BAC Information

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BAC

Clone NameB6Ng01-228K07
Chromosome17 (Build37)
Map Location 50,997,280 - 51,172,915
singlet/doubletdoublet
Overlap geneTbc1d5
Upstream geneKif6, EG668470, Rftn1, EG668475, EG628747, LOC100043818, Dazl, Plcl2, EG654432
Downstream geneLOC100043451, LOC100043452, Satb1, EG628919
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-228K07.bB6Ng01-228K07.g
ACCGA042006GA042007
length1,050736
definitionB6Ng01-228K07.b B6Ng01-228K07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,997,280 - 50,998,331)(51,172,183 - 51,172,915)
sequence
gaattcctgtcctctgcaagggtggtgcctactcattatccatcaaacta
acaaaatgagatgctacagtgtggagataaagtgttctgataataaatat
taacatgaaggttaatgactgtcgagagatgtacttagaatcaaagcaac
acagttctcttaagaatgtgcaatgtagaaaaaaacaatcatagtttaga
cgttttagagaaaataggagcaatgagttaatgaacaaagaacctgaagg
ctttctcataatttattgtacttcagtgacaagaacaccttttactcatc
attggagctcaagatctagtaattccaaatctgcatgcatctaaaggaag
cctaaaagtttttggtgcacaccaaggtttgacacaaaaaaataagccct
attcagggatctgacttctcccccagggaggcggcgattgaacactggta
cttgtggcgtttagatgatacatgttgtccatggtctctggcattagaat
gcttggccctcagttggctctgttcgggagacctgtgatgaggccttccc
ggaggattatgtcactggggcaaggtttgagaacttagagaatggcacca
tttcaagttcactcatgctctctgctttgttctcgtgaactctgctgctt
ctgctgtaggcctgcctgccgccacacttccttgctgtgacagtgatgga
cttttacctctctggaaccataagcccaaaatacagtcttccttctattt
gctttgcttatggtgttgtatcacagcgatagagaagtaatccatacagc
agtgtttgcatcagacaagagctctactgctgagtgacacagccagacca
ggacatttcttcccccttcagaatttccttgcttaatctttaatccaaaa
gatatatggacacataaagaaaacgtagaagaaccaaatgagtagattaa
acaaaaatcacattttttgatatttcattcacaagcactgtatttacaaa
atttctgcctgtcttatccatccccttcaaattcatgatctttcataaat


gaattctcatcagtgaataaagaaatagtatttgcttgataaaatgttga
aaggagttaccatatgcaaattgtatgtttgctagtgttatttaaaatga
gagggtaaattactaaaactttttaagttactagtggtgccacttactcc
aaaacaatggatgaatttcacatccatatggacatcttgataggtcttgg
cacaactgattgtatgttcctaaaaacaaaccttcttcctcccatcacat
ctccagacttgactaagagaagaattttgctattcttctcttgttataga
ttgctttattttttatatttatatggggtgattattatttcttaacctca
gtattattttcagtttaatatgattggataaatggttagggctatttttt
tcttctgaagttttgtttgttctttctacatactaaattgtgtgttatat
ttgatttatgcaaaccagatagaattgacttaatgcccgaaaagtggtat
ctatataaaattcaagcagtaacaattgaaatatttttatttagctgtct
ctaataaaatatttggtgagtatatgaaactgaggggtagggtggagatg
ttttttgctttgtacctacagcaattagaagagtacttttcaaagtctaa
gaaggtggaacttagattgtcttttgtttgtttgtctttttgtttgtttg
ttttttccctggtaaatggaaaatttaattaaacat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_50997280_50998331
seq2: B6Ng01-228K07.b_49_1098

seq1  GAATTCCTGTCCTCTGCAAGGGTGGTGCCTACTCATTATCCATCAAACTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGTCCTCTGCAAGGGTGGTGCCTACTCATTATCCATCAAACTA  50

seq1  ACAAAATGAGATGCTACAGTGTGGAGATAAAGTGTTCTGATAATAAATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAATGAGATGCTACAGTGTGGAGATAAAGTGTTCTGATAATAAATAT  100

seq1  TAACATGAAGGTTAATGACTGTCGAGAGATGTACTTAGAATCAAAGCAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATGAAGGTTAATGACTGTCGAGAGATGTACTTAGAATCAAAGCAAC  150

seq1  ACAGTTCTCTTAAGAATGTGCAATGTAGAAAAAAACAATCATAGTTTAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTCTCTTAAGAATGTGCAATGTAGAAAAAAACAATCATAGTTTAGA  200

seq1  CGTTTTAGAGAAAATAGGAGCAATGAGTTAATGAACAAAGAACCTGAAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTTAGAGAAAATAGGAGCAATGAGTTAATGAACAAAGAACCTGAAGG  250

seq1  CTTTCTCATAATTTATTGTACTTCAGTGACAAGAACACCTTTTACTCATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCATAATTTATTGTACTTCAGTGACAAGAACACCTTTTACTCATC  300

seq1  ATTGGAGCTCAAGATCTAGTAATTCCAAATCTGCATGCATCTAAAGGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGAGCTCAAGATCTAGTAATTCCAAATCTGCATGCATCTAAAGGAAG  350

seq1  CCTAAAAGTTTTTGGTGCACACCAAGGTTTGACACAAAAAAATAAGCCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAAAGTTTTTGGTGCACACCAAGGTTTGACACAAAAAAATAAGCCCT  400

seq1  ATTCAGGGATCTGACTTCTCCCCCAGGGAGGCGGCGATTGAACACTGGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGGGATCTGACTTCTCCCCCAGGGAGGCGGCGATTGAACACTGGTA  450

seq1  CTTGTGGCGTTTAGATGATACATGTTGTCCATGGTCTCTGGCATTAGAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGGCGTTTAGATGATACATGTTGTCCATGGTCTCTGGCATTAGAAT  500

seq1  GCTTGGCCCTCAGTTGGCTCTGTTCGGGAGACCTGTGATGAGGCCTTCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGCCCTCAGTTGGCTCTGTTCGGGAGACCTGTGATGAGGCCTTCCC  550

seq1  GGAGGATTATGTCACTGGGGCAAGGTTTGAGAACTTAGAGAATGGCACCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGATTATGTCACTGGGGCAAGGTTTGAGAACTTAGAGAATGGCACCA  600

seq1  TTTCAAGTTCACTCATGCTCTCTGCTTTGTTCTCGTGAACTCTGCTGCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAGTTCACTCATGCTCTCTGCTTTGTTCTCGTGAACTCTGCTGCTT  650

seq1  CTGCTGTAGGCCTGCCTGCCGCCACACTTCCTTGCTGTGACAGTGATGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGTAGGCCTGCCTGCCGCCACACTTCCTTGCTGTGACAGTGATGGA  700

seq1  CTTTTACCTCTCTGGAACCATAAGCCCAAAATACAGTCTTCCTTCTA-TT  749
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CTTTTACCTCTCTGGAACCATAAGCCCAAAATACAGTCTTCCTTCTATTT  750

seq1  GCTTTGCTTATGGTGTTGTATCACAGCGATAGAGAAGTAATCCATACAGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGCTTATGGTGTTGTATCACAGCGATAGAGAAGTAATCCATACAGC  800

seq1  AGTGTTTGCATCAGACAAGAGCTCTACTGCTGAGTGACACAGCCAGACCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTTGCATCAGACAAGAGCTCTACTGCTGAGTGACACAGCCAGACCA  850

seq1  GGACATTTCTTCCCCCTTCAGAATTTCCTTGCTTAATCTTTAATCCAAAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATTTCTTCCCCCTTCAGAATTTCCTTGCTTAATCTTTAATCCAAAA  900

seq1  GATATATGGACACATAAAGAAAACGTAGAAGAACCAAATGAGTAGATTAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATATGGACACATAAAGAAAACGTAGAAGAACCAAATGAGTAGATTAA  950

seq1  ACAAAAATCACATTTTTTGATAATTTCATTCACAAGCACTGTATTTACAA  999
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ACAAAAATCACATTTTTTGAT-ATTTCATTCACAAGCACTGTATTTACAA  999

seq1  AATTTCTGCCTGTCTTATTCCATCCCCTTCAAATTCATGATCTTTTCATA  1049
      ||||||||||||||||| |||||||||||||||||||||||| |||||||
seq2  AATTTCTGCCTGTCTTA-TCCATCCCCTTCAAATTCATGATC-TTTCATA  1047

seq1  AAT  1052
      |||
seq2  AAT  1050


seq1: chr17_51172183_51172915
seq2: B6Ng01-228K07.g_66_801 (reverse)

seq1  ATGTTT-ATTAAA-TTTCCAGTTACCAGGGGAAAAACAAACAAAC-AAAA  47
      |||||| |||||| |||||| ||||||||| |||||||||||||| ||||
seq2  ATGTTTAATTAAATTTTCCATTTACCAGGGAAAAAACAAACAAACAAAAA  50

seq1  GACAAACAAACAAAAGACAATCTAAGTTCCACCTTCTTAGACTTTGAAAA  97
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAACAAACAAAAGACAATCTAAGTTCCACCTTCTTAGACTTTGAAAA  100

seq1  GTACTCTTCTAATTGCTGTAGGTACAAAGCAAAATACATCTCCACCCTAC  147
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GTACTCTTCTAATTGCTGTAGGTACAAAGCAAAAAACATCTCCACCCTAC  150

seq1  CCCTCAGTTTCATATACTCACCAAATATTTTATTAGAGACAGCTAAATAA  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCAGTTTCATATACTCACCAAATATTTTATTAGAGACAGCTAAATAA  200

seq1  AAATATTTCAATTGTTACTGCTTGAATTTTATATAGATACCACTTTTCGG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTTCAATTGTTACTGCTTGAATTTTATATAGATACCACTTTTCGG  250

seq1  GCATTAAGTCAATTCTATCTGGTTTGCATAAATCAAATATAACACACAAT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTAAGTCAATTCTATCTGGTTTGCATAAATCAAATATAACACACAAT  300

seq1  TTAGTATGTAGAAAGAACAAACAAAACTTCAGAAGAAAAAAATAGCCCTA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTATGTAGAAAGAACAAACAAAACTTCAGAAGAAAAAAATAGCCCTA  350

seq1  ACCATTTATCCAATCATATTAAACTGAAAATAATACTGAGGTTAAGAAAT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTTATCCAATCATATTAAACTGAAAATAATACTGAGGTTAAGAAAT  400

seq1  AATAATCACCCCATATAAATATAAAAAATAAAGCAATCTATAACAAGAGA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATCACCCCATATAAATATAAAAAATAAAGCAATCTATAACAAGAGA  450

seq1  AGAATAGCAAAATTCTTCTCTTAGTCAAGTCTGGAGATGTGATGGGAGGA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAGCAAAATTCTTCTCTTAGTCAAGTCTGGAGATGTGATGGGAGGA  500

seq1  AGAAGGTTTGTTTTTAGGAACATACAATCAGTTGTGCCAAGACCTATCAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGTTTGTTTTTAGGAACATACAATCAGTTGTGCCAAGACCTATCAA  550

seq1  GATGTCCATATGGATGTGAAATTCATCCATTGTTTTGGAGTAAGTGGCAC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTCCATATGGATGTGAAATTCATCCATTGTTTTGGAGTAAGTGGCAC  600

seq1  CACTAGTAACTTAAAAAGTTTTAGTAATTTACCCTCTCATTTTAAATAAC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAGTAACTTAAAAAGTTTTAGTAATTTACCCTCTCATTTTAAATAAC  650

seq1  ACTAGCAAACATACAATTTGCATATGGTAACTCCTTTCAACATTTTATCA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGCAAACATACAATTTGCATATGGTAACTCCTTTCAACATTTTATCA  700

seq1  AGCAAATACTATTTCTTTATTCACTGATGAGAATTC  733
      ||||||||||||||||||||||||||||||||||||
seq2  AGCAAATACTATTTCTTTATTCACTGATGAGAATTC  736


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