BAC Information

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BAC

Clone NameB6Ng01-229L22
Chromosome17 (Build37)
Map Location 35,267,083 - 35,423,416
singlet/doubletdoublet
Overlap geneApom, LOC100043621, Bat3, Bat2, Aif1, EG667612, Lst1, Ltb, Tnf, Lta, Nfkbil1, Atp6v1g2, Bat1a, H2-D1
Upstream geneH2-DMa, H2-DMb2, H2-DMb1, Psmb9, Tap1, Psmb8, Tap2, H2-Ob, H2-Ab1, H2-Aa, H2-Eb1, H2-Eb2, H2-Ea, Btnl2, LOC100038862, LOC667442, BC051142, EG632126, Btnl5, LOC624681, Btnl7, Notch4, Gpsm3, Pbx2, Ager, Rnf5, Agpat1, Egfl8, Ppt2, Prrt1, Fkbpl, Crebl1, Tnxb, EG632302, C4b, Stk19-ps1, Skiv2l-ps1, LOC100043024, Cyp21a2-ps, Cyp21a1, C4a, Stk19, Dom3z, Skiv2l, Rdbp, Cfb, C2, Zbtb12, Ehmt2, Slc44a4, Neu1, 1110038B12Rik, LOC667548, Hspa1b, Hspa1a, Hspa1l, Lsm2, Vars, D17H6S56E-3, Ng23, Msh5, Clic1, Ddah2, AU023871, G6b, Ly6g6c, Ly6g6d, Ly6g6e, Bat5, Ly6g5c, Ly6g5b, Csnk2b, Bat4, D17H6S53E
Downstream geneH2-Q1, EG667636, LOC100043066, H2-Q2, EG625285, LOC436493, H2-Q8, EG667662, H2-Q6, H2-Q7, EG667669, H2-Q10, Pou5f1, Tcf19, Cchcr1, Psors1c2, Cdsn, LOC674169, 2300002M23Rik, LOC672682, Dpcr1, EG433102, Vars2, Gtf2h4, Ddr1, LOC100043663, Ier3, Flot1, Tubb5, Mdc1, Nrm, 2310014H01Rik, Dhx16, 2310061I04Rik, 2610110G12Rik, Mrps18b, LOC100043673, Ppp1r10, LOC100043674, LOC667766, Abcf1, Prr3, Gna-rs1, H2-T24, H2-T23, H2-T22, EG547347, LOC667782, H2-Bl, EG667792, C920025E04Rik, H2-T10, LOC630294, LOC672718, ENSMUSG00000073403, LOC675325, LOC626268, EG667977, LOC625785, H2-T3, LOC100043127, EG667827, LOC435525, LOC677333, LOC100043134, LOC625881, Rpp21, Trim39, H2-M10.2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-229L22.bB6Ng01-229L22.g
ACCGA042792GA042793
length1,057919
definitionB6Ng01-229L22.b B6Ng01-229L22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,267,083 - 35,268,132)(35,422,497 - 35,423,416)
sequence
gaattcctccacacacttctctggagggtgtggtgaccgatctggaagga
cggggaaaattcaggccagtcagtgttcctgcttctcagccctggcttcc
cagctccctaaaggcctgctgaagtgcccacctgttctgaaagaatgtta
aagggccccaactagggagcctttttggccccagctaggtgggcttttta
gccccaactaggggggctctttagccttccagtttccctcggacatttgc
tgccttgtatccccactcactgtagaggagaaagcgctggtagccctggc
ccgtctctttcagcatgattcctcctgggcacgagctggagaacaggtct
gttttcatgtctgggcgccctgttgggatcaggagagaaaaggaggacag
atgcagactcactgaaccaggcctactagtgaggaccatgatcccagctg
cccaggaaactgagacaggagggtttcacattcaaggcctatccatgttc
aacaccctgtgctacagggtgagctcaacaaccatcagggcaacttagtg
aaaccgcctcaaactagaaagggtctagggctacggcccagtgatagcat
gcctgcctcctaagaatgcaggaggtcctaggtccaagcctcaatcccga
ggggaaacggctaagggagacgagacaaggggagggctggtgggaaccaa
ccttcagttctgagttccatgtttcctttcccttcagtcaatcggtatgt
ccacttccggggcacacagaccccacttttcctgcagaggtggcagtgtt
aagataggaagatggagtgtcattcccaccacacagttaacattccttta
ttccaccgttctcttccccacaccctagctctttgggttttgagccacta
agagatagtgaggccccattctgtctccagaaagtgacttgtaatgctgt
gaattgagtgggcagaaagtggggagccttgatgctgggtgtggtgactg
ttcacagtggggcaggagaccacacccagttggtggtctcttgcctctct
tgctcga
gaattctttgcacattacagctgtaccacacgattctgcaggacaagcag
tggtggaaaagacctaatcataccttaaggaacacactaaaaaacaaaaa
gaaagaataaagaccccagggttgaatagatcattctctgagcattaaca
agaaaggaacaacagcagctgagagacactgcatcaaggaaaacgctgtg
gaattaaatcaacagatatactataagggtgtgttaacataagaatggaa
gccagagaacatatggtgttggggatgctggtttgtttatatttccacag
gacacgaaaggtgtggatagtaacaaaactaataaaactcagagttgagc
aggggaggtcttccgaaaacttggccactggcccagaaagagcacagaag
agcctgaccagccactgccttccactgccagccagaaaagcctggacaag
aaatgttcagttcctaaccactgacaggcctatgtcacagaagagtttat
tattgtacgtagaaaacctaagtgttagtaatatgtaaaatcccaaatag
atattgggtttggcagatgcagttatatgtgtgctgaagagatgtagttt
gggtgcctccaagttctccatagataataagaccgccaaggaatggaaag
accctgcctattttaaggtaaggtgaaggggagaggtcttgtggtcattt
gctctatgacctgaggcaaagtcagcagggggtctaggtctacatcactg
agaggtgaaagggctgggccctctatagccttgccctggagcctcttgat
tccaaattacagtgacatagctcagccttgccaagggaggaagggaggag
ttgaaactttctttcaatagcagtggactttgacagacctcttaatttct
cccctccgccccacccctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_35267083_35268132
seq2: B6Ng01-229L22.b_48_1104

seq1  GAATTCCTCCACACACTTCTCTGGAGGGTGTGGTGACCGATCTGGAAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCCACACACTTCTCTGGAGGGTGTGGTGACCGATCTGGAAGGA  50

seq1  CGGGGAAAATTCAGGCCAGTCAGTGTTCCTGCTTCTCAGCCCTGGCTTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGGAAAATTCAGGCCAGTCAGTGTTCCTGCTTCTCAGCCCTGGCTTCC  100

seq1  CAGCTCCCTAAAGGCCTGCTGAAGTGCCCACCTGTTCTGAAAGAATGTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCCCTAAAGGCCTGCTGAAGTGCCCACCTGTTCTGAAAGAATGTTA  150

seq1  AAGGGCCCCAACTAGGGAGCCTTTTTGGCCCCAGCTAGGTGGGCTTTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGCCCCAACTAGGGAGCCTTTTTGGCCCCAGCTAGGTGGGCTTTTTA  200

seq1  GCCCCAACTAGGGGGGCTCTTTAGCCTTCCAGTTTCCCTCGGACATTTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCAACTAGGGGGGCTCTTTAGCCTTCCAGTTTCCCTCGGACATTTGC  250

seq1  TGCCTTGTATCCCCACTCACTGTAGAGGAGAAAGCGCTGGTAGCCCTGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTGTATCCCCACTCACTGTAGAGGAGAAAGCGCTGGTAGCCCTGGC  300

seq1  CCGTCTCTTTCAGCATGATTCCTCCTGGGCACGAGCTGGAGAACAGGTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTCTCTTTCAGCATGATTCCTCCTGGGCACGAGCTGGAGAACAGGTCT  350

seq1  GTTTTCATGTCTGGGCGCCCTGTTGGGATCAGGAGAGAAAAGGAGGACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCATGTCTGGGCGCCCTGTTGGGATCAGGAGAGAAAAGGAGGACAG  400

seq1  ATGCAGACTCACTGAACCAGGCCTACTAGTGAGGACCATGATCCCAGCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGACTCACTGAACCAGGCCTACTAGTGAGGACCATGATCCCAGCTG  450

seq1  CCCAGGAAACTGAGACAGGAGGGTTTCACATTCAAGGCCTATCCATGTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGAAACTGAGACAGGAGGGTTTCACATTCAAGGCCTATCCATGTTC  500

seq1  AACACCCTGTGCTACAGGGTGAGCTCAACAACCATCAGGGCAACTTAGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACCCTGTGCTACAGGGTGAGCTCAACAACCATCAGGGCAACTTAGTG  550

seq1  AAACCGCCTCAAACTAGAAAGGGTCTAGGGCTACGGCCCAGTGATAGCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCGCCTCAAACTAGAAAGGGTCTAGGGCTACGGCCCAGTGATAGCAT  600

seq1  GCCTGCCTCCTAAGAATGCAGGAGGTCCTAGGTCCAAGCCTCAATCCCGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCCTCCTAAGAATGCAGGAGGTCCTAGGTCCAAGCCTCAATCCCGA  650

seq1  GGGGAAACGGCTAAGGGAGACGAGACAAGGGGAGGGCTGGTGGGAACCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAAACGGCTAAGGGAGACGAGACAAGGGGAGGGCTGGTGGGAACCAA  700

seq1  CCTTCAGTTCTGAGTTCCATGTTTCCTTTCCCTTCAGTCAATCGGTATGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCAGTTCTGAGTTCCATGTTTCCTTTCCCTTCAGTCAATCGGTATGT  750

seq1  CCACTTCCGGGGCACACAGACCCCACTTTTCCTGCAGAGGTGGCAGTGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTCCGGGGCACACAGACCCCACTTTTCCTGCAGAGGTGGCAGTGTT  800

seq1  AAGATAGGAAGATGGAGTGTCATTCCCACCACACAG-TAACA-TCCTTTA  848
      |||||||||||||||||||||||||||||||||||| ||||| |||||||
seq2  AAGATAGGAAGATGGAGTGTCATTCCCACCACACAGTTAACATTCCTTTA  850

seq1  TTCCACCGTTCTCTTCCCCACACCCTAGCTCTTTGGGTTTTGAGCCACTA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACCGTTCTCTTCCCCACACCCTAGCTCTTTGGGTTTTGAGCCACTA  900

seq1  AGAGATAGTGAGGCCCCATTCTGTCTCCAGAAAGTGACTTGTAATGCTGT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATAGTGAGGCCCCATTCTGTCTCCAGAAAGTGACTTGTAATGCTGT  950

seq1  GGAATTGAGTGGGCAGAAAGT-GGGAGCC-TGATGCTGGGTGTGGTGACT  996
       |||||||||||||||||||| ||||||| ||||||||||||||||||||
seq2  -GAATTGAGTGGGCAGAAAGTGGGGAGCCTTGATGCTGGGTGTGGTGACT  999

seq1  GTTCACAGTTGGGGCA-GAGAACACACCCAG-TGGT-GTCTC-TGCCTC-  1041
      |||||||| ||||||| |||| ||||||||| |||| ||||| |||||| 
seq2  GTTCACAG-TGGGGCAGGAGACCACACCCAGTTGGTGGTCTCTTGCCTCT  1048

seq1  CTTGCTCGA  1050
      |||||||||
seq2  CTTGCTCGA  1057

seq1: chr17_35422497_35423416
seq2: B6Ng01-229L22.g_70_988 (reverse)

seq1  AAGGGGTGGGGAGGAGAGAGAGAGATTAAGAGTTCTGTCAAAGTCCAACT  50
      ||||||||||| |||| | |||| |||||||| ||||||||||||| |||
seq2  AAGGGGTGGGGCGGAG-GGGAGAAATTAAGAGGTCTGTCAAAGTCC-ACT  48

seq1  GCTTATGAAAG-AAGTCTCTAGCTCCTCCCCTCCTCCCTTGGC-AGGCTG  98
      |||  |||||| |||| || | |||||||| |||||||||||| ||||||
seq2  GCTATTGAAAGAAAGTTTC-AACTCCTCCCTTCCTCCCTTGGCAAGGCTG  97

seq1  AGCTATGTCACTGTAATTTGGGAATCAAGGAGGCTCCAAGGCAAGGCTAT  148
      ||||||||||||||||||| |||||||| ||||||||| |||||||||||
seq2  AGCTATGTCACTGTAATTT-GGAATCAA-GAGGCTCCAGGGCAAGGCTAT  145

seq1  AGA-GGCCCAGCCCTTTCACCTCTCAGTGATGTAGACCTAGACCCCCTGC  197
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGCCCAGCCCTTTCACCTCTCAGTGATGTAGACCTAGACCCCCTGC  195

seq1  TGACTTTGCCTCAGGTCATAGAGC-AATGACCACAAGACCTCTCCCCTTC  246
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TGACTTTGCCTCAGGTCATAGAGCAAATGACCACAAGACCTCTCCCCTTC  245

seq1  ACCTTACCTTAAAATAGGCAGGGTCTTTCCATTCCTTGGCGGTCTTATTA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTACCTTAAAATAGGCAGGGTCTTTCCATTCCTTGGCGGTCTTATTA  295

seq1  TCTATGGAGAACTTGGAGGCACCCAAACTACATCTCTTCAGCACACATAT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGGAGAACTTGGAGGCACCCAAACTACATCTCTTCAGCACACATAT  345

seq1  AACTGCATCTGCCAAACCCAATATCTATTTGGGATTTTACATATTACTAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCATCTGCCAAACCCAATATCTATTTGGGATTTTACATATTACTAA  395

seq1  CACTTAGGTTTTCTACGTACAATAATAAACTCTTCTGTGACATAGGCCTG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTAGGTTTTCTACGTACAATAATAAACTCTTCTGTGACATAGGCCTG  445

seq1  TCAGTGGTTAGGAACTGAACATTTCTTGTCCAGGCTTTTCTGGCTGGCAG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGGTTAGGAACTGAACATTTCTTGTCCAGGCTTTTCTGGCTGGCAG  495

seq1  TGGAAGGCAGTGGCTGGTCAGGCTCTTCTGTGCTCTTTCTGGGCCAGTGG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGGCAGTGGCTGGTCAGGCTCTTCTGTGCTCTTTCTGGGCCAGTGG  545

seq1  CCAAGTTTTCGGAAGACCTCCCCTGCTCAACTCTGAGTTTTATTAGTTTT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTTTTCGGAAGACCTCCCCTGCTCAACTCTGAGTTTTATTAGTTTT  595

seq1  GTTACTATCCACACCTTTCGTGTCCTGTGGAAATATAAACAAACCAGCAT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACTATCCACACCTTTCGTGTCCTGTGGAAATATAAACAAACCAGCAT  645

seq1  CCCCAACACCATATGTTCTCTGGCTTCCATTCTTATGTTAACACACCCTT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAACACCATATGTTCTCTGGCTTCCATTCTTATGTTAACACACCCTT  695

seq1  ATAGTATATCTGTTGATTTAATTCCACAGCGTTTTCCTTGATGCAGTGTC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTATATCTGTTGATTTAATTCCACAGCGTTTTCCTTGATGCAGTGTC  745

seq1  TCTCAGCTGCTGTTGTTCCTTTCTTGTTAATGCTCAGAGAATGATCTATT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGCTGCTGTTGTTCCTTTCTTGTTAATGCTCAGAGAATGATCTATT  795

seq1  CAACCCTGGGGTCTTTATTCTTTCTTTTTGTTTTTTAGTGTGTTCCTTAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCCTGGGGTCTTTATTCTTTCTTTTTGTTTTTTAGTGTGTTCCTTAA  845

seq1  GGTATGATTAGGTCTTTTCCACCACTGCTTGTCCTGCAGAATCGTGTGGT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATGATTAGGTCTTTTCCACCACTGCTTGTCCTGCAGAATCGTGTGGT  895

seq1  ACAGCTGTAATGTGCAAAGAATTC  920
      ||||||||||||||||||||||||
seq2  ACAGCTGTAATGTGCAAAGAATTC  919