BAC Information

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BAC

Clone NameB6Ng01-228H23
Chromosome17 (Build37)
Map Location 65,666,830 - 65,667,888
singlet/doubletsinglet
Overlap geneE130009J12Rik
Upstream genePja2, LOC100043582, Man2a1, 4930583I09Rik, LOC100043871
Downstream geneLOC668655, LOC674701, Vapa, Txndc2, Rab31, Ppp4r1, Ralbp1, LOC100043873, LOC100043592, Twsg1, Ankrd12, 5430411C19Rik, Ndufv2, ORF19, Ddx11, LOC100043599, LOC100043875
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-228H23.bB6Ng01-228H23.g
ACCGA041895GA041896
length1,1901,088
definitionB6Ng01-228H23.b B6Ng01-228H23.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccaaatagactggaccagaaaagaaattcctcccaacacataata
atcagaacaacaaatgcactaaataaagatagaatactaaaagcagtaag
ggaaaaaggtcaagtaacatataaaggcaagcctatcagaattacaccag
atttttcaccagagactatgaaagccagaagagcctggacagatgttata
cagactcaaagagaaaacaaattccagcccaggctactatacccagccaa
actctcaattaccatagatggagaaaccaaagtattccacaacaaaaaca
aattcatgcattatctttccacaaatccagcccttcaaaggataataaca
gaaaaaaaccaatacaaggacgggaaccacgccctagaaaaagcaagaat
gtaatccctcaaaaaacctaaaagaagacagccacaaaaacagaatgcca
actttgacaacaaaaataacaggaagcaacaattacttttccttaatatc
tcttaatatcaatggactcaactccccaataaaaagacatagactaacaa
actggctacccaaacaagacccaacattttgctgcttacaggaaactcat
ctcagagaaaaagatagacactacctcagaatgaaaggctggaaaacaat
tttccaagcaaatggtctgaagaaacaagctggagtagccattctgatat
ctaataaaaattgacttccaacccaaagtcatcaaaaagacaaggagggg
cacttcatactcatcaaagttaaaatcctccaagagaaactatcaattct
gaatatctatgttccaaataaaaggtcagccacattcattaaagaaactt
tagtaaatctcaaagcacacattgcacctcacacaataatagtgggagac
ttcaacataccactttcaccaatggacagatcatggaaacagaaactaag
cagggaaacagtgaaaataacagaagttatgaaaaaatgggatctgacag
atatctacaggaacatttatcctaaaacaaaggatatacctttctctcag
cacctcatggtacttctccaaattggacacattattgggtcacaaacaag
ccatcaacagatacaagtatggaattgttcatgcaatctatcagaatcac
catgactaggcctgaatctccagtaaccgaatgtaaacca
gaattcttggtagcttgagctgataggctaggatttgtagttgtattaga
aactttgtactccattgttctttgagttcagtgtgtgaaaaagtttctaa
tataactaagtgcaactgtgtgcatcaggcttttcaaaggtctctctgcc
tctgcactagaacaagaaaaagttaaagtgcatgagccaagccagcatct
tgtgagggaaaatagaaattgtagctattgaaaagaaaaggagcctttgt
cacagtctactcatggatgagcactgctaacaccttttagacaaatccct
caaaggtatgtatttaagtgtgtgtttcctgaatccacgagaatgtggca
atcaggctatttcccccctcaggtttagctgaggctctaaagaatgtgca
ataccaccttgtagtgtaccagggttcccacatgctaacacatgctactc
atttctccgttcaagacatctcccagcccaactgaagaggcggattagtt
accaggaatcagcaagaatgcaggaaggggtgttgtacatgaaagtcctc
tgaatgcttttgagagcccaagggagagacttccttggaggtgagcgttg
cagtatggcctgcctgccctctcagagcagagcccgtctcatatctagcc
aaagaggatgaggatctgtgaaactttttctgcgctgtgatgtcagaatg
agcagtgtgtcatctgaaattgcacttacaagagaagtgccacaccgaaa
gaatgcatggatgcttcttgtggaaaaaggtagggactcaaggggtgagg
gacattcacacgcgtacaccccaaattatgtgtgagctttgttcttggag
ttcagctgctaagattcactactctcttattatttgaacacacacacaga
ctctcttctctctcctctctcatatgcgcaacacacaactcacacacact
taatatatatttttttcctataattgctatatcttttgcctcttcccatc
tttgggaaaagccaattacttattctctgacatctggaggcttatccatc
accttaaatcccatgcccagtgagtcatacttattttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_65666830_65667888
seq2: B6Ng01-228H23.g_69_1155 (reverse)

seq1  AAAATAAGTATGACTCACTGGGCAT-GGATT--AAGTGAT-GAT-AGCCT  45
      ||||||||||||||||||||||||| |||||  | ||||| ||| |||||
seq2  AAAATAAGTATGACTCACTGGGCATGGGATTTAAGGTGATGGATAAGCCT  50

seq1  -CAGATGTC--AGAAT-AGT-ATTTGCTTT---CCAAGATGGG-AGA-GC  85
       ||||||||  ||||| ||| ||| |||||   | |||||||| ||| ||
seq2  CCAGATGTCAGAGAATAAGTAATTGGCTTTTCCCAAAGATGGGAAGAGGC  100

seq1  AAAAG--ATAGCAA-TATAAG-AAAAAATATATA-TAAGTGTGTGTGAG-  129
      |||||  ||||||| |||| | |||||||||||| |||||||||||||| 
seq2  AAAAGATATAGCAATTATAGGAAAAAAATATATATTAAGTGTGTGTGAGT  150

seq1  TGTGTG-TGCGCATATGAGAGA-GAGAGAG-AGAGAGTCTGTGTGTGTGT  176
      |||||| ||||||||||||||| ||||||| |||||||||||||||||||
seq2  TGTGTGTTGCGCATATGAGAGAGGAGAGAGAAGAGAGTCTGTGTGTGTGT  200

seq1  TCAAATAATAAGAGAGTAGTGAATCTTAGCAGCTGAACTCCAAGA--CAA  224
      |||||||||||||||||||||||||||||||||||||||||||||   ||
seq2  TCAAATAATAAGAGAGTAGTGAATCTTAGCAGCTGAACTCCAAGAACAAA  250

seq1  GCTCACACATTATTTGGGGTGTACGCGTGTGAATGTCCCTCACCCCTTGA  274
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GCTCACACATAATTTGGGGTGTACGCGTGTGAATGTCCCTCACCCCTTGA  300

seq1  GTCCCTACC-TTTTCCACAAGAAGCATCCATGCATTCTTTCGGTGTGGCA  323
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTACCTTTTTCCACAAGAAGCATCCATGCATTCTTTCGGTGTGGCA  350

seq1  CTTCTCTTGTAAGTGCAATTTCAGATGACACACTGCTCATTCTGACATCA  373
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTTGTAAGTGCAATTTCAGATGACACACTGCTCATTCTGACATCA  400

seq1  CAGCGCAG-AAAAGTTTCACAGATCCTCATCCTCTTTGGCTAGATATGAG  422
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CAGCGCAGAAAAAGTTTCACAGATCCTCATCCTCTTTGGCTAGATATGAG  450

seq1  ACGGGCTCTGCTCTGAGAGGGCAGGCAGGCCATACTGCAACGCTCACCTC  472
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGGCTCTGCTCTGAGAGGGCAGGCAGGCCATACTGCAACGCTCACCTC  500

seq1  CAAGGAAGTCTCTCCCTTGGGCTCTCAAAAGCATTCAGAGGACTTTCATG  522
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAAGTCTCTCCCTTGGGCTCTCAAAAGCATTCAGAGGACTTTCATG  550

seq1  TACAACACCCCTTCCTGCATTCTTGCTGATTCCTGGTAACTAATCCGCCT  572
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAACACCCCTTCCTGCATTCTTGCTGATTCCTGGTAACTAATCCGCCT  600

seq1  CTTCAGTTGGGCTGGGAGATGTCTTGAACGGAGAAATGAGTAGCATGTGT  622
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGTTGGGCTGGGAGATGTCTTGAACGGAGAAATGAGTAGCATGTGT  650

seq1  TAGCATGTGGGAACCCTGGTACACTACAAGGTGGTATTGCACATTCTTTA  672
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATGTGGGAACCCTGGTACACTACAAGGTGGTATTGCACATTCTTTA  700

seq1  GAGCCTCAGCTAAACCTGAGGGGGGAAATAGCCTGATTGCCACATTCTCG  722
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTCAGCTAAACCTGAGGGGGGAAATAGCCTGATTGCCACATTCTCG  750

seq1  TGGATTCAGGAAACACACACTTAAATACATACCTTTGAGGGATTTGTCTA  772
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTCAGGAAACACACACTTAAATACATACCTTTGAGGGATTTGTCTA  800

seq1  AAAGGTGTTAGCAGTGCTCATCCATGAGTAGACTGTGACAAAGGCTCCTT  822
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTGTTAGCAGTGCTCATCCATGAGTAGACTGTGACAAAGGCTCCTT  850

seq1  TTCTTTTCAATAGCTACAATTTCTATTTTCCCTCACAAGATGCTGGCTTG  872
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTCAATAGCTACAATTTCTATTTTCCCTCACAAGATGCTGGCTTG  900

seq1  GCTCATGCACTTTAACTTTTTCTTGTTCTAGTGCAGAGGCAGAGAGACCT  922
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATGCACTTTAACTTTTTCTTGTTCTAGTGCAGAGGCAGAGAGACCT  950

seq1  TTGAAAAGCCTGATGCACACAGTTGCACTTAGTTATATTAGAAACTTTTT  972
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAAGCCTGATGCACACAGTTGCACTTAGTTATATTAGAAACTTTTT  1000

seq1  CACACACTGAACTCAAAGAACAATGGAGTACAAAGTTTCTAATACAACTA  1022
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACTGAACTCAAAGAACAATGGAGTACAAAGTTTCTAATACAACTA  1050

seq1  CAAATCCTAGCCTATCAGCTCAAGCTACCAAGAATTC  1059
      |||||||||||||||||||||||||||||||||||||
seq2  CAAATCCTAGCCTATCAGCTCAAGCTACCAAGAATTC  1087