BAC Information

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BAC

Clone NameB6Ng01-229N20
Chromosome17 (Build37)
Map Location 50,828,453 - 50,829,610
singlet/doubletsinglet
Overlap genenone
Upstream geneKif6, EG668470, Rftn1, EG668475, EG628747, LOC100043818, Dazl, Plcl2
Downstream geneEG654432, Tbc1d5, LOC100043451, LOC100043452
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-229N20.bB6Ng01-229N20.g
ACCGA042881GA042882
length1,170967
definitionB6Ng01-229N20.b B6Ng01-229N20.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcccacctaggtctccattttcctgggtcctcaatgaagatttgcc
tattgcctgttgttcctgcgctgtcctggattacacagacccatatagac
agacagacagacagacagacacacacacacacactcgtggcaaacccatg
gggatttgtacctaaggtaactcacatgctgctccctgcgaacagatgca
gatgatgaagggcaatcaacctgcacactaccctgactgtccccacaact
cctgaagccccaaaacaaggatcgtgattttgtttaccagcgggatacag
ttcgttacagagtgagccagagagacctttacaaaagaattgtttccaga
agcctgtaaatcatagccttactctatccatcttgacaaatgtcttctct
ttccatttggatgatgaagagcgcacctgattcaggctctgctgacaggc
actgtcctcagtgacaggtggcatattccttagggcaggaactagagaag
cagtggacacccactgctgtgggaaccctcctgacactgtgcctgcactt
ctccactacttgttaaagcatattgctttaaggagaccaaaagaagcttg
gctaggtagcaccaacatgttggatgttgagacttcaggcacccacagct
tccacatccggaacaaacatgtcagtgtgaatgatggcaactcccccagt
tttctgttgttttgagacagagtctcacagtgtaacacgtctcggtctct
gaagtgctgggatcacaggtccacgctcagtttcgactcctttagttcta
agatccctgattttaggcctgtatgagcctcaacaagttacatgtcttac
aatttacagtcacttgacttgcatattgtatgataaccaccatttattac
agacacagccatattttcacttcactgtattttaagtcaccttagagatc
atttctagagttttaaacgtcaaattgagtgctattttgctaagtttagg
accactaacaaatgttctccattactttgtgcatctaataattctgtggc
tattttccattcattttcctcccttattccaggagtttcatctctaagaa
gctcagcttactgaagtagtggtttaatctattatcatgcagagagtttt
tccaatgtagactcaacctg

gaattcagtttgcaaatattttattgaaaaaatttgcatccacgttcaaa
agacacattggtctgtactttttttgttgagcctttgattttggtatagg
gtaataagagtttcataaaagaaattagaatctgtttcctccttttgcag
attagcttggggagtgttgttagatcttcactgtaggacgagtgggttct
gcactgaatccatctagctctggactgatattacttgggagattttaaat
tatgatttctatcttattgtttattcagggtctatttaaatcatttatta
catcttgatttaactttggtaagttgtatatatctagaagttaatctgtt
tcttttagagttttccaacttggtggactataaatgttaaaagtatgctt
ttatgattgtcttgagtttcatcagtgtcttttaatatatttttatctct
ggttttattaatttggtccatttttctctttcttttggttagtttggcca
aaggtttatcagtcttcttaatattttcaaaggactgattcattggttca
ctgatttttttaaatgctgttttctttgtctctgttttatgaatgtcagc
tctgattttgcctatctcttctcacccactctttggttcctgtcttgcta
gggccttcagatgcacctttgagttgtaatttgagagctctatttttgat
gtaagaacctagtgctgtagacttccctcttaggcctgcctctattgtgg
ccattgattttggtatattgtgttttcatttttcatgcacactctaggat
tttaaagtccctatccttgattccttcatccaatttccagtttattagtg
tcttatttagtttttatgaatttgtgtactttgtttctctctgtggttga
tatccatcctttattaacgtagtgcttctcgagaggatgtgaaatgtaat
ttcaattgtcctgcatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_50828453_50829610
seq2: B6Ng01-229N20.b_48_1217 (reverse)

seq1  CAGGTGTGAGTCT-CATTGG-AAAACTCT-TCCATTGATAATAGAT--AA  45
      ||||| ||||||| |||||| |||||||| | || |||||||||||  ||
seq2  CAGGT-TGAGTCTACATTGGAAAAACTCTCTGCA-TGATAATAGATTAAA  48

seq1  ACACTAC-TCAGT-AGCTGAGGCTCTTAGAGATG-AACT-CTGGA--TAG  89
       |||||| ||||| |||||||  ||||||||||| |||| |||||   ||
seq2  CCACTACTTCAGTAAGCTGAGCTTCTTAGAGATGAAACTCCTGGAATAAG  98

seq1  GGAGAAAAATGAATGGAAAATAG-CACAGAATAATTAGATGCACAAAGTA  138
      |||| |||||||||||||||||| |||||||| |||||||||||||||||
seq2  GGAGGAAAATGAATGGAAAATAGCCACAGAATTATTAGATGCACAAAGTA  148

seq1  ATGGAGAACA-TTGTTAGTGGTCCTTAAACTTAGC-AAATAGCACTCAAT  186
      |||||||||| ||||||||||||| |||||||||| ||||||||||||||
seq2  ATGGAGAACATTTGTTAGTGGTCC-TAAACTTAGCAAAATAGCACTCAAT  197

seq1  TTGACGTTTAAAACTCTAGAAATGATCTCTAAAGGTGACTTAAAATACAG  236
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TTGACGTTTAAAACTCTAGAAATGATCTCT-AAGGTGACTTAAAATACAG  246

seq1  TGAAGTGAAAATATGGCTGTGTCTGTAAT-AATGGTGGTTATCATACAAT  285
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TGAAGTGAAAATATGGCTGTGTCTGTAATAAATGGTGGTTATCATACAAT  296

seq1  ATGCAAGTCAAGTGACTGT-AATTGTAAGACATGTAACTTGTTGAGGCTC  334
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  ATGCAAGTCAAGTGACTGTAAATTGTAAGACATGTAACTTGTTGAGGCTC  346

seq1  ATACAGGCCTAAAATCAGGGATCTTAGAACTAAAGGAGTCGAAACTGAGC  384
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGGCCTAAAATCAGGGATCTTAGAACTAAAGGAGTCGAAACTGAGC  396

seq1  GTGGACCTGTGATCCCAGCACTTCAGAGACCGAGACGTGTTACACTGTGA  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGACCTGTGATCCCAGCACTTCAGAGACCGAGACGTGTTACACTGTGA  446

seq1  GACTCTGTCTCAAAACAACAGAAAACTGGGGGAGTTGCCATCATTCACAC  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTGTCTCAAAACAACAGAAAACTGGGGGAGTTGCCATCATTCACAC  496

seq1  TGACATGTTTGTTCCGGATGTGGAAGCTGTGGGTGCCTGAAGTCTCAACA  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATGTTTGTTCCGGATGTGGAAGCTGTGGGTGCCTGAAGTCTCAACA  546

seq1  TCCAACATGTTGGTGCTACCTAGCCAAGCTTCTTTTGGTCTCCTTAAAGC  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAACATGTTGGTGCTACCTAGCCAAGCTTCTTTTGGTCTCCTTAAAGC  596

seq1  AATATGCTTTAACAAGTAGTGGAGAAGTGCAGGCACAGTGTCAGGAGGGT  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGCTTTAACAAGTAGTGGAGAAGTGCAGGCACAGTGTCAGGAGGGT  646

seq1  TCCCACAGCAGTGGGTGTCCACTGCTTCTCTAGTTCCTGCCCTAAGGAAT  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACAGCAGTGGGTGTCCACTGCTTCTCTAGTTCCTGCCCTAAGGAAT  696

seq1  ATGCCACCTGTCACTGAGGACAGTGCCTGTCAGCAGAGCCTGAATCAGGT  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCACCTGTCACTGAGGACAGTGCCTGTCAGCAGAGCCTGAATCAGGT  746

seq1  GCGCTCTTCATCATCCAAATGGAAAGAGAAGACATTTGTCAAGATGGATA  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCTCTTCATCATCCAAATGGAAAGAGAAGACATTTGTCAAGATGGATA  796

seq1  GAGTAAGGCTATGATTTACAGGCTTCTGGAAACAATTCTTTTGTAAAGGT  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAAGGCTATGATTTACAGGCTTCTGGAAACAATTCTTTTGTAAAGGT  846

seq1  CTCTCTGGCTCACTCTGTAACGAACTGTATCCCGCTGGTAAACAAAATCA  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTGGCTCACTCTGTAACGAACTGTATCCCGCTGGTAAACAAAATCA  896

seq1  CGATCCTTGTTTTGGGGCTTCAGGAGTTGTGGGGACAGTCAGGGTAGTGT  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATCCTTGTTTTGGGGCTTCAGGAGTTGTGGGGACAGTCAGGGTAGTGT  946

seq1  GCAGGTTGATTGCCCTTCATCATCTGCATCTGTTCGCAGGGAGCAGCATG  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTTGATTGCCCTTCATCATCTGCATCTGTTCGCAGGGAGCAGCATG  996

seq1  TGAGTTACCTTAGGTACAAATCCCCATGGGTTTGCCACGAGTGTGTGTGT  1034
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTACCTTAGGTACAAATCCCCATGGGTTTGCCACGAGTGTGTGTGT  1046

seq1  GTGTGTCTGTCTGTCTGTCTGTCTGTCTATATGGGTCTGTGTAATCCAGG  1084
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTCTGTCTGTCTGTCTGTCTGTCTATATGGGTCTGTGTAATCCAGG  1096

seq1  ACAGCGCAGGAACAACAGGCAATAGGCAAATCTTCATTGAGGACCCAGGA  1134
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCGCAGGAACAACAGGCAATAGGCAAATCTTCATTGAGGACCCAGGA  1146

seq1  AAATGGAGACCTAGGTGGGAATTC  1158
      ||||||||||||||||||||||||
seq2  AAATGGAGACCTAGGTGGGAATTC  1170


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