BAC Information

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BAC

Clone NameB6Ng01-226L06
Chromosome17 (Build37)
Map Location 17,521,951 - 17,655,249
singlet/doubletdoublet
Overlap geneRiok2, Lix1, LOC383297
Upstream geneLOC100041394, LOC213781, LOC100041407, LOC665072, EG383211, LOC626785, LOC665085, BC002059, BC018101, Zfp97, EG382161, LOC676238, EG626854, LOC100041965
Downstream geneLnpep, EG665140, LOC100041519, EG626942, 4930546H06Rik, Has1, Fpr1, Fpr-rs2, LOC665183, LOC670250, EG665187, LOC546683, Fprl1, LOC627060, Fpr-rs4, EG637021, EG665210, Vmn2r92, EG665227, EG627132, LOC100041612, Vmn2r95, Vmn2r-ps114
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-226L06.bB6Ng01-226L06.g
ACCGA040570GA040571
length1,1341,175
definitionB6Ng01-226L06.b B6Ng01-226L06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,654,102 - 17,655,249)(17,521,951 - 17,523,147)
sequence
gaattcactatcaaaagaggtggtgcattattgtgaaattaagcttggat
ataagtggtttgaacttactgataatgtaaatgacccaaatcccatgacc
ttgagaaaggagccctttttatgtgtcttgatgaagtgcagtgcactgag
gtagcactgtctctgttgaaggcaatcctgtcaggaggttcccactgtca
ccatcgaatcatatagcaaggaaaatgattgccaccggtgaagtaacaag
tgctgtgttttctttttacaagtttaagccttgaatttgcttgtatttta
ttcaaggaacagtattatttgttagaaaacaggccagcaagatggctcag
tcaataaaggtacacgctgtcaggcctgatgacctgagtttgatccacat
catggaagaaaggaaataatactagcttcactaactaggttttgtaaaaa
tccattttcctaaagtactttgaattcagcctcaactaaagcatctaccc
tcagctgcagacttctgtgatttctattgcgaggagataagaactttcac
aaggtttagttctaagataggtgttatcaggtcatttttggttggttggt
tggttggtttgctttggttatgagagagcatggcctaagtgtcagatgtc
ctgcttgtgtacatcttgtagtctctcttctacctttagcaaagttggat
tcagaacttagtccaagatccttttctacacaatgtgctaaagccgacat
gttgctgaacaatgtaggatttcccaggcaagcaaatgaggaaatctgaa
aaaattatttaccttcctgagcctctttttttttcttcagaacatctcac
ttacctggccatttctagggaatcttctttcacacacacattctcacaaa
ctcatgcatgtgcacacatgggcacacacatacagagagagggacataga
gcccttgctgattcctcacttctccataactccttgagtgtctcctttag
agcattggggctcagtgtcaaaatcagatcaaaagcccagtatacagcag
tcacaaatgcctccaccgttttaaagcctgtgtgcctttggattgtggca
tctctagagtcactctcacagtaactccagtact
gaattcaatctcatgttggacaaagatgaccacatcaccatgattgattt
tccgcagatggtttccacatcccacccaaatgctgaatggtatatgctaa
aactgattgtagttgtggatgtatttgtatatcacagaatctctttttat
ttataattttccagttttctatttgatcagtaaatgatttcaattaagga
catttgtttttcaattaatggatatggaactactagaattttccctgtaa
gaaaatctttaaagaagaacttttaaaagaaaaaactacacttagatcct
attttaaccctaattattatgctaatcctgtgttctggaaatctaaatgg
aactgactgtccacctatcttatacataaactgcaatgtagatatcacta
aaaaaaagttggacttaacactcaaatcaagctttcttagccagggagcc
atttattcaagcagaacttcaagaaggagtctgggttttaaagacaaagc
ttgttcatatgtggaaaaagtatgtgtcctgtatagaagtaaataaatga
acacgaagtaggaaagaattttaaatgagtgtttccttttacaggtattt
tgacagagatgttaaatgcattcgagaattcttcatgaaacgttttagct
atgaaagtgagctctacccaaccttcagtgatatcaggtctgtcgtatac
tgcttataatgatagagccgcttcagtagattatttgcttaattctaaag
tgaatgtccagacagtgtatttctgattatttttgtatatatttgtatat
tctggtgcgtgtcagaagaaggcatcagatcccattatagatgtttgtga
gccactgtgtggttgctgggaattgaactgaggacttctggaagagcagc
cagtgctcttaccattgagctgtctctccagaccctacattgtacttttg
gatgctgaattttttttcctatttgactgctgtatcaaatattcatagcc
cattttaagaaatcagtgtcaaatctagtgaaatggtggttcattcttct
tttttaagtttttgggtttatacgtgtattctgtatcttcaatacgtcca
atttgctgtataacactggtgaccaagcagctaggggaaagcattattgg
actccacagggttacgaccatcatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_17654102_17655249
seq2: B6Ng01-226L06.b_44_1177 (reverse)

seq1  AGTACT-GAGTAACTTGTGAGAAGTGACTCTAAGAGATGCCACAATACAA  49
      |||||| |||| || |||||| ||||||||| |||||||||||||| |||
seq2  AGTACTGGAGTTAC-TGTGAG-AGTGACTCT-AGAGATGCCACAATCCAA  47

seq1  AAGGCCACAAACCAGCCTTTTAAACGGTGAGGCCATTTTGTTGACCTGCT  99
      |  | ||||   ||| |||| ||||||||  | |||||   ||| |||||
seq2  A--GGCACA---CAGGCTTTAAAACGGTGGAGGCATTT--GTGA-CTGCT  89

seq1  GTTATACTGGCCTTTTGGATCTGGATTTTGACACTGAGCCCCAATGCTCT  149
      | |||||||| ||||| ||||| |||||||||||||||||||||||||||
seq2  G-TATACTGGGCTTTT-GATCT-GATTTTGACACTGAGCCCCAATGCTCT  136

seq1  AAAGGAGACACTTCAAGGAGTTATGGAGAAGTGAGGAATCAGCAAGGGCT  199
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAGACAC-TCAAGGAGTTATGGAGAAGTGAGGAATCAGCAAGGGCT  185

seq1  CTATGTCCCTCTCTCTGTATGTGTGTGCCCATGTGTGCACATGCATGAGT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTCCCTCTCTCTGTATGTGTGTGCCCATGTGTGCACATGCATGAGT  235

seq1  TTGTGAGAATGTGTGTGTGAAAGAAGATTCCCTAGAAATGGCCAGGTAAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAGAATGTGTGTGTGAAAGAAGATTCCCTAGAAATGGCCAGGTAAG  285

seq1  TGAGATGTTCTGAAGAAAAAAAAAGAGGCTCAGGAAGGTAAATAATTTTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATGTTCTGAAGAAAAAAAAAGAGGCTCAGGAAGGTAAATAATTTTT  335

seq1  TCAGATTTCCTCATTTGCTTGCCTGGGAAATCCTACATTGTTCAGCAACA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATTTCCTCATTTGCTTGCCTGGGAAATCCTACATTGTTCAGCAACA  385

seq1  TGTCGGCTTTAGCACATTGTGTAGAAAAGGATCTTGGACTAAGTTCTGAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCGGCTTTAGCACATTGTGTAGAAAAGGATCTTGGACTAAGTTCTGAA  435

seq1  TCCAACTTTGCTAAAGGTAGAAGAGAGACTACAAGATGTACACAAGCAGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAACTTTGCTAAAGGTAGAAGAGAGACTACAAGATGTACACAAGCAGG  485

seq1  ACATCTGACACTTAGGCCATGCTCTCTCATAACCAAAGCAAACCAACCAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTGACACTTAGGCCATGCTCTCTCATAACCAAAGCAAACCAACCAA  535

seq1  CCAACCAACCAAAAATGACCTGATAACACCTATCTTAGAACTAAACCTTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACCAACCAAAAATGACCTGATAACACCTATCTTAGAACTAAACCTTG  585

seq1  TGAAAGTTCTTATCTCCTCGCAATAGAAATCACAGAAGTCTGCAGCTGAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGTTCTTATCTCCTCGCAATAGAAATCACAGAAGTCTGCAGCTGAG  635

seq1  GGTAGATGCTTTAGTTGAGGCTGAATTCAAAGTACTTTAGGAAAATGGAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGATGCTTTAGTTGAGGCTGAATTCAAAGTACTTTAGGAAAATGGAT  685

seq1  TTTTACAAAACCTAGTTAGTGAAGCTAGTATTATTTCCTTTCTTCCATGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACAAAACCTAGTTAGTGAAGCTAGTATTATTTCCTTTCTTCCATGA  735

seq1  TGTGGATCAAACTCAGGTCATCAGGCCTGACAGCGTGTACCTTTATTGAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGATCAAACTCAGGTCATCAGGCCTGACAGCGTGTACCTTTATTGAC  785

seq1  TGAGCCATCTTGCTGGCCTGTTTTCTAACAAATAATACTGTTCCTTGAAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCATCTTGCTGGCCTGTTTTCTAACAAATAATACTGTTCCTTGAAT  835

seq1  AAAATACAAGCAAATTCAAGGCTTAAACTTGTAAAAAGAAAACACAGCAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATACAAGCAAATTCAAGGCTTAAACTTGTAAAAAGAAAACACAGCAC  885

seq1  TTGTTACTTCACCGGTGGCAATCATTTTCCTTGCTATATGATTCGATGGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTACTTCACCGGTGGCAATCATTTTCCTTGCTATATGATTCGATGGT  935

seq1  GACAGTGGGAACCTCCTGACAGGATTGCCTTCAACAGAGACAGTGCTACC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTGGGAACCTCCTGACAGGATTGCCTTCAACAGAGACAGTGCTACC  985

seq1  TCAGTGCACTGCACTTCATCAAGACACATAAAAAGGGCTCCTTTCTCAAG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGCACTGCACTTCATCAAGACACATAAAAAGGGCTCCTTTCTCAAG  1035

seq1  GTCATGGGATTTGGGTCATTTACATTATCAGTAAGTTCAAACCACTTATA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATGGGATTTGGGTCATTTACATTATCAGTAAGTTCAAACCACTTATA  1085

seq1  TCCAAGCTTAATTTCACAATAATGCACCACCTCTTTTGATAGTGAATTC  1148
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGCTTAATTTCACAATAATGCACCACCTCTTTTGATAGTGAATTC  1134

seq1: chr17_17521951_17523147
seq2: B6Ng01-226L06.g_68_1242

seq1  GAATTCAATCTCATGTTGGACAAAGATGACCACATCACCATGATTGATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATCTCATGTTGGACAAAGATGACCACATCACCATGATTGATTT  50

seq1  TCCGCAGATGGTTTCCACATCCCACCCAAATGCTGAATGGTATATGCTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGCAGATGGTTTCCACATCCCACCCAAATGCTGAATGGTATATGCTAA  100

seq1  AACTGATTGTAGTTGTGGATGTATTTGTATATCACAGAATCTCTTTTTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGATTGTAGTTGTGGATGTATTTGTATATCACAGAATCTCTTTTTAT  150

seq1  TTATAATTTTCCAGTTTTCTATTTGATCAGTAAATGATTTCAATTAAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAATTTTCCAGTTTTCTATTTGATCAGTAAATGATTTCAATTAAGGA  200

seq1  CATTTGTTTTTCAATTAATGGATATGGAACTACTAGAATTTTCCCTGTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGTTTTTCAATTAATGGATATGGAACTACTAGAATTTTCCCTGTAA  250

seq1  GAAAATCTTTAAAGAAGAACTTTTAAAAGAAAAAACTACACTTAGATCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATCTTTAAAGAAGAACTTTTAAAAGAAAAAACTACACTTAGATCCT  300

seq1  ATTTTAACCCTAATTATTATGCTAATCCTGTGTTCTGGAAATCTAAATGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAACCCTAATTATTATGCTAATCCTGTGTTCTGGAAATCTAAATGG  350

seq1  AACTGACTGTCCACCTATCTTATACATAAACTGCAATGTAGATATCACTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGACTGTCCACCTATCTTATACATAAACTGCAATGTAGATATCACTA  400

seq1  AAAAAAAGTTGGACTTAACACTCAAATCAAGCTTTCTTAGCCAGGGAGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAGTTGGACTTAACACTCAAATCAAGCTTTCTTAGCCAGGGAGCC  450

seq1  ATTTATTCAAGCAGAACTTCAAGAAGGAGTCTGGGTTTTAAAGACAAAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTCAAGCAGAACTTCAAGAAGGAGTCTGGGTTTTAAAGACAAAGC  500

seq1  TTGTTCATATGTGGAAAAAGTATGTGTCCTGTATAGAAGTAAATAAATGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCATATGTGGAAAAAGTATGTGTCCTGTATAGAAGTAAATAAATGA  550

seq1  ACACGAAGTAGGAAAGAATTTTAAATGAGTGTTTCCTTTTACAGGTATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGAAGTAGGAAAGAATTTTAAATGAGTGTTTCCTTTTACAGGTATTT  600

seq1  TGACAGAGATGTTAAATGCATTCGAGAATTCTTCATGAAACGTTTTAGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGAGATGTTAAATGCATTCGAGAATTCTTCATGAAACGTTTTAGCT  650

seq1  ATGAAAGTGAGCTCTACCCAACCTTCAGTGATATCAGGTCTGTCGTATAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAGTGAGCTCTACCCAACCTTCAGTGATATCAGGTCTGTCGTATAC  700

seq1  TGCTTATAATGATAGAGCCGCTTCAGTAGATTATTTGCTTAATTCTAAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTATAATGATAGAGCCGCTTCAGTAGATTATTTGCTTAATTCTAAAG  750

seq1  TGAATGTCCAGACAGTGTATTTCTGATTATTTTTGTATATATTTGTATAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGTCCAGACAGTGTATTTCTGATTATTTTTGTATATATTTGTATAT  800

seq1  TCTGGTGCGTGTCAGAAGAAGGCATCAGATCCCATTATAGATGTTTGTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTGCGTGTCAGAAGAAGGCATCAGATCCCATTATAGATGTTTGTGA  850

seq1  GCCACTGTGTGGTTGCTGGGAATTGAACTGAGGACTTCTGGAAGAGCAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTGTGTGGTTGCTGGGAATTGAACTGAGGACTTCTGGAAGAGCAGC  900

seq1  CAGTGCTCTTACCATTGAGCTGTCTCTCCAGACCCTACAATTGTACTTTT  950
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CAGTGCTCTTACCATTGAGCTGTCTCTCCAGACCCTAC-ATTGTACTTTT  949

seq1  GGATGCTGAA-TTTTTTTCCTATTTTGACTGCTGTATCAAATATTCATAG  999
      |||||||||| ||||||||||| |||||||||||||||||||||||||||
seq2  GGATGCTGAATTTTTTTTCCTA-TTTGACTGCTGTATCAAATATTCATAG  998

seq1  CCCATTTTTAAGAAATCAAGTGTCAAATCTTAGTGAAATTGGTGGTTTTC  1049
      |||| |||||||||||| ||||||||||| |||||||| ||||||     
seq2  CCCA-TTTTAAGAAATC-AGTGTCAAATC-TAGTGAAA-TGGTGG-----  1039

seq1  TTTTCTTTTTCTTTTTTTAAGTTTTTGTGTTTTATTACGTGTATTTCTGT  1099
        ||| || |  ||||||||||||||| ||||   |||||||| ||||||
seq2  --TTCATTCTTCTTTTTTAAGTTTTTGGGTTT--ATACGTGTA-TTCTGT  1084

seq1  ATCTTCATTACGGTTTCAA-TTGCTGTAATAAAACACT-GTGACCAAAAG  1147
      ||||||| ||||  | ||| ||||||   || |||||| ||||||  |||
seq2  ATCTTCAATACG--TCCAATTTGCTG---TATAACACTGGTGACC--AAG  1127

seq1  CAGCTTAGGGGAGAAGCATTTATTTGACT-CACA-GGTTACAGACCATCA  1195
      |||| ||||||| ||||| ||||| |||| |||| |||||| ||||||||
seq2  CAGC-TAGGGGA-AAGCA-TTATTGGACTCCACAGGGTTAC-GACCATCA  1173

seq1  TC  1197
      ||
seq2  TC  1175