCTTCTCCATATAAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGATATATGCTGGCTGGTACATCAAGCCATACCTTCTCCATATAAGG  350

seq1  TATTGTTTTAGTAAAGCAACCAACAAGCAAATAAAAACAGCTTATACTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTTTTAGTAAAGCAACCAACAAGCAAATAAAAACAGCTTATACTGT  400

seq1  GAGCTAATTTCAAATGTCTACTACAAAATAAATTTACAAGACATCAGATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTAATTTCAAATGTCTACTACAAAATAAATTTACAAGACATCAGATT  450

seq1  TTGAAAAACAAAATTTAGGTTTTTAAGACAATATTTGAAAATCGAAAAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAAACAAAATTTAGGTTTTTAAGACAATATTTGAAAATCGAAAAGT  500

seq1  TATGAATATAATGCATCTGTCATGTAATAGATTTTCATCTAAGAAAATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAATATAATGCATCTGTCATGTAATAGATTTTCATCTAAGAAAATAA  550

seq1  GGGGAATGAAATTTTCTACTGTGGTGTGTTAGACTATTAACTCAGCACCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAATGAAATTTTCTACTGTGGTGTGTTAGACTATTAACTCAGCACCA  600

seq1  AGATGATCTCTGGTCTATACTAATATTACAACACATTTGGATAAAATATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGATCTCTGGTCTATACTAATATTACAACACATTTGGATAAAATATC  650

seq1  ATATTGAAAATAGAACATGGACATATTACGAATAGCGAGTGTTAAAATCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGAAAATAGAACATGGACATATTACGAATAGCGAGTGTTAAAATCT  700

seq1  TAGAACAATTTTTATACATGTTTAGGCAAAAACCAAAGATTAAAAACAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACAATTTTTATACATGTTTAGGCAAAAACCAAAGATTAAAAACAAG  750

seq1  AAAGCAAAACAACATTAATTGGGCAACTATAAAGAGAAAAACTTCTGAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAAAACAACATTAATTGGGCAACTATAAAGAGAAAAACTTCTGAGC  800

seq1  CCATGCCAGCCCCATTTCACATACCGAATAAACCCAATTCCCTAAAGTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCCAGCCCCATTTCACATACCGAATAAACCCAATTCCCTAAAGTGA  850

seq1  CATCTGCATCTTTGCCCTGGCACGCTGAGGTCTCAGATGGCAGAGAAGCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGCATCTTTGCCCTGGCACGCTGAGGTCTCAGATGGCAGAGAAGCA  900

seq1  TTTTAAACCACCTGTGCATTATGCACAATTCTAA-CTTTACACAATAAAG  949
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TTTTAAACCACCTGTGCATTATGCACAATTCTAACCTTTACACAATAAAG  950

seq1  AGATAACAGAA-GAGAAACAATTTTTCC-TTTTTTTTCTAATGTTATTTA  997
      ||||||||||| |||||||| ||||||| |||||||||||||| ||||||
seq2  AGATAACAGAAGGAGAAACATTTTTTCCTTTTTTTTTCTAATG-TATTTA  999

seq1  CATTTTGAACTTAGCATGC-AGGCGCATGCCAGAGTAACACACTCCCCCT  1046
      || |||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CA-TTTGAACTTAGCATGCAAGGCGCATGCCAGAGTAACACACTCCCCCT  1048

seq1  GCCCACCCCATATTTGATAC-TTCT-ATATATGGAAAGTAGGACCTTAGT  1094
      ||||||||  |||||||||| |||| |||||| ||||||||||| |||||
seq2  GCCCACCCATTATTTGATACTTTCTAATATATTGAAAGTAGGACTTTAGT  1098

seq1  -CTTTCACCTTTCCTTTGTCACTAATGCTGGGCCTCCGAACACTGTCTTA  1143
       ||||||||||    |||||||  ||||||| ||| ||||| |||||| |
seq2  CCTTTCACCTT---CTTGTCACCTATGCTGGACCT-CGAAC-CTGTCTAA  1143

seq1  GGTAAGCCTGGTCTTTCTCACGCAC  1168
      ||||   ||| |||| |||||||||
seq2  GGTA--GCTGATCTTCCTCACGCAC  1166