BAC Information

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BAC

Clone NameB6Ng01-226N22
Chromosome17 (Build37)
Map Location 23,482,560 - 23,684,292
singlet/doubletdoublet
Overlap geneEG638102, EG619697, EG619775, EG619788, Olfr752-ps1, EG666030
Upstream gene6330416L07Rik, Zfp758, 1300003B13Rik, EG210876, LOC100042656, EG628185, ENSMUSG00000046088, EG383218, EG433078, LOC100042679, A630033E08Rik, LOC671128, LOC665961, EG434701, LOC665976, LOC100042225, LOC100042234, EG665988, LOC100042248, Zfp40, LOC100042257, LOC100042261, Vmn2r-ps133, EG666002
Downstream geneEG381070, Zfp213, Zfp13, Zscan10, LOC666062, Mmp25, LOC665757, BC038613, Thoc6, Hcfc1r1, Tnfrsf12a, Cldn6, Cldn9, EG666080, 1520401A03Rik, Pkmyt1, Paqr4, Kremen2, 9530082P21Rik, Flywch1, 2810417J12Rik, LOC100042865, Srrm2, Tceb2, Prss33, 4931440B09Rik, Prss32, Prss21, Dcpp1, LOC666157, Dcpp2, LOC620233, Dcpp3, Sbp, Sbpl, Tmprss8, Prss22, LOC100042414, LOC383225, Prss27, Kctd5, Pdpk1, Amdhd2, Atp6v0c, Tbc1d24, Ntn2l, 1600002H07Rik, Ccnf, Abca17, Abca3, Rnps1, Dci, Dnase1l2, E4f1, 1700012G19Rik, Gbl, 9930021D14Rik, LOC666299, Caskin1, Traf7, Rab26
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-226N22.bB6Ng01-226N22.g
ACCGA040686GA040687
length1,1501,065
definitionB6Ng01-226N22.b B6Ng01-226N22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(23,482,560 - 23,483,696)(23,683,237 - 23,684,292)
sequence
gaattcattgtaccttgtgctggttcctgatttctagttctttcagatta
cttatggaccctttcatcctgtcctgagtgatcatgaaaaatttccctat
ctacatcagatggcttctgaccatacatctctagcctttggcctggtatc
cttcataattcatttcggttggaactgggtagggttggtcatctcagaca
atgatcaaggtatccaatttctctcctatttgaaaacagagatggaaaaa
aatacaatctgctttgcttttgtcaacatgattccaatgagcatgaattt
gtacatgtcaaaagctgaagtgtattacaaccaaatcatgacatcatcca
caaatgttgtcatcatttatggtgacacagacagtactttagctgtaagc
tttagaatgtgggaatccctaggtatacagagactatggatcactacctc
acagtggaatgtcagtcctggtatgaaagactttacatttggtaatgaat
atgggacttttgcttttggacaacaccatagtgagatatctgggtttaaa
cattttgtccagacattgaactctgtcaaatgcccagatgagtatctggt
aaagctggaatggatgcactttaactgtgaggtctcagcctctaaatgta
agacactgaagaactgctcatccaatcactcattggaatggttaatggta
catacttttgacatggcctttattgaagggagttatgacatatacaatgc
tgtttatgcttttgcccacgcactccatcagataactttttcaaaagttt
gataatctgcccaaggacaatgggaaagaacacaattatagctgcaaaaa
ggtaatgtttctgctgttaaatcatgtttagtgttattaattttgtagtt
gtaagagactataatgcccaaaccaaatgtgctagaaaatgtttttccaa
gatgcaaagaattttttattgagcaagtattattttttattattagtata
ggactctatgttaagcgattatactatggaggcaggatctgtccatgtag
acctggtgattttggtattgattacttgggatatcattatacaatttctg
gttcctggaaatcataacctcaccccatgctcatggagtctcactaaatg

gaattctatacacttccgggttctagaacgaattagacttgtcttagagc
catggtggtaggtttgctcctgtagcttcgtatcaatcgcacagccaggg
cttgtgtggccccttccgttcccaggagtcacaaggttggggacaaggtg
gtggtctgtgaggatgttagtgagacccccgtttagggcccgatcggttc
cagaatctaatcatggcgagcatgcgttttcaaagccgccgcaggacact
ggatcccttgccgaacgctaagctgtgggcttcggaagaaccaacccgga
gttgtggtttctgtgtctgggtctctgagctgcgcgggtcttctaggcag
agtctggccccgagtgggtttggccaaggtacaggatctgcgggttctat
ggctctcccggacgactgagcttgtgtggactggcgtgtcaggaagctct
cattctcgaagtcctagacttggctctacctgggacaaaatttctgagcc
gccgtccaccatgaaactgcattgttcacacaaactcgctggcttccctt
tcccgaaggacgatggtctatggtcattcatatcgtacgctgggggccgt
ctgacctgtcttgagcgtttcggaactttctctccaggcaagtctccacg
gagcccgatctcctcctttcgcttcctggaactcttagaaaaataaactt
gtggagtcgaattctagcgggagcatgtcattcagctcgagatacctaaa
gatcaacgttgaggctgcttgtcaccgtggctcgttggtctaggggtatg
attctcgctttgggtgcgagaggtcccgggttcaaatccccggacgagcc
cagttttttagcgctcagagtgtctggtccgacgcaaccctatctcggta
gactcctggattctcacgagccaggttttttaggaaccagagatgggagg
agaatctagctccgtggataccaggtaattgctcagaaggtcagatacca
gcgtgggatttcgtcatgactccaggaatcatagctgagcagaatcacgt
ttttagtatttttat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_23482560_23483696
seq2: B6Ng01-226N22.b_47_1196

seq1  GAATTCATTGTACCTTGTGCTGGTTCCTGATTTCTAGTTCTTTCAGATTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGTACCTTGTGCTGGTTCCTGATTTCTAGTTCTTTCAGATTA  50

seq1  CTTATGGACCCTTTCATCCTGTCCTGAGTGATCATGAAAAATTTCCCTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATGGACCCTTTCATCCTGTCCTGAGTGATCATGAAAAATTTCCCTAT  100

seq1  CTACATCAGATGGCTTCTGACCATACATCTCTAGCCTTTGGCCTGGTATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATCAGATGGCTTCTGACCATACATCTCTAGCCTTTGGCCTGGTATC  150

seq1  CTTCATAATTCATTTCGGTTGGAACTGGGTAGGGTTGGTCATCTCAGACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATAATTCATTTCGGTTGGAACTGGGTAGGGTTGGTCATCTCAGACA  200

seq1  ATGATCAAGGTATCCAATTTCTCTCCTATTTGAAAACAGAGATGGAAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATCAAGGTATCCAATTTCTCTCCTATTTGAAAACAGAGATGGAAAAA  250

seq1  AATACAATCTGCTTTGCTTTTGTCAACATGATTCCAATGAGCATGAATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAATCTGCTTTGCTTTTGTCAACATGATTCCAATGAGCATGAATTT  300

seq1  GTACATGTCAAAAGCTGAAGTGTATTACAACCAAATCATGACATCATCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACATGTCAAAAGCTGAAGTGTATTACAACCAAATCATGACATCATCCA  350

seq1  CAAATGTTGTCATCATTTATGGTGACACAGACAGTACTTTAGCTGTAAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGTTGTCATCATTTATGGTGACACAGACAGTACTTTAGCTGTAAGC  400

seq1  TTTAGAATGTGGGAATCCCTAGGTATACAGAGACTATGGATCACTACCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAATGTGGGAATCCCTAGGTATACAGAGACTATGGATCACTACCTC  450

seq1  ACAGTGGAATGTCAGTCCTGGTATGAAAGACTTTACATTTGGTAATGAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGGAATGTCAGTCCTGGTATGAAAGACTTTACATTTGGTAATGAAT  500

seq1  ATGGGACTTTTGCTTTTGGACAACACCATAGTGAGATATCTGGGTTTAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGACTTTTGCTTTTGGACAACACCATAGTGAGATATCTGGGTTTAAA  550

seq1  CATTTTGTCCAGACATTGAACTCTGTCAAATGCCCAGATGAGTATCTGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTGTCCAGACATTGAACTCTGTCAAATGCCCAGATGAGTATCTGGT  600

seq1  AAAGCTGGAATGGATGCACTTTAACTGTGAGGTCTCAGCCTCTAAATGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTGGAATGGATGCACTTTAACTGTGAGGTCTCAGCCTCTAAATGTA  650

seq1  AGACACTGAAGAACTGCTCATCCAATCACTCATTGGAATGGTTAATGGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACTGAAGAACTGCTCATCCAATCACTCATTGGAATGGTTAATGGTA  700

seq1  CATACTTTTGACATGGCCTTTATTGAAGGGAGTTATGACATATACAATGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACTTTTGACATGGCCTTTATTGAAGGGAGTTATGACATATACAATGC  750

seq1  TGTTTATGCTTTTGCCCACGCACTCCATCAGATAAC-TTTTCAAAAGTTT  799
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TGTTTATGCTTTTGCCCACGCACTCCATCAGATAACTTTTTCAAAAGTTT  800

seq1  GATAATCTGCCCAAGGACAATGGGAAAGAACACAATTATAGCTGCAAAAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATCTGCCCAAGGACAATGGGAAAGAACACAATTATAGCTGCAAAAA  850

seq1  GGTAATGTTTCTGCTGTTAAATCATGTTTAGTGTTATTAATTTTGTAGTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAATGTTTCTGCTGTTAAATCATGTTTAGTGTTATTAATTTTGTAGTT  900

seq1  GTAAGAGACTATAAATGCCCAAACCAAATGTGCTAGAAAATG-TTTTCCA  948
      |||||||||||| ||||||||||||||||||||||||||||| |||||||
seq2  GTAAGAGACTAT-AATGCCCAAACCAAATGTGCTAGAAAATGTTTTTCCA  949

seq1  AGATGCAAAGAA-TTTTTATTGAGCAAGTA-TATTTTT--ATATTAGTAT  994
      |||||||||||| ||||||||||||||||| |||||||   |||||||||
seq2  AGATGCAAAGAATTTTTTATTGAGCAAGTATTATTTTTTATTATTAGTAT  999

seq1  AAGACTCTAATGTTAAGCGAATATACTAT-GAGGCAGAATCTGTCCATGT  1043
      | |||||| ||||||||||| |||||||| ||||||| ||||||||||||
seq2  AGGACTCT-ATGTTAAGCGATTATACTATGGAGGCAGGATCTGTCCATGT  1048

seq1  AGACCT-GTGATTTTGTTATTGATTACTT-GGATATCATTATACATTTTC  1091
      |||||| ||||||||| |||||||||||| ||||||||||||||| ||||
seq2  AGACCTGGTGATTTTGGTATTGATTACTTGGGATATCATTATACAATTTC  1098

seq1  T-GTTCCT-GAAATCATA--CTCACCCCATGCTCAT-GAGTCT-ACTAAA  1135
      | |||||| |||||||||  |||||||||||||||| |||||| ||||||
seq2  TGGTTCCTGGAAATCATAACCTCACCCCATGCTCATGGAGTCTCACTAAA  1148

seq1  TG  1137
      ||
seq2  TG  1150

seq1: chr17_23683237_23684292
seq2: B6Ng01-226N22.g_69_1133 (reverse)

seq1  AAAAAAAT----AAAACGTGTATCTGCTCAGCTATGA-TCCTGGAGTCAT  45
      | ||||||    ||||||||  ||||||||||||||| ||||||||||||
seq2  ATAAAAATACTAAAAACGTGATTCTGCTCAGCTATGATTCCTGGAGTCAT  50

seq1  GGAGGAAACCCACGCTGGGTATCTGACC-TCTGAGCAATTA-CTGGTATC  93
      |  | || |||||||| ||||||||||| |||||||||||| ||||||||
seq2  GACGAAATCCCACGCT-GGTATCTGACCTTCTGAGCAATTACCTGGTATC  99

seq1  CACGGAGCTGGA-TCTCCTCCCATCTCTGGTTCCTAAAAAACCTGGCTCG  142
      ||||||||| || |||||||||||||||||||||||||||||||||||||
seq2  CACGGAGCTAGATTCTCCTCCCATCTCTGGTTCCTAAAAAACCTGGCTCG  149

seq1  TGAG-ATCCAGGAGTCTACGGAGATAGGGTTGCGTCGGACCAGACACTCT  191
      |||| |||||||||||||| ||||||||||||||||||||||||||||||
seq2  TGAGAATCCAGGAGTCTACCGAGATAGGGTTGCGTCGGACCAGACACTCT  199

seq1  GAGCGCTAAAAAACTGGGCTCGTCC-GGGATTTGAACCCGGGACCTCTCG  240
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GAGCGCTAAAAAACTGGGCTCGTCCGGGGATTTGAACCCGGGACCTCTCG  249

seq1  CACCCAAAGCGAGAATCATACCCCTAGACCAACGAGCCACGGTGACAAGC  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCAAAGCGAGAATCATACCCCTAGACCAACGAGCCACGGTGACAAGC  299

seq1  AGCCTCAACGTTGATCTTTAGGTATCTCGAGCTGAATGACATGCTCCCGC  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCAACGTTGATCTTTAGGTATCTCGAGCTGAATGACATGCTCCCGC  349

seq1  TAGAATTCGACTCCACAAGTTTATTTTTCTAAGAGTTCCAGGAAGCGAAA  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATTCGACTCCACAAGTTTATTTTTCTAAGAGTTCCAGGAAGCGAAA  399

seq1  GGAGGAGATCGGGCTCCGTGGAGACTTGCCTGGAGAGAAAGTTCCGAAAC  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAGATCGGGCTCCGTGGAGACTTGCCTGGAGAGAAAGTTCCGAAAC  449

seq1  GCTCAAGACAGGTCAGACGGCCCCCAGCGTACGATATGAATGACCATAGA  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAAGACAGGTCAGACGGCCCCCAGCGTACGATATGAATGACCATAGA  499

seq1  CCATCGTCCTTCGGGAAAGGGAAGCCAGCGAGTTTGTGTGAACAATGCAG  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCGTCCTTCGGGAAAGGGAAGCCAGCGAGTTTGTGTGAACAATGCAG  549

seq1  TTTCATGGTGGACGGCGGCTCAGAAATTTTGTCCCAGGTAGAGCCAAGTC  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATGGTGGACGGCGGCTCAGAAATTTTGTCCCAGGTAGAGCCAAGTC  599

seq1  TAGGACTTCGAGAATGAGAGCTTCCTGACACGCCAGTCCACACAAGCTCA  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGACTTCGAGAATGAGAGCTTCCTGACACGCCAGTCCACACAAGCTCA  649

seq1  GTCGTCCGGGAGAGCCATAGAACCCGCAGATCCTGTACCTTGGCCAAACC  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGTCCGGGAGAGCCATAGAACCCGCAGATCCTGTACCTTGGCCAAACC  699

seq1  CACTCGGGGCCAGACTCTGCCTAGAAGACCCGCGCAGCTCAGAGACCCAG  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCGGGGCCAGACTCTGCCTAGAAGACCCGCGCAGCTCAGAGACCCAG  749

seq1  ACACAGAAACCACAACTCCGGGTTGGTTCTTCCGAAGCCCACAGCTTAGC  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGAAACCACAACTCCGGGTTGGTTCTTCCGAAGCCCACAGCTTAGC  799

seq1  GTTCGGCAAGGGATCCAGTGTCCTGCGGCGGCTTTGAAAACGCATGCTCG  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCGGCAAGGGATCCAGTGTCCTGCGGCGGCTTTGAAAACGCATGCTCG  849

seq1  CCATGATTAGATTCTGGAACCGATCGGGCCCTAAACGGGGGTCTCACTAA  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGATTAGATTCTGGAACCGATCGGGCCCTAAACGGGGGTCTCACTAA  899

seq1  CATCCTCACAGACCACCACCTTGTCCCCAACCTTGTGACTCCTGGGAACG  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTCACAGACCACCACCTTGTCCCCAACCTTGTGACTCCTGGGAACG  949

seq1  GAAGGGGCCACACAAGCCCTGGCTGTGCGATTGATACGAAGCTACAGGAG  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGGCCACACAAGCCCTGGCTGTGCGATTGATACGAAGCTACAGGAG  999

seq1  CAAACCTACCACCATGGCTCTAAGACAAGTCTAATTCGTTCTAGAACCCG  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCTACCACCATGGCTCTAAGACAAGTCTAATTCGTTCTAGAACCCG  1049

seq1  GAAGTGTATAGAATTC  1056
      ||||||||||||||||
seq2  GAAGTGTATAGAATTC  1065