BAC Information

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BAC

Clone NameB6Ng01-227A18
Chromosome17 (Build37)
Map Location 10,108,503 - 10,227,345
singlet/doubletdoublet
Overlap genenone
Upstream genePde10a, 1700010I14Rik, EG667165, EG667170, LOC666143, 4932702K14Rik
Downstream geneQk, LOC675815, Pacrg, Park2, LOC100041113
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-227A18.bB6Ng01-227A18.g
ACCGA040819GA040820
length1,153885
definitionB6Ng01-227A18.b B6Ng01-227A18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,108,503 - 10,109,651)(10,226,465 - 10,227,345)
sequence
gaattccaaggctaaagtgaactatccccgtgttaaccatggatcagcac
atattcctagctccccatccccgtgaacttacaactgcacagtgcactct
aagctcacagcactgactaggttcttgagttctagaaaaccaaattatga
atgacgggcgggctctcatctaagcggcataccacagagtttggaaaatt
gtctcttcagagacaccagagtgaaatctgagcagatccttgctattcac
cagaatcacacataaaaaatctcactgctaataataataataataataat
aataataataataataataatcctgttaacattttagaaaaaaggctaca
gcaggtattggcgacacagtaaggaactagatccataaacaagggatgtt
tcctgaagtaaggaaggttggggtgtcaatgggccttctggcagccacag
cggggaaatggcaggtgccgtggcccaagaaaatgtccttggtgaattac
tcaattttagcgcattctttgaccatggtactatttcccgtctgtttaaa
gatgcttatcccaagaaaaagacttttcctttttagtctaaagggaaaag
taagggaagacatgacagcgtggtgaccacctccaaagatcagcatagca
ttagataggaaggtggcagagtaccctgtgcctctaaagaaatatctaaa
atcaagtgagtggaagcaacgaaggagcaggccaccatgaggagagagaa
gtttcccacagtgagagcctagaagattgagtggctttcgccgttcctga
cactgttttgggatggggcaggaagagggtagatacatgaaggactaatt
ctcaagtgttgaagagtgtaaactttcatttagacacaggtccatccaaa
tgccctttaacttctgggtatctccacctctttgccaacagacatggtat
tttttgactccctactcttgcgactcaaatggaggttatttgggtaaatg
ctgtttcaggatgtcattaatactgtctatcactgagacagaacgttcat
atttttttatgtatgtgtgtaatgttggcttgccatgtatttctgtgtat
gcacaacacactttgggagtctgcagaaaccagaaacagggctattcgat
gtg

gaattccatcaatgatgaacagtgatgtggaaataaatgtaagctgaaca
aaccctctcctcccagacttggttttggtcatggtgtttggtcacagcaa
tagtaaccctccctggaataatggcccttcttctatttgccttagctact
ctaaagctgtccagttgcttctctagctgccacgcttgaagctgccacgc
agctcagcctgctctctcttcagctgtccttgtcacagcttttctgctgt
ctctgccattgctgtcactccgctgtctctgtggcttctttctgcttgtt
ggcagttcagcccacactgatggaagtagacagatcgttcaggagaaggt
ggagctgttgatccaggtggtgtgagtgctttgaactgaattctagtcct
ctgcaggagcagcacagttttaaccatggctccatctccttagcctctaa
cagggatttaacgataccagtgcccgatagagaggtgacagaacattcct
gtaggacttagatggttccagcagaagcagattgggcagtgagtagcatg
gtagcttctgccgctgtcctgctgactgttgaatgtgtttgaaaattccc
acagtggaaggataaattaaaaataagaccacagctcttctgttttgaaa
ggttaaagtggggttttatggaagcttttgttcggtggtgttctgttctc
agccggcagagccagatcacaatgtctcagttctgcttggggacctgggc
tgtgggtgaggggtggggtggggaagtcagcaaggctcctaagcacactg
ctatattttgcttcctttgggagaaagtatttcacagttctgcctctaag
atgttactgagtcttatcacgaaaattccttttat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_10108503_10109651
seq2: B6Ng01-227A18.b_47_1199

seq1  GAATTCCAAGGCTAAAGTGAACTATCCCCGTGTTAACCATGGATCAGCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGGCTAAAGTGAACTATCCCCGTGTTAACCATGGATCAGCAC  50

seq1  ATATTCCTAGCTCCCCATCCCCGTGAACTTACAACTGCACAGTGCACTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCCTAGCTCCCCATCCCCGTGAACTTACAACTGCACAGTGCACTCT  100

seq1  AAGCTCACAGCACTGACTAGGTTCTTGAGTTCTAGAAAACCAAATTATGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCACAGCACTGACTAGGTTCTTGAGTTCTAGAAAACCAAATTATGA  150

seq1  ATGACGGGCGGGCTCTCATCTAAGCGGCATACCACAGAGTTTGGAAAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACGGGCGGGCTCTCATCTAAGCGGCATACCACAGAGTTTGGAAAATT  200

seq1  GTCTCTTCAGAGACACCAGAGTGAAATCTGAGCAGATCCTTGCTATTCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTTCAGAGACACCAGAGTGAAATCTGAGCAGATCCTTGCTATTCAC  250

seq1  CAGAATCACACATAAAAAATCTCACTGCTAATAATAATAATAATAATAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATCACACATAAAAAATCTCACTGCTAATAATAATAATAATAATAAT  300

seq1  AATAATAATAATAATAATAATCCTGTTAACATTTTAGAAAAAAGGCTACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATAATAATAATAATAATCCTGTTAACATTTTAGAAAAAAGGCTACA  350

seq1  GCAGGTATTGGCGACACAGTAAGGAACTAGATCCATAAACAAGGGATGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTATTGGCGACACAGTAAGGAACTAGATCCATAAACAAGGGATGTT  400

seq1  TCCTGAAGTAAGGAAGGTTGGGGTGTCAATGGGCCTTCTGGCAGCCACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAAGTAAGGAAGGTTGGGGTGTCAATGGGCCTTCTGGCAGCCACAG  450

seq1  CGGGGAAATGGCAGGTGCCGTGGCCCAAGAAAATGTCCTTGGTGAATTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGGAAATGGCAGGTGCCGTGGCCCAAGAAAATGTCCTTGGTGAATTAC  500

seq1  TCAATTTTAGCGCATTCTTTGACCATGGTACTATTTCCCGTCTGTTTAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTTTAGCGCATTCTTTGACCATGGTACTATTTCCCGTCTGTTTAAA  550

seq1  GATGCTTATCCCAAGAAAAAGACTTTTCCTTTTTAGTCTAAAGGGAAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTTATCCCAAGAAAAAGACTTTTCCTTTTTAGTCTAAAGGGAAAAG  600

seq1  TAAGGGAAGACATGACAGCGTGGTGACCACCTCCAAAGATCAGCATAGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGGAAGACATGACAGCGTGGTGACCACCTCCAAAGATCAGCATAGCA  650

seq1  TTAGATAGGAAGGTGGCAGAGTACCCTGTGCCTCTAAAGAAATATCTAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATAGGAAGGTGGCAGAGTACCCTGTGCCTCTAAAGAAATATCTAAA  700

seq1  ATCAAGTGAGTGGAAGCAACGAAGGAGCAGGCCACCATGAGGAGAGAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGTGAGTGGAAGCAACGAAGGAGCAGGCCACCATGAGGAGAGAGAA  750

seq1  GTTTCCCACAGTGAGAGCCTAGAAGATTGAGTGGCTTTCGCCGTTCCTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCCACAGTGAGAGCCTAGAAGATTGAGTGGCTTTCGCCGTTCCTGA  800

seq1  CACTGTTTTGGGATGGGGCAGGAAGAGGGTAGATACATGAAGGACTAATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTTTTGGGATGGGGCAGGAAGAGGGTAGATACATGAAGGACTAATT  850

seq1  CTCAAGTGTTGAAGAGTGTAAACTTTCATTTAGACACAGGTCCATCCAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGTGTTGAAGAGTGTAAACTTTCATTTAGACACAGGTCCATCCAAA  900

seq1  TGCCCTTTAACTTCTGGGTATCTCCACCTCTTTGCCAACAGACATGGTA-  949
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TGCCCTTTAACTTCTGGGTATCTCCACCTCTTTGCCAACAGACATGGTAT  950

seq1  TTTTTGACTCCCTACTCTTGCGACTCAAATGGAGGTTATTT-GGTAAATG  998
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TTTTTGACTCCCTACTCTTGCGACTCAAATGGAGGTTATTTGGGTAAATG  1000

seq1  CTGTTTCAGGATGTCATTAATACTGTCTTATCACTGAGACAG-ACGTTCA  1047
      ||||||||||||||||||||||||||| |||||||||||||| |||||||
seq2  CTGTTTCAGGATGTCATTAATACTGTC-TATCACTGAGACAGAACGTTCA  1049

seq1  TTATTTTTTTATGTTATGTGTGTTAATGTTTGCTTG-CATGTATTTCTGT  1096
       |||||||||||| |||||||| ||||||| ||||| |||||||||||||
seq2  -TATTTTTTTATG-TATGTGTG-TAATGTTGGCTTGCCATGTATTTCTGT  1096

seq1  GTATTGCAC-ACACACTT--GGAGTCTGCAGAAACCAG-AACA-GGCTAT  1141
      ||| ||||| ||||||||  |||||||||||||||||| |||| ||||||
seq2  GTA-TGCACAACACACTTTGGGAGTCTGCAGAAACCAGAAACAGGGCTAT  1145

seq1  CAGATGTG  1149
        ||||||
seq2  TCGATGTG  1153


seq1: chr17_10226465_10227345
seq2: B6Ng01-227A18.g_69_953 (reverse)

seq1  ATAAAAGGAATGTTCGTGATAAGACTCAGTAACATCTTAGAGGCAGAACT  50
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAGGAATTTTCGTGATAAGACTCAGTAACATCTTAGAGGCAGAACT  50

seq1  CTGGAATGCCTTC-CCCAAAGGAAGCAAAA-ATAGCAGTGTGCTCAGGAG  98
       || ||| | ||| |||||||||||||||| ||||||||||||| |||||
seq2  GTGAAATACTTTCTCCCAAAGGAAGCAAAATATAGCAGTGTGCTTAGGAG  100

seq1  CC-TGCTGACTTCCCCA-CCCACCCCTCACCCACAGCCCAGGTCCCCAAG  146
      || |||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CCTTGCTGACTTCCCCACCCCACCCCTCACCCACAGCCCAGGTCCCCAAG  150

seq1  CAGAACTGAGACATTGTGATCTGGCTCTGCCGGCTGAGAACAGAACACCA  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACTGAGACATTGTGATCTGGCTCTGCCGGCTGAGAACAGAACACCA  200

seq1  CCGAACAAAAGCTTCCATAAAACCCCACTTTAACCTTTCAAAACAGAAGA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAACAAAAGCTTCCATAAAACCCCACTTTAACCTTTCAAAACAGAAGA  250

seq1  GCTGTGGTCTTATTTTTAATTTATCCTTCCACTGTGGGAATTTTCAAACA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGGTCTTATTTTTAATTTATCCTTCCACTGTGGGAATTTTCAAACA  300

seq1  CATTCAACAGTCAGCAGGACAGCGGCAGAAGCTACCATGCTACTCACTGC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCAACAGTCAGCAGGACAGCGGCAGAAGCTACCATGCTACTCACTGC  350

seq1  CCAATCTGCTTCTGCTGGAACCATCTAAGTCCTACAGGAATGTTCTGTCA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATCTGCTTCTGCTGGAACCATCTAAGTCCTACAGGAATGTTCTGTCA  400

seq1  CCTCTCTATCGGGCACTGGTATCGTTAAATCCCTGTTAGAGGCTAAGGAG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCTATCGGGCACTGGTATCGTTAAATCCCTGTTAGAGGCTAAGGAG  450

seq1  ATGGAGCCATGGTTAAAACTGTGCTGCTCCTGCAGAGGACTAGAATTCAG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGCCATGGTTAAAACTGTGCTGCTCCTGCAGAGGACTAGAATTCAG  500

seq1  TTCAAAGCACTCACACCACCTGGATCAACAGCTCCACCTTCTCCTGAACG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAGCACTCACACCACCTGGATCAACAGCTCCACCTTCTCCTGAACG  550

seq1  ATCTGTCTACTTCCATCAGTGTGGGCTGAACTGCCAACAAGCAGAAAGAA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTCTACTTCCATCAGTGTGGGCTGAACTGCCAACAAGCAGAAAGAA  600

seq1  GCCACAGAGACAGCGGAGTGACAGCAATGGCAGAGACAGCAGAAAAGCTG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACAGAGACAGCGGAGTGACAGCAATGGCAGAGACAGCAGAAAAGCTG  650

seq1  TGACAAGGACAGCTGAAGAGAGAGCAGGCTGAGCTGCGTGGCAGCTTCAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAGGACAGCTGAAGAGAGAGCAGGCTGAGCTGCGTGGCAGCTTCAA  700

seq1  GCGTGGCAGCTAGAGAAGCAACTGGACAGCTTTAGAGTAGCTAAGGCAAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGGCAGCTAGAGAAGCAACTGGACAGCTTTAGAGTAGCTAAGGCAAA  750

seq1  TAGAAGAAGGGCCATTATTCCAGGGAGGGTTACTATTGCTGTGACCAAAC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGAAGGGCCATTATTCCAGGGAGGGTTACTATTGCTGTGACCAAAC  800

seq1  ACCATGACCAAAACCAAGTCTGGGAGGAGAGGGTTTGTTCAGCTTACATT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGACCAAAACCAAGTCTGGGAGGAGAGGGTTTGTTCAGCTTACATT  850

seq1  TATTTCCACATCACTGTTCATCATTGATGGAATTC  881
      |||||||||||||||||||||||||||||||||||
seq2  TATTTCCACATCACTGTTCATCATTGATGGAATTC  885


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