BAC Information

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BAC

Clone NameB6Ng01-230G21
Chromosome17 (Build37)
Map Location 51,539,615 - 51,674,136
singlet/doubletdoublet
Overlap geneLOC100043451, LOC100043452
Upstream genePlcl2, EG654432, Tbc1d5
Downstream geneSatb1, EG628919, LOC672987, EG328839
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-230G21.bB6Ng01-230G21.g
ACCGA043296GA043297
length1,1171,029
definitionB6Ng01-230G21.b B6Ng01-230G21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,539,615 - 51,540,744)(51,673,121 - 51,674,136)
sequence
gaattcatcacaccagacttaatatatacctgtcagttcactttggccca
gcaacgttattagattataatgtattaatgtaacaaactattatgcatta
gttacttaaaaagtgagttttgctctgtcatctttgcaatcatacatttc
agaatagaaggtacaaaattagtgagatttaattatggccccatccacag
tgttatcaacagaaagggcctcctctggagttgtacagcctgctccacct
cagggatgcacatataatggttctggttttctgttgtgtctttatatacc
tggatatatacctggacttgttttacagagtctaggattgtggttgaaac
ataattctttcactttctcagatgctattcattctgctttatcgggtaac
tttaaaggcaatatttaaatgtagcaaacatattttcatgtcttagtgtg
tgtgtgtgtgttatacaattctgtatgtgtttctgcacgtgcaggtgtct
gggggtggggacaggcatcttgaggttgatttcaggatccttcctcaata
ttctccatgataatttgtgtagatagatttttctctcttgagcacattaa
tttgcctctacctgctggccagaaaacccagggtacttctgtctctgcct
tgcctgaagttctggcttttgatatgagtgctatgactctgagcacagtt
ccctcagcttctatgggcaaacaccttacttatctgagccatgccccagc
cccttgtgttattaaacgtcacacacctgagctgttctggtatctttgac
tcctgtgccttgcagctggtttgcccagctctaatttccaccacagggaa
agtatggcttgtgttcctgtcctccactatcttgtttgtgacaactagtg
ttcctttctttggtttgtgacaaaatttgttaggtcaaagaaccttttta
aaaacagtgtaatgatgaccttgcccagctacagcaaacctggctatcag
tgttccactcgacagtggatctcaatattcagagaaaaagtgctacttca
ggaaaaaaaatataaagctgagctctagctctagctgtgctgaactggag
aggagcacagtttgcag

gaattctgagaggaaaaaaaatgcaggaggtgggggggaacgaaggaaga
aagaaaagagacagagagaagggggtggtgtaaacaacaacaaagcacac
gtaagtgcctcttaaatgtgaaagatttctgtttaattttgcgtaagtgt
tccgtgctatcagttgctgcttgaattaaatgaaaagcaatttcggtggt
aaactgagcccttaaatgtaagaaataatttccttctcttccccccttct
cagctccaatcctaaattacagcagcctgggcgcggaggtggagcgggtg
tcggtttccaccgagccacctcctcagcagccctggcgagcacccttaat
aatagctcaagggcagagtgcagaggagtccaggaccgcccgggagcctg
ctcctccattcttaaaatccagccggaaggagcatcgacgctgtaccaac
cttctatttaaaagagtgaattggagcttacactatttctttgttggcgt
tttttttttttcaactttaaaaaaaatgctttaaaataaattcctttggc
agtctattctttcttttgctgcttttcttttctaccaaagagaggaagaa
gagaaaggaaagggaaaaaaaatcctagcaacttacgttacacatggaaa
ataagaaagacccctgactaagttaagtttatcaatgatcctcaaatctc
catctacacagtagtgtcagcaacggcctataaccagatgagtttgaaaa
aaacaatatttttaagacaaaaaggattaggctgtcttgtaattccagtt
gtttcctgtcaggctaaatggaggtaaccatgaggagtgaaatttaatat
aaagataatatatataatgcatatatacttgtattagaaaacagttatca
atcacaaagtcaggagctactgcttattataaagtcagtattctatggaa
ttgttggggggagaaaggtgcccatcaacagaacattcttctgcaaatcg
cctttgctgttggtgtgtgtgatgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_51539615_51540744
seq2: B6Ng01-230G21.b_44_1160

seq1  GAATTCATCACACCAGACTTAATATATACCTGTCAGTTCACTTTGGCCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCACACCAGACTTAATATATACCTGTCAGTTCACTTTGGCCCA  50

seq1  GCAACGTTATTAGATTATAATGTATTAATGTAACAAACTATTATGCATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACGTTATTAGATTATAATGTATTAATGTAACAAACTATTATGCATTA  100

seq1  GTTACTTAAAAAGTGAGTTTTGCTCTGTCATCTTTGCAATCATACATTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACTTAAAAAGTGAGTTTTGCTCTGTCATCTTTGCAATCATACATTTC  150

seq1  AGAATAGAAGGTACAAAATTAGTGAGATTTAATTATGGCCCCATCCACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAGAAGGTACAAAATTAGTGAGATTTAATTATGGCCCCATCCACAG  200

seq1  TGTTATCAACAGAAAGGGCCTCCTCTGGAGTTGTACAGCCTGCTCCACCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATCAACAGAAAGGGCCTCCTCTGGAGTTGTACAGCCTGCTCCACCT  250

seq1  CAGGGATGCACATATAATGGTTCTGGTTTTCTGTTGTGTCTTTATATACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGATGCACATATAATGGTTCTGGTTTTCTGTTGTGTCTTTATATACC  300

seq1  TGGATATATACCTGGACTTGTTTTACAGAGTCTAGGATTGTGGTTGAAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATATATACCTGGACTTGTTTTACAGAGTCTAGGATTGTGGTTGAAAC  350

seq1  ATAATTCTTTCACTTTCTCAGATGCTATTCATTCTGCTTTATCGGGTAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTCTTTCACTTTCTCAGATGCTATTCATTCTGCTTTATCGGGTAAC  400

seq1  TTTAAAGGCAATATTTAAATGTAGCAAACATATTTTCATGTCTTAGTGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAGGCAATATTTAAATGTAGCAAACATATTTTCATGTCTTAGTGTG  450

seq1  TGTGTGTGTGTTATACAATTCTGTATGTGTTTCTGCACGTGCAGGTGTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTTATACAATTCTGTATGTGTTTCTGCACGTGCAGGTGTCT  500

seq1  GGGGGTGGGGACAGGCATCTTGAGGTTGATTTCAGGATCCTTCCTCAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGTGGGGACAGGCATCTTGAGGTTGATTTCAGGATCCTTCCTCAATA  550

seq1  TTCTCCATGATAATTTGTGTAGATAGATTTTTCTCTCTTGAGCACATTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCATGATAATTTGTGTAGATAGATTTTTCTCTCTTGAGCACATTAA  600

seq1  TTTGCCTCTACCTGCTGGCCAGAAAACCCAGGGTACTTCTGTCTCTGCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCTCTACCTGCTGGCCAGAAAACCCAGGGTACTTCTGTCTCTGCCT  650

seq1  TGCCTGAAGTTCTGGCTTTTGATATGAGTGCTATGACTCTGAGCACAGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGAAGTTCTGGCTTTTGATATGAGTGCTATGACTCTGAGCACAGTT  700

seq1  CCCTCAGCTTCTATGGGCAAACACCTTACTTATCTGAGCCATGCCCCAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCAGCTTCTATGGGCAAACACCTTACTTATCTGAGCCATGCCCCAGC  750

seq1  CCCTTGTGTTATTAAACGTCACACACCTGAGCTGTTCTGGTATCTTTGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGTGTTATTAAACGTCACACACCTGAGCTGTTCTGGTATCTTTGAC  800

seq1  TCCTGTGCCTTGCAGCTGGTTTGCCCAGCTCTAATTTCCACCACAGGG-A  849
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TCCTGTGCCTTGCAGCTGGTTTGCCCAGCTCTAATTTCCACCACAGGGAA  850

seq1  AGTATGGCTTGTGTTCCTGTCCTCCACTATCTTGTTTGTGACAAACTAGT  899
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AGTATGGCTTGTGTTCCTGTCCTCCACTATCTTGTTTGTGAC-AACTAGT  899

seq1  GTTCCTTTCTTTGGTTTGTGACAAAATTTGTTAGGTCAAAGAACCTTTTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTTTCTTTGGTTTGTGACAAAATTTGTTAGGTCAAAGAACCTTTTT  949

seq1  AAAAACAGTGTAATGATGACCCTTGCCCAAGCTACAGCAAACCTGGCTAT  999
      ||||||||||||||||||| |||||||| |||||||||||||||||||||
seq2  AAAAACAGTGTAATGATGA-CCTTGCCC-AGCTACAGCAAACCTGGCTAT  997

seq1  CAGTGTTCCACTCGACAGTGGATCTCAATAATTTCAGGAGAAAAAAAGTT  1049
      ||||||||||||||||||||||||||||||  |||| ||||||||    |
seq2  CAGTGTTCCACTCGACAGTGGATCTCAATA--TTCA-GAGAAAAA---GT  1041

seq1  GCTACTTCAGGAAAAAAAAAAAAAAGCTGAGCTCCTAGCTCCTAGCTGTG  1099
      ||||||||||||||||||| | ||||||||||| |||||| |||||||||
seq2  GCTACTTCAGGAAAAAAAATATAAAGCTGAGCT-CTAGCT-CTAGCTGTG  1089

seq1  CCTGAGACTGGAAGAGGAGCCACAG-TTGCAG  1130
       |||| ||||| ||||||| ||||| ||||||
seq2  -CTGA-ACTGG-AGAGGAG-CACAGTTTGCAG  1117


seq1: chr17_51673121_51674136
seq2: B6Ng01-230G21.g_63_1091 (reverse)

seq1  --ACACA-CACACACAC--ACA-CAAAGGCGATTTGCAG-AGAATG-TCT  42
        ||||| |||||||||  ||| |||||||||||||||| |||||| |||
seq2  ACACACATCACACACACCAACAGCAAAGGCGATTTGCAGAAGAATGTTCT  50

seq1  GTTGATGGGCA-CTTTCT-CCCCCAACAATTCCATAGAATACTGACTTTA  90
      ||||||||||| |||||| |||||||||||||||||||||||||||||||
seq2  GTTGATGGGCACCTTTCTCCCCCCAACAATTCCATAGAATACTGACTTTA  100

seq1  T-ATAAGCAGTAGCTCCTGACTTTGTGATTGATAACTGTTTTCTAATACA  139
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAGCAGTAGCTCCTGACTTTGTGATTGATAACTGTTTTCTAATACA  150

seq1  AGTATATATGCATTATATATATTATCTTTATATTAAATTTCACTCCTCAT  189
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATATATGCATTATATATATTATCTTTATATTAAATTTCACTCCTCAT  200

seq1  GGTTACCTCCA-TTAGCCTGACAGGAAACAACTGGAATTACAAGACAGCC  238
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GGTTACCTCCATTTAGCCTGACAGGAAACAACTGGAATTACAAGACAGCC  250

seq1  TAATCCTTTTTGTCTTAAAAATATTGTTTTTTTCAAACTCATCTGGTTAT  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCTTTTTGTCTTAAAAATATTGTTTTTTTCAAACTCATCTGGTTAT  300

seq1  AGG-CGTTGCTGACACTACTGTGTAGATGGAGATTTGAGGATCATTGATA  337
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCGTTGCTGACACTACTGTGTAGATGGAGATTTGAGGATCATTGATA  350

seq1  AACTTAACTTAGTCAGGGGTCTTTCTTATTTTCCATGTGTAACGTAAGTT  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTAACTTAGTCAGGGGTCTTTCTTATTTTCCATGTGTAACGTAAGTT  400

seq1  GCTAGGATTTTTTTTCCCTTTCCTTTCTCTTCTTCCTCTCTTTGGTAGAA  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGGATTTTTTTTCCCTTTCCTTTCTCTTCTTCCTCTCTTTGGTAGAA  450

seq1  AAGAAAAGCAGCAAAAGAAAGAATAGACTGCCAAAGGAATTTATTTTAAA  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAGCAGCAAAAGAAAGAATAGACTGCCAAAGGAATTTATTTTAAA  500

seq1  GCATTTTTTTTAAAGTTGAAAAAAAAAAAACGCCAACAAAGAAATAGTGT  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTTTTTTAAAGTTGAAAAAAAAAAAACGCCAACAAAGAAATAGTGT  550

seq1  AAGCTCCAATTCACTCTTTTAAATAGAAGGTTGGTACAGCGTCGATGCTC  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCCAATTCACTCTTTTAAATAGAAGGTTGGTACAGCGTCGATGCTC  600

seq1  CTTCCGGCTGGATTTTAAGAATGGAGGAGCAGGCTCCCGGGCGGTCCTGG  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCGGCTGGATTTTAAGAATGGAGGAGCAGGCTCCCGGGCGGTCCTGG  650

seq1  ACTCCTCTGCACTCTGCCCTTGAGCTATTATTAAGGGTGCTCGCCAGGGC  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTCTGCACTCTGCCCTTGAGCTATTATTAAGGGTGCTCGCCAGGGC  700

seq1  TGCTGAGGAGGTGGCTCGGTGGAAACCGACACCCGCTCCACCTCCGCGCC  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGAGGAGGTGGCTCGGTGGAAACCGACACCCGCTCCACCTCCGCGCC  750

seq1  CAGGCTGCTGTAATTTAGGATTGGAGCTGAGAAGGGGGGAAGAGAAGGAA  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTGCTGTAATTTAGGATTGGAGCTGAGAAGGGGGGAAGAGAAGGAA  800

seq1  ATTATTTCTTACATTTAAGGGCTCAGTTTACCACCGAAATTGCTTTTCAT  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTCTTACATTTAAGGGCTCAGTTTACCACCGAAATTGCTTTTCAT  850

seq1  TTAATTCAAGCAGCAACTGATAGCACGGAACACTTACGCAAAATTAAACA  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTCAAGCAGCAACTGATAGCACGGAACACTTACGCAAAATTAAACA  900

seq1  GAAATCTTTCACATTTAAGAGGCACTTACGTGTGCTTTGTTGTTGTTTAC  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCTTTCACATTTAAGAGGCACTTACGTGTGCTTTGTTGTTGTTTAC  950

seq1  ACCACCCCCTTCTCTCTGTCTCTTTTCTTTCTTCCTTCGTTCCCCCCCAC  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCCCCTTCTCTCTGTCTCTTTTCTTTCTTCCTTCGTTCCCCCCCAC  1000

seq1  CTCCTGCATTTTTTTTCCTCTCAGAATTC  1016
      |||||||||||||||||||||||||||||
seq2  CTCCTGCATTTTTTTTCCTCTCAGAATTC  1029


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